GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000838-TA|BGIBMGA000838-PA|IPR001766|Fork head
transcription factor
         (218 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g14980.1 68416.m01894 PHD finger transcription factor, putati...    29   3.2  
At3g48350.1 68416.m05277 cysteine proteinase, putative similar t...    28   5.7  
At3g06300.1 68416.m00723 oxidoreductase, 2OG-Fe(II) oxygenase fa...    28   5.7  
At5g45560.1 68418.m05595 pleckstrin homology (PH) domain-contain...    27   7.5  
At4g26870.1 68417.m03867 aspartyl-tRNA synthetase, putative / as...    27   7.5  
At2g36720.1 68415.m04505 PHD finger transcription factor, putative     27   7.5  
At1g48620.1 68414.m05439 histone H1/H5 family protein weak simil...    27   7.5  
At5g08480.2 68418.m01002 VQ motif-containing protein contains PF...    27   9.9  
At4g02660.1 68417.m00361 WD-40 repeat family protein / beige-rel...    27   9.9  
At3g45200.1 68416.m04878 hypothetical protein                          27   9.9  
At1g78140.1 68414.m09106 methyltransferase-related similar to Pr...    27   9.9  
At1g03060.1 68414.m00280 WD-40 repeat family protein / beige-rel...    27   9.9  

>At3g14980.1 68416.m01894 PHD finger transcription factor, putative
           contains Pfam profile: PF00628 PHD-finger
          Length = 1189

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 14/32 (43%), Positives = 21/32 (65%), Gaps = 3/32 (9%)

Query: 29  LAWLLNFRL---DEVVNVRVPDDEPVVKEAKV 57
           L+WL+  ++   DEV+ +R PDD+ VVK   V
Sbjct: 622 LSWLIATKVISRDEVIQLRDPDDDTVVKTGLV 653


>At3g48350.1 68416.m05277 cysteine proteinase, putative similar to
           cysteine endopeptidase precursor [Ricinus communis]
           GI:2944446; contains Pfam profile PF00112: Papain family
           cysteine protease
          Length = 364

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 21/103 (20%), Positives = 40/103 (38%), Gaps = 1/103 (0%)

Query: 3   TKTPESEKWRRRKLSKNIDNDNDCASL-AWLLNFRLDEVVNVRVPDDEPVVKEAKVDVES 61
           T+ P S  WR +     + N  DC S  A+     ++ +  +R      + ++  VD ++
Sbjct: 124 TRVPSSVDWREKGAVTEVKNQQDCGSCWAFSTVAAVEGINKIRTNKLVSLSEQELVDCDT 183

Query: 62  PAVRKPPYTYPELIERALRENGELTVSGIYQWISDRFPFYKAN 104
              +       E     ++ NG +     Y + S    F +AN
Sbjct: 184 EENQGCAGGLMEPAFEFIKNNGGIKTEETYPYDSSDVQFCRAN 226


>At3g06300.1 68416.m00723 oxidoreductase, 2OG-Fe(II) oxygenase
           family protein similar to prolyl 4-hydroxylase, alpha
           subunit, from Rattus norvegicus [GI:474940], Mus
           musculus [SP|Q60715], Homo sapiens [GI:18073925];
           contains PF03171 2OG-Fe(II) oxygenase superfamily domain
          Length = 299

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 11/25 (44%), Positives = 19/25 (76%)

Query: 3   TKTPESEKWRRRKLSKNIDNDNDCA 27
           T  P+++++ RR LS+N D+ +DCA
Sbjct: 172 TVFPDAQEFSRRSLSENKDDLSDCA 196


>At5g45560.1 68418.m05595 pleckstrin homology (PH) domain-containing
           protein / lipid-binding START domain-containing protein
           weak similarity to SP|P79245 Steroidogenic acute
           regulatory protein, mitochondrial precursor (StAR) {Ovis
           aries}; contains Pfam profiles PF01852: START domain,
           PF00169: PH domain
          Length = 719

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 15/49 (30%), Positives = 26/49 (53%)

Query: 15  KLSKNIDNDNDCASLAWLLNFRLDEVVNVRVPDDEPVVKEAKVDVESPA 63
           K S +ID  N  +  + L++   D+    ++PD EP  + +K D E+ A
Sbjct: 424 KSSLSIDQTNGASRNSVLMDEDSDDDDEFQIPDSEPEPETSKQDQETDA 472


>At4g26870.1 68417.m03867 aspartyl-tRNA synthetase, putative /
           aspartate--tRNA ligase, putative simialr to
           aspartate-tRNA ligase (EC 6.1.1.12) from Drosophila
           melanogaster GI:4512034, Homo sapiens SP|P14868, Rattus
           norvegicus SP|P15178; contains Pfam profile PF00152 tRNA
           synthetases class II (D, K and N)
          Length = 532

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 10/55 (18%), Positives = 27/55 (49%)

Query: 162 LHTAKIIGFPKVIVLDEAAIAAASIIPDQDLFSGSTMFLNPVSAEQVIRKCGLIT 216
           LH  +++G    ++L E+      ++ +  + +    F+  +S E V+   G+++
Sbjct: 94  LHKNRLVGTKLFVILRESGFTVQCVVEETRVGANMIKFVKQLSRESVVELIGVVS 148


>At2g36720.1 68415.m04505 PHD finger transcription factor, putative
          Length = 1007

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 22/77 (28%), Positives = 33/77 (42%), Gaps = 3/77 (3%)

