GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000836-TA|BGIBMGA000836-PA|undefined
         (386 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory recept...    23   2.8  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    23   4.9  
AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.        22   6.5  
AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    22   6.5  

>AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory receptor
           candidate 46 protein.
          Length = 1451

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 11/37 (29%), Positives = 21/37 (56%)

Query: 12  LAHSTTAITNTTSHAQLNTLTIMIVSNSWKFIAVLQR 48
           L +  + I + ++ A + T+ I  V N WKFI  +++
Sbjct: 435 LINVPSLIIHVSTSAYVATVWINSVINRWKFIEFIRK 471


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 10/23 (43%), Positives = 12/23 (52%)

Query: 113  AWVTALNEHIAYSGHYLWAGASP 135
            AWVT L +     G+ L A  SP
Sbjct: 1542 AWVTELKQAFKPKGYLLSAAVSP 1564


>AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.
          Length = 556

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 13/48 (27%), Positives = 19/48 (39%)

Query: 327 GSPDGDRTPTNEEEVPAVSPASSRGTLVSAGGHVYRNARPYAPCTRRR 374
           G PD     ++  EV    P     T+ + GG + +N     P   RR
Sbjct: 14  GMPDESINISDVIEVIETDPDFHESTMFNGGGEIPQNIIQQQPQQARR 61


>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 10/32 (31%), Positives = 16/32 (50%)

Query: 333 RTPTNEEEVPAVSPASSRGTLVSAGGHVYRNA 364
           R   + + VP ++PA  RG + +A   V   A
Sbjct: 158 RHHVDHQPVPYLTPADDRGRVAAAAAMVAETA 189


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.312    0.125    0.361 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 65,805
Number of Sequences: 317
Number of extensions: 2432
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1
Number of HSP's gapped (non-prelim): 4
length of query: 386
length of database: 114,650
effective HSP length: 58
effective length of query: 328
effective length of database: 96,264
effective search space: 31574592
effective search space used: 31574592
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 44 (21.8 bits)