Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000835-TA|BGIBMGA000835-PA|undefined
(103 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g55730.1 68416.m06191 myb family transcription factor (MYB109... 33 0.027
At5g60830.1 68418.m07631 bZIP transcription factor family protei... 31 0.11
At2g46810.1 68415.m05841 basic helix-loop-helix (bHLH) family pr... 29 0.45
At1g26670.1 68414.m03249 vesical transport v-SNARE 12 (VTI12) / ... 28 1.0
At5g38740.1 68418.m04685 MADS-box family protein contains simila... 27 2.4
At2g43410.1 68415.m05395 RNA recognition motif (RRM)-containing ... 27 2.4
At2g04280.1 68415.m00420 expressed protein 27 2.4
At1g27580.1 68414.m03361 F-box family protein similar to F-box p... 27 2.4
At5g24440.1 68418.m02880 RNA-binding protein, putative 27 3.2
At1g28160.1 68414.m03456 ethylene-responsive element-binding fam... 27 3.2
At5g25060.1 68418.m02970 RNA recognition motif (RRM)-containing ... 26 4.2
At5g11900.1 68418.m01392 eukaryotic translation initiation facto... 26 4.2
At3g16340.1 68416.m02066 ABC transporter family protein similar ... 26 4.2
At1g79280.1 68414.m09242 expressed protein weak similarity to Nu... 26 4.2
At1g66090.1 68414.m07501 disease resistance protein (TIR-NBS cla... 26 4.2
At1g48760.2 68414.m05457 delta-adaptin, putative similar to SP|O... 26 4.2
At1g48760.1 68414.m05456 delta-adaptin, putative similar to SP|O... 26 4.2
At5g42750.1 68418.m05206 expressed protein 26 5.5
At3g46740.1 68416.m05074 chloroplast outer envelope protein, put... 26 5.5
At1g27560.1 68414.m03359 F-box family protein-related similar to... 26 5.5
At1g21700.1 68414.m02717 SWIRM domain-containing protein / DNA-b... 26 5.5
At5g41140.1 68418.m05001 expressed protein 25 7.3
At3g27130.1 68416.m03394 hypothetical protein 25 7.3
At3g06970.1 68416.m00828 RNA recognition motif (RRM)-containing ... 25 7.3
At1g53090.2 68414.m06012 WD-40 repeat family protein / phytochro... 25 7.3
At1g53090.1 68414.m06011 WD-40 repeat family protein / phytochro... 25 7.3
At5g40860.1 68418.m04962 hypothetical protein 25 9.6
At4g24970.1 68417.m03578 ATP-binding region, ATPase-like domain-... 25 9.6
At4g22190.1 68417.m03208 expressed protein 25 9.6
At4g12700.1 68417.m01994 expressed protein 25 9.6
At3g53480.1 68416.m05904 ABC transporter family protein PDR5-lik... 25 9.6
At3g01460.1 68416.m00070 PHD finger family protein / methyl-CpG ... 25 9.6
At1g71697.1 68414.m08288 choline kinase, putative similar to GmC... 25 9.6
At1g60560.2 68414.m06818 SWIM zinc finger family protein contain... 25 9.6
At1g60560.1 68414.m06817 SWIM zinc finger family protein contain... 25 9.6
At1g24706.1 68414.m03104 expressed protein 25 9.6
