Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000835-TA|BGIBMGA000835-PA|undefined
(103 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC336.14c |ppk26||serine/threonine protein kinase Ppk26|Schizo... 28 0.26
SPAC6B12.10c |spp1|pri1|DNA primase catalytic subunit Spp1 |Schi... 27 0.59
SPAC15A10.03c |rhp54|rad54|Rad54 homolog Rhp54|Schizosaccharomyc... 27 0.78
SPBC30B4.03c |||conserved protein |Schizosaccharomyces pombe|chr... 26 1.0
SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces pom... 26 1.4
SPCP25A2.02c |rhp26||SNF2 family helicase Rhp26|Schizosaccharomy... 25 3.1
SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces pomb... 24 4.2
SPAC4H3.14c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 24 4.2
SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple... 24 5.5
SPBC1105.10 |rav1||RAVE complex subunit Rav1 |Schizosaccharomyce... 23 7.3
SPAC12G12.07c |||conserved fungal protein|Schizosaccharomyces po... 23 7.3
SPAC1A6.08c |mug125||sequence orphan|Schizosaccharomyces pombe|c... 23 7.3
SPCC1393.02c |||non-specific DNA binding protein Spt2 |Schizosac... 23 7.3
SPAC22G7.09c |nup45||nucleoporin Nup45|Schizosaccharomyces pombe... 23 7.3
SPAC23H4.12 |alp13||Clr6 histone deacetylase complex subunit Alp... 23 9.6
SPCC965.09 |||nitrilase |Schizosaccharomyces pombe|chr 3|||Manual 23 9.6
>SPBC336.14c |ppk26||serine/threonine protein kinase
Ppk26|Schizosaccharomyces pombe|chr 2|||Manual
Length = 589
Score = 28.3 bits (60), Expect = 0.26
Identities = 15/51 (29%), Positives = 24/51 (47%)
Query: 25 YSMYVGSDGDVESARPSERQTGGQFVEELTREIDQRQQRQSTAPPFLLQSI 75
Y++Y + + P ER G F+++ TRE +R+ S L SI
Sbjct: 163 YNLYNPQPSPMPTLLPYERTVNGLFIDDTTRERIERKSEASRQTISALPSI 213
>SPAC6B12.10c |spp1|pri1|DNA primase catalytic subunit Spp1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 454
Score = 27.1 bits (57), Expect = 0.59
Identities = 13/54 (24%), Positives = 26/54 (48%)
Query: 50 VEELTREIDQRQQRQSTAPPFLLQSIEENKKKSRNLYNPTANGRQSDTNPNFIY 103
V +L +E+D+ Q + P + + EN+K + + +G + NP +Y
Sbjct: 377 VNDLLQELDKNSQNDNGHGPTMETNTTENQKDNARGQSNKGHGFSTSLNPYTLY 430
>SPAC15A10.03c |rhp54|rad54|Rad54 homolog
Rhp54|Schizosaccharomyces pombe|chr 1|||Manual
Length = 852
Score = 26.6 bits (56), Expect = 0.78
Identities = 16/49 (32%), Positives = 24/49 (48%)
Query: 15 VPDEELSRRGYSMYVGSDGDVESARPSERQTGGQFVEELTREIDQRQQR 63
+P + R YS Y DG +SA SE +G ++E R I ++R
Sbjct: 51 LPLRKKPRVNYSEYGSVDGKYDSAYVSENVSGLATIKEANRLILNHERR 99
Score = 23.4 bits (48), Expect = 7.3
Identities = 11/51 (21%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Query: 9 FHNPGLVPDEELSRRGYSMYVGSDGDVESARPSERQTGGQFVEELTREIDQ 59
F NPGL+ + R+ Y + + D + +++ G + EL + +++
Sbjct: 455 FANPGLLGSRQEFRKNYEIPILKGRDADGTE-KDKENGDAKLAELAKIVNR 504
>SPBC30B4.03c |||conserved protein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 391
Score = 26.2 bits (55), Expect = 1.0
Identities = 12/37 (32%), Positives = 19/37 (51%), Gaps = 5/37 (13%)
Query: 65 STAPPFLLQSIEENKKKSRNLYNPTANGRQSDTNPNF 101
++ PP+ LQ I K + ++P G + NPNF
Sbjct: 346 ASVPPYSLQGI-----KRQGTHSPMVEGENPNNNPNF 377
>SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1562
Score = 25.8 bits (54), Expect = 1.4
Identities = 10/45 (22%), Positives = 24/45 (53%)
Query: 37 SARPSERQTGGQFVEELTREIDQRQQRQSTAPPFLLQSIEENKKK 81
++RPS + ++ +T +D+R+++ P SI E +++
Sbjct: 919 ASRPSLSRRRNDYINNVTSWLDERREKMGVVRPRASTSILETRRR 963
>SPCP25A2.02c |rhp26||SNF2 family helicase
Rhp26|Schizosaccharomyces pombe|chr 3|||Manual
Length = 973
Score = 24.6 bits (51), Expect = 3.1
Identities = 19/74 (25%), Positives = 34/74 (45%), Gaps = 6/74 (8%)
Query: 26 SMYVGSDG-DVESARPSERQTGGQFVEELTREIDQRQQRQSTAPPFLLQSIEENKKKSRN 84
S Y+ + ++E R + + V+E R +D+R + T S++EN +K +
Sbjct: 29 SEYIAHESREIEKKRLQKVRKEISSVKEKIRRLDERIDSRLTKI-----SVKENFRKQLS 83
Query: 85 LYNPTANGRQSDTN 98
+ T QSD N
Sbjct: 84 KFRDTLQSLQSDEN 97
>SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1334
Score = 24.2 bits (50), Expect = 4.2
