GeneModel BLAST Result against fruitfly

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000836-TA|BGIBMGA000836-PA|undefined
         (386 letters)

Database: fruitfly 
           52,641 sequences; 24,830,863 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014297-3684|AAF56376.1| 2768|Drosophila melanogaster CG13648-P...    29   8.2  

>AE014297-3684|AAF56376.1| 2768|Drosophila melanogaster CG13648-PA
            protein.
          Length = 2768

 Score = 29.5 bits (63), Expect = 8.2
 Identities = 16/52 (30%), Positives = 23/52 (44%), Gaps = 2/52 (3%)

Query: 298  TLVTAGLSSPLGALSPWGSSPDLARRTPLGSPDGDRTPTNEEEVPAVSPASS 349
            T+  AG   P  +++P       A   P+  PD D       E+P  +PASS
Sbjct: 1651 TVAPAGEKIPTSSITP--DEEPTATSAPVAKPDEDVEKETSTEIPTDAPASS 1700


  Database: fruitfly
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 24,830,863
  Number of sequences in database:  52,641
  
Lambda     K      H
   0.312    0.125    0.361 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,893,042
Number of Sequences: 52641
Number of extensions: 548967
Number of successful extensions: 1332
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1330
Number of HSP's gapped (non-prelim): 3
length of query: 386
length of database: 24,830,863
effective HSP length: 86
effective length of query: 300
effective length of database: 20,303,737
effective search space: 6091121100
effective search space used: 6091121100
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 63 (29.5 bits)