>At3g55730.1 68416.m06191 myb family transcription factor (MYB109)
contains Pfam profile: PF00249 myb-like DNA-binding
domain
Length = 399
Score = 33.5 bits (73), Expect = 0.027
Identities = 21/68 (30%), Positives = 30/68 (44%), Gaps = 6/68 (8%)
Query: 33 GDVESARPSERQTGGQFVEELTREIDQRQQRQSTAPPFLLQSIEENKKKSRNLYNPTAN- 91
GD+ S+ P Q +EE E + Q++Q APP + N N++ P A
Sbjct: 197 GDINSSPPKPPQVSDVVMEEAANEPQEPQEQQEQAPP-----VVSNVPTENNVFRPVARV 251
Query: 92 GRQSDTNP 99
G S NP
Sbjct: 252 GAFSIYNP 259
>At5g60830.1 68418.m07631 bZIP transcription factor family protein
contains Pfam profile: PF00170 bZIP transcription factor
Length = 206
Score = 31.5 bits (68), Expect = 0.11
Identities = 22/78 (28%), Positives = 38/78 (48%), Gaps = 8/78 (10%)
Query: 1 MNSDKNHAFHNPGLVPDEELSRRGYSMYVGSDGDVESARPSERQTGGQFVEELTREIDQR 60
++ + + FHN GL P+E +RR S + ESAR S + Q +EEL ++++Q
Sbjct: 53 LDPNAENIFHNEGLAPEERRARRMVS-------NRESARRSRMRKKKQ-IEELQQQVEQL 104
Query: 61 QQRQSTAPPFLLQSIEEN 78
++ +E N
Sbjct: 105 MMLNHHLSEKVINLLESN 122
>At2g46810.1 68415.m05841 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 371
Score = 29.5 bits (63), Expect = 0.45
Identities = 20/80 (25%), Positives = 39/80 (48%), Gaps = 9/80 (11%)
Query: 1 MNSDKNHAFHNPGLV-PDEELSRRGYSMYVGSDGDVESARPSERQTGGQFVEELTREIDQ 59
++S+ NH +HNP L +E +S + +E+AR ++ +TRE
Sbjct: 121 IHSETNHYYHNPSLEGVNEAISNQELPF-----NPLENARSRRKRKNNNLASLMTRE--- 172
Query: 60 RQQRQSTAPPFLLQSIEENK 79
+++R+ T P ++ IE +
Sbjct: 173 KRKRRRTKPTKNIEEIESQR 192
>At1g26670.1 68414.m03249 vesical transport v-SNARE 12 (VTI12) /
vesicle soluble NSF attachment protein receptor VTI1b
(VTI1B) receptor VTI1b identical to SP|Q9SEL5 Vesicle
transport v-SNARE 12 (AtVTI12) (Vesicle transport
v-SNARE protein VTI1b) (Vesicle soluble NSF attachment
protein receptor VTI1b) (AtVTI1b) {Arabidopsis thaliana}
Length = 222
Score = 28.3 bits (60), Expect = 1.0
Identities = 20/82 (24%), Positives = 38/82 (46%), Gaps = 1/82 (1%)
Query: 20 LSRRGYSMYVGSDGDVESARPSERQTGGQFVEELTREID-QRQQRQSTAPPFLLQSIEEN 78
LSR+ +S V S+G+ + + +E ++G + L R++D + + Q +A L + E
Sbjct: 19 LSRKCHSASVLSNGEEKKGKIAEIKSGIDEADVLIRKMDLEARSLQPSAKAVCLSKLREY 78
Query: 79 KKKSRNLYNPTANGRQSDTNPN 100
K L +D P+
Sbjct: 79 KSDLNQLKKEFKRVSSADAKPS 100
>At5g38740.1 68418.m04685 MADS-box family protein contains
similarity to hypothetical proteins of [Arabidopsis
thaliana]
Length = 426
Score = 27.1 bits (57), Expect = 2.4
Identities = 19/76 (25%), Positives = 33/76 (43%), Gaps = 5/76 (6%)
Query: 27 MYVGSDGDVESARPSERQTGGQFVEELTREIDQRQQRQSTAPPFLLQSIEENKKKSRNLY 86
+Y G DG++++ P ER+ V ++ +Q + L KKK++ L
Sbjct: 54 IYYGPDGELKTW-PKEREK----VRDIALRFNQLNEALRHKKSVNLHGFLNKKKKNKGLK 108
Query: 87 NPTANGRQSDTNPNFI 102
NP + S N N +
