Silkworm BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000836-TA|BGIBMGA000836-PA|undefined
         (386 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g27520.1 68417.m03952 plastocyanin-like domain-containing pro...    33   0.43 
At1g18950.1 68414.m02358 aminoacyl-tRNA synthetase family contai...    32   0.75 
At1g45180.1 68414.m05180 zinc finger (C3HC4-type RING finger) fa...    31   1.3  
At4g02425.1 68417.m00328 expressed protein                             30   2.3  
At1g26150.1 68414.m03192 protein kinase family protein similar t...    30   2.3  

>At4g27520.1 68417.m03952 plastocyanin-like domain-containing
           protein similar to PIR|JC7196 phytocyanin-related
           protein Pn14 {Ipomoea nil}; contains Pfam profile
           PF02298: Plastocyanin-like domain
          Length = 349

 Score = 32.7 bits (71), Expect = 0.43
 Identities = 31/90 (34%), Positives = 38/90 (42%), Gaps = 12/90 (13%)

Query: 304 LSSPLGALSPWGSSPDLARRTPLGS---PDGDRTPTNEEEV-PAVSPASSRGTLVSAGGH 359
           ++ P GA SP  SSP     +P GS   P G  +P +   V PA SP  S      +G  
Sbjct: 153 MTPPGGAHSPKSSSPVSPTTSPPGSTTPPGGAHSPKSSSAVSPATSPPGSMAP--KSGSP 210

Query: 360 VYRNARPYAPCTRRRYVHP------NPPAP 383
           V     P AP      V P      +PPAP
Sbjct: 211 VSPTTSPPAPPKSTSPVSPSSAPMTSPPAP 240



 Score = 29.1 bits (62), Expect = 5.3
 Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 3/59 (5%)

Query: 301 TAGLSSPLGALSPWGSSPDLARRTPLGSPDGDRTPTNEEEV---PAVSPASSRGTLVSA 356
           +A ++SP   ++P  SS       P+ SP G   P +   V   P VSP+ + G   S+
Sbjct: 231 SAPMTSPPAPMAPKSSSTIPPSSAPMTSPPGSMAPKSSSPVSNSPTVSPSLAPGGSTSS 289


>At1g18950.1 68414.m02358 aminoacyl-tRNA synthetase family contains
           aminoacyl-transfer RNA synthetases class-II signature 1,
           PROSITE:PS00179
          Length = 766

 Score = 31.9 bits (69), Expect = 0.75
 Identities = 16/44 (36%), Positives = 21/44 (47%)

Query: 100 AVPPVEDIAAARQAWVTALNEHIAYSGHYLWAGASPDTAKEATE 143
           A+PPV  +A  R  WVT L   I    H++  G  P  A +  E
Sbjct: 185 AIPPVTRMALTRDTWVTVLCRKIRDCWHWVAEGDLPIVALQGRE 228


>At1g45180.1 68414.m05180 zinc finger (C3HC4-type RING finger)
           family protein similar to Pfam domain, PF00097: Zinc
           finger, C3HC4 type (RING finger)
          Length = 645

 Score = 31.1 bits (67), Expect = 1.3
 Identities = 21/56 (37%), Positives = 28/56 (50%), Gaps = 5/56 (8%)

Query: 333 RTPTNEEEVPAVSPASSRGTLVSAGGHVYRNA---RPYAPCTRRRYVHPNPPAPAL 385
           R  +N  E+P   PA     +  A GH+ RNA   R  A  + R  V P+P +PAL
Sbjct: 349 RQRSNTLEIPLFVPAPELRNV--AHGHISRNASGARHVASSSSRTSVQPSPSSPAL 402


>At4g02425.1 68417.m00328 expressed protein 
          Length = 262

 Score = 30.3 bits (65), Expect = 2.3
 Identities = 19/68 (27%), Positives = 30/68 (44%), Gaps = 2/68 (2%)

Query: 307 PLGALSPWGSSPDLARRTPLGSPDGDRTPTNEEEVPAVSPASSRGTLVSAGGHVYRNARP 366
           P+G  S +GS P        G   GD     EE+V  +    +  T+  +G   + +++P
Sbjct: 186 PMGNESGYGSEPGYRGDAEFGY--GDEFDDEEEDVKPLFWGDTDSTMGMSGETKFSDSKP 243

Query: 367 YAPCTRRR 374
              C RRR
Sbjct: 244 QFRCRRRR 251


>At1g26150.1 68414.m03192 protein kinase family protein similar to
           Pto kinase interactor 1 GI:3668069 from [Lycopersicon
           esculentum]
          Length = 760

 Score = 30.3 bits (65), Expect = 2.3
 Identities = 28/90 (31%), Positives = 36/90 (40%), Gaps = 6/90 (6%)

Query: 299 LVTAGLSSPLGALSPWGSS-PDLARRTPLGSPDGDR--TPTNEEEVPAVSPAS--SRGTL 353
           LV    S P    SP  S  P   R  P   P  +R  TP ++ E P+  P     R   
Sbjct: 172 LVPPSHSPPRHLPSPPASEIPPPPRHLP-SPPASERPSTPPSDSEHPSPPPPGHPKRREQ 230

Query: 354 VSAGGHVYRNARPYAPCTRRRYVHPNPPAP 383
               G       P +P   +R VHP+PP+P
Sbjct: 231 PPPPGSKRPTPSPPSPSDSKRPVHPSPPSP 260


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.312    0.125    0.361 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,904,585
Number of Sequences: 28952
Number of extensions: 239584
Number of successful extensions: 457
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 453
Number of HSP's gapped (non-prelim): 6
length of query: 386
length of database: 12,070,560
effective HSP length: 82
effective length of query: 304
effective length of database: 9,696,496
effective search space: 2947734784
effective search space used: 2947734784
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 60 (28.3 bits)