Silkworm BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000836-TA|BGIBMGA000836-PA|undefined
         (386 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_10302| Best HMM Match : VDE (HMM E-Value=4.4)                       35   0.13 
SB_22178| Best HMM Match : Involucrin2 (HMM E-Value=2.6)               30   3.7  

>SB_10302| Best HMM Match : VDE (HMM E-Value=4.4)
          Length = 578

 Score = 34.7 bits (76), Expect = 0.13
 Identities = 22/67 (32%), Positives = 32/67 (47%), Gaps = 7/67 (10%)

Query: 91  FSDGDSHKLAVPPVEDIAAA-RQAWVTALNEHIAYSGHYLWAGASPDTAKEATEELDEET 149
           +SD   H  +V P +      RQ W+ +L+EH AYS HY      P       +E D+  
Sbjct: 106 YSDNTVHIWSVSPNDPAPQVQRQRWLNSLHEHCAYSTHYT---TQPTL---LVDEYDQNF 159

Query: 150 KPLGTMQ 156
            PLG ++
Sbjct: 160 LPLGDIK 166


>SB_22178| Best HMM Match : Involucrin2 (HMM E-Value=2.6)
          Length = 311

 Score = 29.9 bits (64), Expect = 3.7
 Identities = 15/44 (34%), Positives = 21/44 (47%)

Query: 301 TAGLSSPLGALSPWGSSPDLARRTPLGSPDGDRTPTNEEEVPAV 344
           T G  +P G   P+G S   + +TP G P   R P+     PA+
Sbjct: 268 TCGFKAPFGLQVPYGYSVPCSLQTPYGYPVPYRCPSFSPWTPAM 311


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.312    0.125    0.361 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,943,788
Number of Sequences: 59808
Number of extensions: 357195
Number of successful extensions: 664
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 662
Number of HSP's gapped (non-prelim): 2
length of query: 386
length of database: 16,821,457
effective HSP length: 83
effective length of query: 303
effective length of database: 11,857,393
effective search space: 3592790079
effective search space used: 3592790079
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 61 (28.7 bits)