Sbjct: 109 NPNKKKKTSLKNVNVL 124
>At2g43410.1 68415.m05395 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 1056
Score = 27.1 bits (57), Expect = 2.4
Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
Query: 31 SDGDVESARPSERQTGGQFVEELTREIDQRQQRQSTAPP 69
+DG+V+ + Q+ QF L +I Q+QQ+QS+ P
Sbjct: 1015 TDGEVD--KNQRYQSTLQFAANLLLQIQQKQQQQSSGTP 1051
>At2g04280.1 68415.m00420 expressed protein
Length = 568
Score = 27.1 bits (57), Expect = 2.4
Identities = 12/34 (35%), Positives = 20/34 (58%)
Query: 66 TAPPFLLQSIEENKKKSRNLYNPTANGRQSDTNP 99
T+P LL ++++ ++ R+LY T G S NP
Sbjct: 455 TSPSALLSTLQDKVEEGRHLYIATNEGELSFFNP 488
>At1g27580.1 68414.m03361 F-box family protein similar to F-box
protein family, AtFBX7 (GI:20197899) [Arabidopsis
thaliana]; confirmed by FLcDNA GI:16604421; contains
uncharacterized Arabidoppsis domain shared by 33
Arabidopsis proteins;simlar to unknown protein
GB:AAC63676
Length = 364
Score = 27.1 bits (57), Expect = 2.4
Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Query: 62 QRQSTAPPFLLQSIEENKKKSRNLYNPTANGRQSDTNPNF 101
QR P L+ S E++ +S ++YNP N R +T +F
Sbjct: 21 QRPKARSPLLMLSAEKDGCRSNSVYNP-YNDRVYETKSDF 59
>At5g24440.1 68418.m02880 RNA-binding protein, putative
Length = 320
Score = 26.6 bits (56), Expect = 3.2
Identities = 16/53 (30%), Positives = 24/53 (45%)
Query: 34 DVESARPSERQTGGQFVEELTREIDQRQQRQSTAPPFLLQSIEENKKKSRNLY 86
D E AR + R++G F R + P FL QS +E +K + +Y
Sbjct: 185 DAEGARSALRKSGTMFGSHPIRVFMSKTAIAPVNPSFLPQSKDELEKCGKTVY 237
>At1g28160.1 68414.m03456 ethylene-responsive element-binding family
protein contains similarity to ethylene-responsive
element binding factor GI:8809573 from (Nicotiana
sylvestris)
Length = 245
Score = 26.6 bits (56), Expect = 3.2
Identities = 14/55 (25%), Positives = 24/55 (43%)
Query: 41 SERQTGGQFVEELTREIDQRQQRQSTAPPFLLQSIEENKKKSRNLYNPTANGRQS 95
S+ G ++ + QR + PP L++ N + NLY+ T N Q+
Sbjct: 97 SDMPRGSSVTSFVSPDESQRFISELFNPPSQLEATNSNNNNNNNLYSSTNNQNQN 151
>At5g25060.1 68418.m02970 RNA recognition motif (RRM)-containing
protein KIAA0332 - Homo sapiens, EMBL:AB002330
Length = 946
Score = 26.2 bits (55), Expect = 4.2
Identities = 19/64 (29%), Positives = 28/64 (43%), Gaps = 6/64 (9%)
Query: 2 NSDKNHAFHNPGLVPDEELSRRGYSMYVGSDGDVESARPSERQTGGQFVEELTREIDQRQ 61
+S K H N P + S R +G D D E R +RQ +L R+ D+R+
Sbjct: 867 SSKKRHRGENKSQSPPRKSSTRERDHDLGRDRDRERHRDRDRQ------HDLNRDRDRRE 920
Query: 62 QRQS 65
+ S
Sbjct: 921 KSSS 924
>At5g11900.1 68418.m01392 eukaryotic translation initiation factor
SUI1 family protein similar to SP|O43583
Density-regulated protein (DRP1 protein) (Smooth muscle
cell associated protein-3) {Homo sapiens}; contains Pfam
profile PF01253: Translation initiation factor SUI1
