Silkworm BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000835-TA|BGIBMGA000835-PA|undefined
         (103 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     25   0.14 
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    24   0.43 
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   2.3  
AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C prot...    21   3.0  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    21   4.0  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   4.0  

>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 25.4 bits (53), Expect = 0.14
 Identities = 10/32 (31%), Positives = 18/32 (56%)

Query: 68  PPFLLQSIEENKKKSRNLYNPTANGRQSDTNP 99
           PP  ++  EE KKK++   +P+ N  + +  P
Sbjct: 530 PPSSMKETEEEKKKTKQSLSPSENQSKMEILP 561


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 23.8 bits (49), Expect = 0.43
 Identities = 20/53 (37%), Positives = 26/53 (49%), Gaps = 9/53 (16%)

Query: 47  GQFVEELT--REIDQRQQRQSTAPPFLLQSIEENKKKSRNLYNPTANGRQSDT 97
           G    ELT  +EI  RQ+R+S   P+L     EN  K   +Y     GR SD+
Sbjct: 449 GFLAGELTYSQEIGDRQERESELVPYL-----EN--KGNGVYAWIGAGRDSDS 494


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect = 2.3
 Identities = 11/44 (25%), Positives = 21/44 (47%)

Query: 48   QFVEELTREIDQRQQRQSTAPPFLLQSIEENKKKSRNLYNPTAN 91
            +F+E  T  I       S     ++  + E+KKK++  +N  +N
Sbjct: 1468 RFIEVATNSITLHLNAWSDGGCPMIYFVVEHKKKNQQEWNQVSN 1511


>AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C
          protein.
          Length = 149

 Score = 21.0 bits (42), Expect = 3.0
 Identities = 8/17 (47%), Positives = 12/17 (70%)

Query: 57 IDQRQQRQSTAPPFLLQ 73
          +++R    ST PPFL+Q
Sbjct: 33 VEKRVLALSTKPPFLVQ 49


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 20.6 bits (41), Expect = 4.0
 Identities = 13/55 (23%), Positives = 26/55 (47%), Gaps = 3/55 (5%)

Query: 45  TGGQFVEELTREIDQRQQRQSTAPPFLLQSIEENKKKSRNLYNPTANGRQSDTNP 99
           TG +  ++  ++  Q+QQ+Q ++  +L+     N   S   Y   A    + T+P
Sbjct: 791 TGARQQQQQQQQQQQQQQQQQSSSDYLMVG---NSPASSPRYLSAAATSSTSTSP 842


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 20.6 bits (41), Expect = 4.0
 Identities = 9/31 (29%), Positives = 17/31 (54%)

Query: 38  ARPSERQTGGQFVEELTREIDQRQQRQSTAP 68
           A+P ++Q   Q   +  ++  Q+QQ+Q   P
Sbjct: 828 AQPQQQQQQQQQQPQQQQQQQQQQQQQQRGP 858


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.309    0.128    0.363 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 34,983
Number of Sequences: 429
Number of extensions: 1669
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of query: 103
length of database: 140,377
effective HSP length: 49
effective length of query: 54
effective length of database: 119,356
effective search space:  6445224
effective search space used:  6445224
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (19.9 bits)
S2: 38 (19.4 bits)