Silkworm BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000836-TA|BGIBMGA000836-PA|undefined
         (386 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCPJ732.01 |vps5||retromer complex subunit Vps5|Schizosaccharom...    28   1.9  
SPBC354.08c |||DUF221 family protein|Schizosaccharomyces pombe|c...    27   5.9  

>SPCPJ732.01 |vps5||retromer complex subunit
           Vps5|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 576

 Score = 28.3 bits (60), Expect = 1.9
 Identities = 13/46 (28%), Positives = 23/46 (50%)

Query: 304 LSSPLGALSPWGSSPDLARRTPLGSPDGDRTPTNEEEVPAVSPASS 349
           L++   A  PW S  +    +P+G+ +    P +E+ V  +  ASS
Sbjct: 115 LNADFSANKPWISEVNSFSPSPIGATENPTIPNSEQTVDTLDAASS 160


>SPBC354.08c |||DUF221 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 865

 Score = 26.6 bits (56), Expect = 5.9
 Identities = 12/43 (27%), Positives = 22/43 (51%)

Query: 25  HAQLNTLTIMIVSNSWKFIAVLQRGVLLYYSNKAAARDSGRWR 67
           +A +N L ++  S  +    + Q+ +L+Y SN +     G WR
Sbjct: 593 YACINPLVLLFASVLFCVNYLTQKYILMYVSNSSTESGGGYWR 635


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.312    0.125    0.361 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,313,955
Number of Sequences: 5004
Number of extensions: 44015
Number of successful extensions: 66
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 64
Number of HSP's gapped (non-prelim): 2
length of query: 386
length of database: 2,362,478
effective HSP length: 74
effective length of query: 312
effective length of database: 1,992,182
effective search space: 621560784
effective search space used: 621560784
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 55 (26.2 bits)