Length = 198
Score = 26.2 bits (55), Expect = 4.2
Identities = 13/51 (25%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Query: 31 SDGDVESARPSERQTGGQFVEELTREIDQRQQRQSTAPPFLLQSIEENKKK 81
S G + A PS QTGG +E + + + ++ +++ + NK+K
Sbjct: 69 SSGGADGA-PSSAQTGGTSKKEEVKRLPGGKVKKKDRQEVIIEKVVRNKRK 118
>At3g16340.1 68416.m02066 ABC transporter family protein similar to
PDR5-like ABC transporter GI:1514643 from [Spirodela
polyrhiza]; contains Pfam profile: PF00005 ABC
transporter
Length = 1416
Score = 26.2 bits (55), Expect = 4.2
Identities = 12/45 (26%), Positives = 22/45 (48%)
Query: 42 ERQTGGQFVEELTREIDQRQQRQSTAPPFLLQSIEENKKKSRNLY 86
+R+ F++E+T DQ Q + P+ S+ E K+ R +
Sbjct: 420 DRKGTADFLQEVTSRKDQEQYWADSKKPYSYISVSEFSKRFRTFH 464
>At1g79280.1 68414.m09242 expressed protein weak similarity to
Nucleoprotein TPR (Swiss-Prot:P12270) [Homo sapiens]
Length = 2111
Score = 26.2 bits (55), Expect = 4.2
Identities = 17/68 (25%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
Query: 18 EELSRRGYSMYVGSDGDVESARPSERQTGGQFVEELTREIDQRQQRQSTAPPFLLQSIEE 77
+ELS++ S+ + E A +R T VE+ +E +++++R ++ Q +E
Sbjct: 1476 DELSKQNQSLAKQLEEAKEEA--GKRTTTDAVVEQSVKEREEKEKRIQILDKYVHQLKDE 1533
Query: 78 NKKKSRNL 85
+KK+ +L
Sbjct: 1534 VRKKTEDL 1541
>At1g66090.1 68414.m07501 disease resistance protein (TIR-NBS
class), putative domain signature TIR-NBS exists,
suggestive of a disease resistance protein.
Length = 429
Score = 26.2 bits (55), Expect = 4.2
Identities = 11/22 (50%), Positives = 14/22 (63%)
Query: 58 DQRQQRQSTAPPFLLQSIEENK 79
DQR +R T P L Q+I E+K
Sbjct: 59 DQRMERSQTLAPTLTQAIRESK 80
>At1g48760.2 68414.m05457 delta-adaptin, putative similar to
SP|O14617 Adapter-related protein complex 3 delta 1
subunit (Delta-adaptin 3) {Homo sapiens}; contains Pfam
profile: PF01602 Adaptin N terminal region
Length = 869
Score = 26.2 bits (55), Expect = 4.2
Identities = 11/41 (26%), Positives = 20/41 (48%)
Query: 58 DQRQQRQSTAPPFLLQSIEENKKKSRNLYNPTANGRQSDTN 98
DQ++ S++PP S+ +K +Y T+ D+N
Sbjct: 682 DQQEATSSSSPPHEASSLLAEHRKRHGMYYLTSQKEDQDSN 722
>At1g48760.1 68414.m05456 delta-adaptin, putative similar to
SP|O14617 Adapter-related protein complex 3 delta 1
subunit (Delta-adaptin 3) {Homo sapiens}; contains Pfam
profile: PF01602 Adaptin N terminal region
Length = 869
Score = 26.2 bits (55), Expect = 4.2
Identities = 11/41 (26%), Positives = 20/41 (48%)
Query: 58 DQRQQRQSTAPPFLLQSIEENKKKSRNLYNPTANGRQSDTN 98
DQ++ S++PP S+ +K +Y T+ D+N
Sbjct: 682 DQQEATSSSSPPHEASSLLAEHRKRHGMYYLTSQKEDQDSN 722
>At5g42750.1 68418.m05206 expressed protein
Length = 337
Score = 25.8 bits (54), Expect = 5.5
Identities = 14/41 (34%), Positives = 18/41 (43%)
Query: 54 TREIDQRQQRQSTAPPFLLQSIEENKKKSRNLYNPTANGRQ 94
