Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000836-TA|BGIBMGA000836-PA|undefined
(386 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0115 - 14789499-14790288,14792055-14792441,14792820-14793193 31 1.6
07_03_0463 - 18449908-18450171,18450718-18450810,18451170-184512... 31 2.1
07_01_1144 - 10725663-10726013 31 2.1
07_01_0678 - 5103836-5104613,5104697-5104888,5104994-5105036,510... 31 2.1
07_03_1091 + 23899825-23900649,23900750-23900998,23901104-239011... 30 2.7
06_01_0672 - 4903126-4903219,4903322-4903430,4903620-4905096,490... 30 2.7
06_01_0727 + 5326085-5326217,5326352-5326478,5326820-5327375 30 3.6
12_02_1149 - 26467252-26468319,26468452-26469147,26469263-264694... 29 4.8
03_06_0345 - 33281126-33281783,33281872-33282063,33282175-332822... 29 4.8
03_05_0333 + 23245139-23245224,23245527-23245633,23246372-23247282 29 4.8
04_04_1454 - 33715782-33715797,33715887-33715918,33716582-33716920 29 6.3
>09_04_0115 - 14789499-14790288,14792055-14792441,14792820-14793193
Length = 516
Score = 31.1 bits (67), Expect = 1.6
Identities = 24/86 (27%), Positives = 33/86 (38%), Gaps = 2/86 (2%)
Query: 300 VTAGLSSPLGALSPWGSSPDLARRTPLGSPDGDRTPTNEEEVPAVSPASSRGTLVSAGGH 359
V G ++ +P S A T LG+ PT PA SPA T +A
Sbjct: 25 VPGGSAAAASRAAPPASPTSAAAATTLGASPAAAPPTGPASSPAASPALQ--TSAAAAAS 82
Query: 360 VYRNARPYAPCTRRRYVHPNPPAPAL 385
+ P +P + + PAPAL
Sbjct: 83 LVVVEPPASPTSAAATILGASPAPAL 108
>07_03_0463 -
18449908-18450171,18450718-18450810,18451170-18451254,
18451607-18451705,18452099-18452238,18453036-18453482
Length = 375
Score = 30.7 bits (66), Expect = 2.1
Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Query: 304 LSSPLGALSPWGSSPDLARRTPLGSPDGDRTPTNEEEVPAVSPASSR 350
LS+P LS G+ P L R+P PD PT ++ PA A+ R
Sbjct: 4 LSTPSFDLSA-GAEPTLGPRSPPPPPDAVHPPTPQQAAPASEAAARR 49
>07_01_1144 - 10725663-10726013
Length = 116
Score = 30.7 bits (66), Expect = 2.1
Identities = 15/32 (46%), Positives = 18/32 (56%)
Query: 325 PLGSPDGDRTPTNEEEVPAVSPASSRGTLVSA 356
PLGSP G E E+PA +P SS G S+
Sbjct: 65 PLGSPIGTTMTEPEPELPANAPPSSAGATASS 96
>07_01_0678 -
5103836-5104613,5104697-5104888,5104994-5105036,
5105712-5105835,5105924-5106016,5106754-5106931,
5107032-5107138,5108098-5108179,5108277-5108314,
5108409-5108495,5109025-5109135,5109282-5109773
Length = 774
Score = 30.7 bits (66), Expect = 2.1
Identities = 15/44 (34%), Positives = 21/44 (47%)
Query: 100 AVPPVEDIAAARQAWVTALNEHIAYSGHYLWAGASPDTAKEATE 143
++PPV +A R WVT L + H++ G P A TE
Sbjct: 202 SIPPVTRMAMGRGTWVTVLCRKLRDWWHWVAEGDIPIVASHGTE 245
>07_03_1091 +
23899825-23900649,23900750-23900998,23901104-23901195,
23901413-23902193
Length = 648
Score = 30.3 bits (65), Expect = 2.7
Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
Query: 322 RRTPLGSPDGDRTPTNEEEVPAVSPASSRGTLVSAGGHVYRNARPYAPCTRRRYVHPNPP 381
R+ + S DG T ++EE S +S+R GG ++ RP AP R V P+
Sbjct: 224 RKVSVTSIDGTSTDDDDEESDVSSLSSARRNWDFTGG--VKDRRPVAPRRRGNSVSPSKS 281
Query: 382 AP 383
P
Sbjct: 282 GP 283
>06_01_0672 -
4903126-4903219,4903322-4903430,4903620-4905096,