Identities = 15/43 (34%), Positives = 19/43 (44%), Gaps = 2/43 (4%)
Query: 60 RQQRQSTAPPFLLQSIEENKKKSRNLYNPTANGRQSDTNPNFI 102
+QQR P +S + KSR N N R S T P F+
Sbjct: 355 KQQRLGVEPT--ARSFTLSSYKSRASGNSLINDRSSTTTPTFV 395
>SPAC4H3.14c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 345
Score = 24.2 bits (50), Expect = 4.2
Identities = 14/64 (21%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Query: 18 EELSRRGYSMYVGSDGDVESARPSERQ-TGGQFVEELTREIDQRQQRQSTAPPFLLQSIE 76
E+L+ + Y+G + A+ R+ + GQ + + EID+ ++ L+Q +
Sbjct: 38 EKLTDHIEATYIGRGVPHDHAKTGSRKPSSGQLIATMQNEIDRLKKEGDKVSILLMQERK 97
Query: 77 ENKK 80
+ K+
Sbjct: 98 KRKE 101
>SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex
subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1522
Score = 23.8 bits (49), Expect = 5.5
Identities = 9/22 (40%), Positives = 14/22 (63%)
Query: 75 IEENKKKSRNLYNPTANGRQSD 96
+E KK +NL N + NG++ D
Sbjct: 1355 VESIGKKGKNLLNESGNGKKLD 1376
>SPBC1105.10 |rav1||RAVE complex subunit Rav1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1297
Score = 23.4 bits (48), Expect = 7.3
Identities = 11/30 (36%), Positives = 13/30 (43%)
Query: 73 QSIEENKKKSRNLYNPTANGRQSDTNPNFI 102
Q I ENK RN N + +P FI
Sbjct: 1162 QEIHENKDSQRNSTNEPVRNKFPSDDPAFI 1191
>SPAC12G12.07c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 412
Score = 23.4 bits (48), Expect = 7.3
Identities = 20/71 (28%), Positives = 32/71 (45%), Gaps = 8/71 (11%)
Query: 14 LVPDEELSRRGYSMYVGSDGDVESARPSERQTGGQFVEELTREIDQRQQRQSTAPPFLLQ 73
+VP+ E+S + S V D + PSE+ EEL + Q Q+ P Q
Sbjct: 182 VVPESEVSFQTISSRV--DNFFAAPLPSEQ------AEELIEDDYAEQPEQAVGQPIEQQ 233
Query: 74 SIEENKKKSRN 84
SI +++ + N
Sbjct: 234 SISDDEARQTN 244
>SPAC1A6.08c |mug125||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 285
Score = 23.4 bits (48), Expect = 7.3
Identities = 9/29 (31%), Positives = 17/29 (58%)
Query: 72 LQSIEENKKKSRNLYNPTANGRQSDTNPN 100
++S N+K++ N Y T + D+NP+
Sbjct: 146 IESWSLNQKQNENFYEHTHLNSRDDSNPS 174
>SPCC1393.02c |||non-specific DNA binding protein Spt2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 406
Score = 23.4 bits (48), Expect = 7.3
Identities = 14/59 (23%), Positives = 24/59 (40%)
Query: 38 ARPSERQTGGQFVEELTREIDQRQQRQSTAPPFLLQSIEENKKKSRNLYNPTANGRQSD 96
++ +ERQ + EL R+ T+ LLQS ++ + + P N D
Sbjct: 107 SKKNERQGKPRSYNELLRQASSAPAVNETSSSGLLQSKDKRSQSPHSPKKPVKNSSSRD 165
>SPAC22G7.09c |nup45||nucleoporin Nup45|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 425
Score = 23.4 bits (48), Expect = 7.3
Identities = 14/51 (27%), Positives = 25/51 (49%)
Query: 45 TGGQFVEELTREIDQRQQRQSTAPPFLLQSIEENKKKSRNLYNPTANGRQS 95
T + VE + ++ + Q+R S+ LL +E + R + T+N R S
Sbjct: 269 TVSELVESVPNDVAEVQRRLSSVSTALLIDSDEIETTKRVVDEDTSNARIS 319
>SPAC23H4.12 |alp13||Clr6 histone deacetylase complex subunit
Alp13|Schizosaccharomyces pombe|chr 1|||Manual
Length = 337
Score = 23.0 bits (47), Expect = 9.6
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 71 LLQSIEENKKKSRNLYNPTANGRQSDTN 98
+LQ EEN K + L N + RQ T+
Sbjct: 56 ILQWTEENLKTQKELKNAAISTRQKPTS 83
>SPCC965.09 |||nitrilase |Schizosaccharomyces pombe|chr 3|||Manual
Length = 272
Score = 23.0 bits (47), Expect = 9.6
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 17 DEELSRRGYSMYVGSDGDVESARPSERQ 44
DE+LS G+S +G G V A E++
Sbjct: 208 DEKLSFFGHSKIIGPTGKVIKALDEEKE 235
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.309 0.128 0.363
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 538,786
Number of Sequences: 5004
Number of extensions: 19975
Number of successful extensions: 50
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 38
Number of HSP's gapped (non-prelim): 17
length of query: 103
length of database: 2,362,478
effective HSP length: 63
effective length of query: 40
effective length of database: 2,047,226
effective search space: 81889040
effective search space used: 81889040
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)
S2: 47 (23.0 bits)
- SilkBase 1999-2023 -