Query: 135 LWSLAANAIDLLPLRNTPMPEEKAAEPLHTAKIIGFPKVIVLDEAAIAAASIIPDQDLFS 194
           L+S     +  L + +  +P  + AEPL   K  GF K+    E       I      F 
Sbjct: 908 LFSCIEKLLSSLNVESIVVPAAEEAEPLWMNKF-GFRKLA--PEQLSKYIKICYQMVRFK 964

Query: 195 GSTMFLNPVSAEQVIRK 211
           G++M   PV + Q+I K
Sbjct: 965 GASMLQKPVDSHQIIDK 981


>At1g48620.1 68414.m05439 histone H1/H5 family protein weak
           similarity to HMG I/Y like protein [Glycine max]
           GI:15706274, HMG-I/Y protein HMGa [Triticum aestivum]
           GI:20502966; contains Pfam profiles PF00538: linker
           histone H1 and H5 family, PF02178: AT hook motif
          Length = 479

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 14/51 (27%), Positives = 24/51 (47%)

Query: 36  RLDEVVNVRVPDDEPVVKEAKVDVESPAVRKPPYTYPELIERALRENGELT 86
           R D +VN   P  +PV+  +          +PP   P++++     NG+LT
Sbjct: 161 RSDFIVNENQPLPDPVLASSTPQTIKRGRGRPPKAKPDVVQPQPLTNGKLT 211


>At5g08480.2 68418.m01002 VQ motif-containing protein contains
           PF05678: VQ motif
          Length = 173

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 17/71 (23%), Positives = 29/71 (40%), Gaps = 1/71 (1%)

Query: 5   TPESEKWRRRKLSKNIDNDNDCASLAWLLNFRLDEVVNVRVPDDEPVVKEAKVDVESPAV 64
           TP S+      L+  +   +   S   L+    D      + ++E  +KE +  +     
Sbjct: 90  TPSSKSGNTNLLTSPVGTPSSLFSNLSLIEGEPDSCTT-NIEEEEKAIKERRFYLHPSPR 148

Query: 65  RKPPYTYPELI 75
            KP YT PEL+
Sbjct: 149 SKPGYTEPELL 159


>At4g02660.1 68417.m00361 WD-40 repeat family protein /
           beige-related contains Pfam PF00400: WD domain, G-beta
           repeat; similar to BEIGE (GI:3928547) [Rattus
           norvegicus]; lysosomal trafficking regulator - Bos
           taurus, EMBL: AF114785
          Length = 3471

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 16/64 (25%), Positives = 30/64 (46%), Gaps = 5/64 (7%)

Query: 148 LRNTPMPEEKAAEPLHTAKIIGFPK-----VIVLDEAAIAAASIIPDQDLFSGSTMFLNP 202
           L N  + +E    PL    + GFP      ++ + E A+   + +P+Q+L S   +   P
Sbjct: 531 LENYRICQELKTVPLLVLNMGGFPSSLQELILKILEYAVTVVNCVPEQELLSLCFLLQQP 590

Query: 203 VSAE 206
           + +E
Sbjct: 591 IDSE 594


>At3g45200.1 68416.m04878 hypothetical protein
          Length = 300

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 1/40 (2%)

Query: 68  PYTYPELIERALRENGELTVSGIYQWISDRFPFYKANDER 107
           P T+ E+IE   +E GE  V G+Y    ++  F  AN  R
Sbjct: 215 PVTHAEIIELFTKEYGENCVEGVYMQHDNKRSF-NANANR 253


>At1g78140.1 68414.m09106 methyltransferase-related similar to
           Probable delta(24)-sterol C-methyltransferase
           (Swiss-Prot:O14321) [Schizosaccharomyces pombe]; similar
           to C5-O-methyltransferase (GI:5921167) [Streptomyces
           avermitilis]; similar to S-adenosyl-methionine-sterol-C-
           methyltransferase (GI:3560474) [Nicotiana tabacum]
          Length = 355

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 10/23 (43%), Positives = 15/23 (65%)

Query: 193 FSGSTMFLNPVSAEQVIRKCGLI 215
           +SGS +FLN    E + + CGL+
Sbjct: 314 YSGSHIFLNERELEDICKACGLV 336


>At1g03060.1 68414.m00280 WD-40 repeat family protein /
           beige-related similar to BEIGE (GI:3928547) [Rattus
           norvegicus]; Similar to gb|U70015 lysosomal trafficking
           regulator from Mus musculus and contains 2 Pfam PF00400
           WD-40, G-beta repeats. ESTs gb|T43386 and gb|AA395236
           come from this gene
          Length = 3601

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 14/64 (21%), Positives = 31/64 (48%), Gaps = 5/64 (7%)

Query: 148 LRNTPMPEEKAAEPLHTAKIIGFPK-----VIVLDEAAIAAASIIPDQDLFSGSTMFLNP 202
           + N  + +E    PL    + GFP      ++ + E A+   + +P+Q+L S   +   P
Sbjct: 528 VENYRLCQELRTVPLLVLNMAGFPSSLQDIILKILEYAVTVVNCVPEQELLSLCCLLQQP 587

Query: 203 VSAE 206
           ++++
Sbjct: 588 ITSQ 591


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.317    0.134    0.404 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,694,244
Number of Sequences: 28952
Number of extensions: 244564
Number of successful extensions: 630
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 624
Number of HSP's gapped (non-prelim): 13
length of query: 218
length of database: 12,070,560
effective HSP length: 78
effective length of query: 140
effective length of database: 9,812,304
effective search space: 1373722560
effective search space used: 1373722560
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 57 (27.1 bits)