+ E +Q QQ+Q P L KK R L+ NG Q
Sbjct: 184 SNEREQEQQQQKIKKPMSLDLSHAVKKYIRMLFQKRGNGTQ 224
>At3g46740.1 68416.m05074 chloroplast outer envelope protein,
putative similar to chloroplastic outer envelope
membrane protein (OEP75) [Pisum sativum] GI:633607;
contains Pfam profile PF01103: outer membrane protein,
OMP85 family
Length = 818
Score = 25.8 bits (54), Expect = 5.5
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 39 RPSERQTGGQFVEELTREIDQRQQRQST 66
RP E+ GG VE +E++Q+ ST
Sbjct: 430 RPDEKNEGGIIVEIKLKELEQKSAEVST 457
>At1g27560.1 68414.m03359 F-box family protein-related similar to
F-box protein family, AtFBX7 (GI:20197899) [Arabidopsis
thaliana]
Length = 358
Score = 25.8 bits (54), Expect = 5.5
Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Query: 62 QRQSTAPPFLLQSIEENKKKSRNLYNPTANGRQSDTNPNF 101
QR T P L+ S E++ + ++YNP +GR + +F
Sbjct: 19 QRPKTGSPLLMLSSEKDGCRCNSVYNP-EDGRVYEPKSDF 57
>At1g21700.1 68414.m02717 SWIRM domain-containing protein /
DNA-binding family protein contains similarity to
SWI/SNF complex 170 KDa subunit [Homo sapiens]
gi|1549241|gb|AAC50694; contains Pfam domain PF04433:
SWIRM domain, PF00249: Myb-like DNA-binding domain
Length = 807
Score = 25.8 bits (54), Expect = 5.5
Identities = 10/42 (23%), Positives = 20/42 (47%)
Query: 45 TGGQFVEELTREIDQRQQRQSTAPPFLLQSIEENKKKSRNLY 86
TGG + L + Q+QQ +T+ P ++ N + ++
Sbjct: 680 TGGNNINSLMHQQHQQQQASATSQPSIIPGFSNNPQVQAQMH 721
>At5g41140.1 68418.m05001 expressed protein
Length = 983
Score = 25.4 bits (53), Expect = 7.3
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 34 DVESARPSERQTGGQFVEELTREIDQRQ 61
D+E R S +T EEL R ID+++
Sbjct: 746 DLEETRKSSMETEASLSEELQRIIDEKE 773
>At3g27130.1 68416.m03394 hypothetical protein
Length = 366
Score = 25.4 bits (53), Expect = 7.3
Identities = 18/74 (24%), Positives = 32/74 (43%), Gaps = 4/74 (5%)
Query: 29 VGSDGDVESARPSERQTGGQFVEELTREIDQRQQRQSTAPPFLLQSIEENKKKSRNLYNP 88
+ +DG+V+ + G ++ E+D RQ+R ST P S + +K Y
Sbjct: 262 LANDGEVKE----DGAPNGFVSAKIKLEMDVRQKRGSTESPSSCLSPQSDKNALGRGYGS 317
Query: 89 TANGRQSDTNPNFI 102
+ G + NF+
Sbjct: 318 RSGGLRRGYRSNFV 331
>At3g06970.1 68416.m00828 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 272
Score = 25.4 bits (53), Expect = 7.3
Identities = 12/50 (24%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Query: 17 DEELSRRGYSMYVGSDGDV-ESARPSERQTGGQFVEELTREIDQRQQRQS 65
D++ ++ +G DGD+ + AR E + Q + + +++D+ Q + S
Sbjct: 171 DQQKAKNVKGKNIGQDGDIKQDARDQEEKINDQ-EDSIKQDVDEEQNKIS 219
>At1g53090.2 68414.m06012 WD-40 repeat family protein / phytochrome
A-related contains 7 WD-40 repeats (PF00400) (1 below
cutoff); similar to phytochrome A supressor spa1
(GI:4809171) [Arabidopsis thaliana]
