GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000836-TA|BGIBMGA000836-PA|undefined
         (386 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z50109-6|CAA90439.2|  344|Caenorhabditis elegans Hypothetical pr...    33   0.26 
AC199170-9|ABO33267.1|  388|Caenorhabditis elegans Hypothetical ...    29   7.3  
AC024845-3|AAF60852.1|  619|Caenorhabditis elegans Hypothetical ...    28   9.7  

>Z50109-6|CAA90439.2|  344|Caenorhabditis elegans Hypothetical
           protein C09H10.8 protein.
          Length = 344

 Score = 33.5 bits (73), Expect = 0.26
 Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 1/57 (1%)

Query: 326 LGSPDGDRTPTNEEEVPAVSPASSRGTLVSAGGHVYRNARPYAPCTRRRYVHPNPPA 382
           LGS + + T T  +    ++P   R ++  AGG + RN++ +     RR   PN P+
Sbjct: 233 LGSTESNSTTTTTQPSSPITPYRRR-SMFRAGGALQRNSQDFTALRNRRMSSPNNPS 288


>AC199170-9|ABO33267.1|  388|Caenorhabditis elegans Hypothetical
           protein T08D2.8 protein.
          Length = 388

 Score = 28.7 bits (61), Expect = 7.3
 Identities = 21/70 (30%), Positives = 32/70 (45%), Gaps = 6/70 (8%)

Query: 306 SPLGALSPWGSSPDLARRTP-LGSPDGD----RTPTNEEEVPAVS-PASSRGTLVSAGGH 359
           +P+  ++P    P +AR  P  G P       R P   +  PA + PA+S   ++    +
Sbjct: 271 APVAPVAPVKPKPFVARPAPNFGKPRAAVAPARAPQITQRAPAATRPATSAIRVIPIAPN 330

Query: 360 VYRNARPYAP 369
           V RN  P AP
Sbjct: 331 VVRNGAPAAP 340


>AC024845-3|AAF60852.1|  619|Caenorhabditis elegans Hypothetical
           protein Y65B4BL.2 protein.
          Length = 619

 Score = 28.3 bits (60), Expect = 9.7
 Identities = 17/50 (34%), Positives = 23/50 (46%)

Query: 301 TAGLSSPLGALSPWGSSPDLARRTPLGSPDGDRTPTNEEEVPAVSPASSR 350
           +  +  PL A+S   S    AR TP GS  G R+        A S +S+R
Sbjct: 548 STAICPPLIAMSANSSRATSARTTPAGSSIGSRSSIQSRASAATSVSSNR 597


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.312    0.125    0.361 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,098,054
Number of Sequences: 27539
Number of extensions: 246885
Number of successful extensions: 613
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 612
Number of HSP's gapped (non-prelim): 3
length of query: 386
length of database: 12,573,161
effective HSP length: 83
effective length of query: 303
effective length of database: 10,287,424
effective search space: 3117089472
effective search space used: 3117089472
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 60 (28.3 bits)