4906200-4906538
Length = 672
Score = 30.3 bits (65), Expect = 2.7
Identities = 20/47 (42%), Positives = 25/47 (53%), Gaps = 4/47 (8%)
Query: 306 SPLGAL-SPW--GSSPDLARRTPLGSPDGDRTPTNEEEVPAVSPASS 349
SP GA SP S+PD RR P P+ TP E VP+ + AS+
Sbjct: 153 SPAGAAASPRLSSSNPDARRRAP-PQPEPPSTPRKENRVPSAAAAST 198
>06_01_0727 + 5326085-5326217,5326352-5326478,5326820-5327375
Length = 271
Score = 29.9 bits (64), Expect = 3.6
Identities = 23/83 (27%), Positives = 32/83 (38%), Gaps = 3/83 (3%)
Query: 303 GLSSPLGALSPWGSSPDLARRTPLGSPDGDRTPTNEEEVPAVSPASSRGTLVSAGGHVYR 362
G ++ A S GS+PD AR T S P +++ PA + T +A
Sbjct: 116 GTAATAAAGSRGGSTPDTARATDAAS-SSSVVPPGQQQQPASRADTDTATAAAAAAATTT 174
Query: 363 N--ARPYAPCTRRRYVHPNPPAP 383
A CTR + H AP
Sbjct: 175 TVWAPKAVRCTRGFFFHDRETAP 197
>12_02_1149 -
26467252-26468319,26468452-26469147,26469263-26469409,
26470936-26471274
Length = 749
Score = 29.5 bits (63), Expect = 4.8
Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
Query: 304 LSSPLGALSPWGSSPDLARRT----PLGSPDGDRTPTNEEEVPAVSPASSR 350
L+ L L P SPD ++R+ PL GD P++++EV +V A R
Sbjct: 163 LTLSLVELGPPHQSPDASQRSAVTAPLSPSSGDSVPSSKDEVSSVIKAGLR 213
>03_06_0345 -
33281126-33281783,33281872-33282063,33282175-33282217,
33282751-33282874,33282966-33283058,33284484-33284685,
33284751-33284857,33285462-33285543,33285629-33285666,
33285751-33285837,33286324-33286434,33286554-33286904
Length = 695
Score = 29.5 bits (63), Expect = 4.8
Identities = 13/44 (29%), Positives = 21/44 (47%)
Query: 100 AVPPVEDIAAARQAWVTALNEHIAYSGHYLWAGASPDTAKEATE 143
++PPV +A R W+T L + Y +++ G P A E
Sbjct: 155 SIPPVTRMAMGRGTWITVLCRKLKYWWNWVAEGDLPIVASHGAE 198
>03_05_0333 + 23245139-23245224,23245527-23245633,23246372-23247282
Length = 367
Score = 29.5 bits (63), Expect = 4.8
Identities = 17/57 (29%), Positives = 23/57 (40%), Gaps = 5/57 (8%)
Query: 326 LGSPDGDRTPTNEEEVPAVSPASSRGTLVSAGGHVYRNARPYAPCTRRRYVHPNPPA 382
LG G+ ++ PA P S +S GG ++ A PC P PPA
Sbjct: 289 LGPKHGEPGESSPFPAPAAEPCS-----ISGGGDIFWTASGVVPCPDMAMAFPAPPA 340
>04_04_1454 - 33715782-33715797,33715887-33715918,33716582-33716920
Length = 128
Score = 29.1 bits (62), Expect = 6.3
Identities = 16/41 (39%), Positives = 20/41 (48%)
Query: 342 PAVSPASSRGTLVSAGGHVYRNARPYAPCTRRRYVHPNPPA 382
PA SPAS+RG + A G AR P R++ P A
Sbjct: 43 PAPSPASARGVRIIAAGETSAAARAVPPPPRQQGEPPRAEA 83
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.312 0.125 0.361
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,224,363
Number of Sequences: 37544
Number of extensions: 351403
Number of successful extensions: 799
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 793
Number of HSP's gapped (non-prelim): 11
length of query: 386
length of database: 14,793,348
effective HSP length: 83
effective length of query: 303
effective length of database: 11,677,196
effective search space: 3538190388
effective search space used: 3538190388
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 61 (28.7 bits)
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