Length = 794
Score = 25.4 bits (53), Expect = 7.3
Identities = 13/43 (30%), Positives = 19/43 (44%)
Query: 33 GDVESARPSERQTGGQFVEELTREIDQRQQRQSTAPPFLLQSI 75
G E A R+ G EE+ E +QQ + PF ++ I
Sbjct: 131 GSDEDATTKSREIGSSRQEEILSERRSKQQEEVKKQPFPMKQI 173
>At1g53090.1 68414.m06011 WD-40 repeat family protein / phytochrome
A-related contains 7 WD-40 repeats (PF00400) (1 below
cutoff); similar to phytochrome A supressor spa1
(GI:4809171) [Arabidopsis thaliana]
Length = 794
Score = 25.4 bits (53), Expect = 7.3
Identities = 13/43 (30%), Positives = 19/43 (44%)
Query: 33 GDVESARPSERQTGGQFVEELTREIDQRQQRQSTAPPFLLQSI 75
G E A R+ G EE+ E +QQ + PF ++ I
Sbjct: 131 GSDEDATTKSREIGSSRQEEILSERRSKQQEEVKKQPFPMKQI 173
>At5g40860.1 68418.m04962 hypothetical protein
Length = 184
Score = 25.0 bits (52), Expect = 9.6
Identities = 15/53 (28%), Positives = 27/53 (50%)
Query: 36 ESARPSERQTGGQFVEELTREIDQRQQRQSTAPPFLLQSIEENKKKSRNLYNP 88
E R S R+ +EE + ++ ++ S L+ IEE+ K+ +NL +P
Sbjct: 100 ELFRDSIREERAVILEESSEYQSEKSKKSSCDNSGELKVIEESVKEKKNLKSP 152
>At4g24970.1 68417.m03578 ATP-binding region, ATPase-like
domain-containing protein low similarity to microrchidia
[Mus musculus] GI:5410255; contains Pfam profile
PF02518: ATPase, histidine kinase-, DNA gyrase B-, and
HSP90-like domain protein
Length = 707
Score = 25.0 bits (52), Expect = 9.6
Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Query: 46 GGQFVEELTREIDQRQQRQSTAPPFLLQSIEENKKKSRNL 85
G + EEL RE ++R+ + Q IEE KK+ NL
Sbjct: 620 GARLQEELRREKERRKALEVEVQ-LSRQKIEEMKKEQENL 658
>At4g22190.1 68417.m03208 expressed protein
Length = 387
Score = 25.0 bits (52), Expect = 9.6
Identities = 20/76 (26%), Positives = 37/76 (48%), Gaps = 8/76 (10%)
Query: 31 SDGDVESARPSERQTGGQFVEELTRE--IDQRQQ----RQSTAPPFLLQSIEENKKKSRN 84
S G + + + S+ + G ELTRE + +R + + T PP + ++ENKK+ +
Sbjct: 140 STGSLITEQKSDLEPG--LGSELTRETTVSKRWRDIFRKSETKPPGKKEKVKENKKEKKK 197
Query: 85 LYNPTANGRQSDTNPN 100
+ ++G S N
Sbjct: 198 TGSGPSSGSGSGAELN 213
>At4g12700.1 68417.m01994 expressed protein
Length = 561
Score = 25.0 bits (52), Expect = 9.6
Identities = 11/36 (30%), Positives = 20/36 (55%)
Query: 64 QSTAPPFLLQSIEENKKKSRNLYNPTANGRQSDTNP 99
+ T+P +L ++++ ++ RNLY T S NP
Sbjct: 446 KDTSPSSILSTLQDKIEQGRNLYIATNEPELSFFNP 481
>At3g53480.1 68416.m05904 ABC transporter family protein PDR5-like
ABC transporter, Spirodela polyrrhiza, EMBL:Z70524
Length = 1450
Score = 25.0 bits (52), Expect = 9.6
Identities = 22/78 (28%), Positives = 35/78 (44%), Gaps = 6/78 (7%)
Query: 14 LVPDEELSRRGYSMYVGSDGDVESA------RPSERQTGGQFVEELTREIDQRQQRQSTA 67
L D L +G +Y G G+V + R ER+ F++E+ + DQ Q
Sbjct: 413 LFDDIMLMAKGRIVYHGPRGEVLNFFEDCGFRCPERKGVADFLQEVISKKDQAQYWWHED 472
