GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000838-TA|BGIBMGA000838-PA|IPR001766|Fork head
transcription factor
         (218 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_04_0051 + 12863978-12864476,12864575-12864674,12865567-128656...    30   1.3  
12_02_1105 + 26128108-26129032,26129535-26129663,26129924-26131104     29   2.2  
08_01_0516 - 4499797-4499949,4500040-4500617,4500699-4500756,450...    29   3.9  
11_01_0298 - 2231063-2232015,2232124-2232798,2232918-2232946,223...    28   5.1  
12_01_0151 - 1158834-1159703,1159917-1160092,1160144-1162097,116...    28   6.8  
09_03_0156 - 12844549-12845138,12845237-12845723                       28   6.8  
08_02_0527 + 18212938-18213257,18213352-18213991                       28   6.8  
01_06_1187 + 35232252-35232976,35233078-35233134,35233323-35233692     27   8.9  

>11_04_0051 +
           12863978-12864476,12864575-12864674,12865567-12865657,
           12866114-12866176,12866364-12866549,12866994-12867024,
           12867054-12867502
          Length = 472

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 15/31 (48%), Positives = 18/31 (58%)

Query: 154 PEEKAAEPLHTAKIIGFPKVIVLDEAAIAAA 184
           P  +A    H AKI GF KV   +EAA+ AA
Sbjct: 388 PRNRAKSAHHAAKITGFGKVTPRNEAALQAA 418


>12_02_1105 + 26128108-26129032,26129535-26129663,26129924-26131104
          Length = 744

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 27/104 (25%), Positives = 48/104 (46%), Gaps = 7/104 (6%)

Query: 12  RRRKLSKNIDNDNDCASLAWLLNFRLDEVVNVRVPDDEPVVKEAKVDVESPAVRKPPYTY 71
           R+R +  N  N+ +  S ++LL F  D+ ++  + D E + KE  V +E  ++       
Sbjct: 616 RKRAIFANSINEKESLSYSFLLMF--DQNIHRNMLDREIMDKETMVVLEKLSILAANCLR 673

Query: 72  PELIERALRENGELTVSGIYQWISDRFPFYKANDERWKNSVRHN 115
           P   +R   +     V+   Q I  R P + A+D +  +S  HN
Sbjct: 674 PRGDDRPTMKE----VAECLQMIR-RHPMHAASDHKGDSSAHHN 712


>08_01_0516 -
           4499797-4499949,4500040-4500617,4500699-4500756,
           4500855-4500932,4501032-4501091,4501219-4501332,
           4501436-4501594
          Length = 399

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 11/30 (36%), Positives = 16/30 (53%)

Query: 31  WLLNFRLDEVVNVRVPDDEPVVKEAKVDVE 60
           W+  FR  EV+ V  P  EP+ +    DV+
Sbjct: 236 WIAGFRPSEVIRVLAPQLEPMTERQAADVQ 265


>11_01_0298 -
           2231063-2232015,2232124-2232798,2232918-2232946,
           2233053-2233513,2233593-2233717,2233801-2234098,
           2235004-2236234,2236562-2237233,2237329-2238539
          Length = 1884

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 18/87 (20%), Positives = 38/87 (43%), Gaps = 2/87 (2%)

Query: 85  LTVSGIYQWISDRFPFYKAND-ERWKNSVRHNLSINPHFRKGARAPQGAGHLWSLAANAI 143
           L+ +  +Q + ++F    AN+ E ++ +      ++  +R GA  P G   +   + + +
Sbjct: 728 LSQTNAHQVMDNQFTLCSANNNEAFRQTPLAKTYVDNAYRNGAFGPSGTSSISHQSMSMV 787

Query: 144 DLLPLRNTPMPEEKAAEP-LHTAKIIG 169
            ++P R    P      P L    +IG
Sbjct: 788 TVMPNRTQAQPAHGLIRPDLSCGSVIG 814


>12_01_0151 - 1158834-1159703,1159917-1160092,1160144-1162097,
            1162360-1162620,1162729-1162916,1164127-1164166
          Length = 1162

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 15/53 (28%), Positives = 26/53 (49%)

Query: 127  RAPQGAGHLWSLAANAIDLLPLRNTPMPEEKAAEPLHTAKIIGFPKVIVLDEA 179
            + P+G G L SL    I++LP+  T +   +    L    ++  P + VL E+
Sbjct: 1043 KLPEGLGMLGSLEDLMINILPVLTTLLESMQGLTSLRHINLMSCPMLTVLPES 1095


>09_03_0156 - 12844549-12845138,12845237-12845723
          Length = 358

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 15/31 (48%), Positives = 18/31 (58%)

Query: 154 PEEKAAEPLHTAKIIGFPKVIVLDEAAIAAA 184
           P  +A    H AKI GF KV   +EAA+ AA
Sbjct: 235 PCNRAKSAHHAAKITGFGKVPPRNEAALQAA 265


>08_02_0527 + 18212938-18213257,18213352-18213991
          Length = 319

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 13/42 (30%), Positives = 17/42 (40%)

Query: 95  SDRFPFYKANDERWKNSVRHNLSINPHFRKGARAPQGAGHLW 136
           SD  PF   N ++ K + R    +      GA  P   GH W
Sbjct: 94  SDHQPFRTTNAKKRKTTARWTSQVRVSAAGGAEGPADDGHSW 135


>01_06_1187 + 35232252-35232976,35233078-35233134,35233323-35233692
          Length = 383

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 15/56 (26%), Positives = 21/56 (37%)

Query: 52  VKEAKVDVESPAVRKPPYTYPELIERALRENGELTVSGIYQWISDRFPFYKANDER 107
           + + K  +  P V    Y Y E  +    +N E      + W SD   F    DER
Sbjct: 245 LSDGKYRIIKPPVEIERYNYHEYPDAYGHDNSEAIEEQNFDWDSDNDNFINTTDER 300


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.317    0.134    0.404 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,186,192
Number of Sequences: 37544
Number of extensions: 316594
Number of successful extensions: 654
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 648
Number of HSP's gapped (non-prelim): 8
length of query: 218
length of database: 14,793,348
effective HSP length: 79
effective length of query: 139
effective length of database: 11,827,372
effective search space: 1644004708
effective search space used: 1644004708
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 58 (27.5 bits)