Query: 68 PPFLLQSIEENKKKSRNL 85
P+ S+E KK ++L
Sbjct: 473 LPYSFVSVEMLSKKFKDL 490
>At3g01460.1 68416.m00070 PHD finger family protein / methyl-CpG
binding domain-containing protein contains Pfam profiles
PF00628: PHD-finger (2 copies), PF01429: Methyl-CpG
binding domain
Length = 2176
Score = 25.0 bits (52), Expect = 9.6
Identities = 12/31 (38%), Positives = 19/31 (61%)
Query: 19 ELSRRGYSMYVGSDGDVESARPSERQTGGQF 49
EL+RR + DG++ESA + R++G F
Sbjct: 944 ELARRYILSLLSMDGNLESAEIAARESGKVF 974
>At1g71697.1 68414.m08288 choline kinase, putative similar to GmCK2p
choline kinase gi|1438881|gb|AAC49375
Length = 346
Score = 25.0 bits (52), Expect = 9.6
Identities = 16/42 (38%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Query: 2 NSDKNHAFHNPGLVPDEELSRRGYSMYVGSDGDVESARPSER 43
+SD H L P E RR S Y+GS G+ S + ER
Sbjct: 252 HSDTPHVLDYT-LYPGEGERRRFISTYLGSTGNATSDKEVER 292
>At1g60560.2 68414.m06818 SWIM zinc finger family protein contains
Pfam domain PF04434: SWIM zinc finger
Length = 500
Score = 25.0 bits (52), Expect = 9.6
Identities = 14/51 (27%), Positives = 22/51 (43%), Gaps = 3/51 (5%)
Query: 15 VPDEELSRR---GYSMYVGSDGDVESARPSERQTGGQFVEELTREIDQRQQ 62
+P+E + + G Y GSD V+S G ++ T E+D Q
Sbjct: 197 IPEENVLEKHIEGIQRYCGSDATVDSLASQYVHKLGMIIKRSTHELDLDDQ 247
>At1g60560.1 68414.m06817 SWIM zinc finger family protein contains
Pfam domain PF04434: SWIM zinc finger
Length = 703
Score = 25.0 bits (52), Expect = 9.6
Identities = 14/51 (27%), Positives = 22/51 (43%), Gaps = 3/51 (5%)
Query: 15 VPDEELSRR---GYSMYVGSDGDVESARPSERQTGGQFVEELTREIDQRQQ 62
+P+E + + G Y GSD V+S G ++ T E+D Q
Sbjct: 197 IPEENVLEKHIEGIQRYCGSDATVDSLASQYVHKLGMIIKRSTHELDLDDQ 247
>At1g24706.1 68414.m03104 expressed protein
Length = 1781
Score = 25.0 bits (52), Expect = 9.6
Identities = 13/50 (26%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Query: 32 DGDVESARPSERQTGGQFVEELTREIDQRQQRQSTAPPFLLQSIEENKKK 81
D D+ + +R+T EE RE ++ ++R+ + P L + E +K++
Sbjct: 1639 DDDIRDRKRDDRETITVKGEEREREREREREREKSLP--LKEDFEASKRR 1686
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.309 0.128 0.363
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,786,030
Number of Sequences: 28952
Number of extensions: 105856
Number of successful extensions: 271
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 248
Number of HSP's gapped (non-prelim): 38
length of query: 103
length of database: 12,070,560
effective HSP length: 70
effective length of query: 33
effective length of database: 10,043,920
effective search space: 331449360
effective search space used: 331449360
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)
S2: 52 (25.0 bits)
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