Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000834-TA|BGIBMGA000834-PA|IPR007087|Zinc finger,
C2H2-type, IPR012934|Zinc finger, AD-type
(351 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g50470.1 68416.m05520 hypersensitive response protein 3 (HR3)... 36 0.031
At1g72050.2 68414.m08328 zinc finger (C2H2 type) family protein ... 36 0.054
At4g15420.1 68417.m02359 PRLI-interacting factor K nearly identi... 34 0.12
At5g37190.1 68418.m04465 COP1-interacting protein 4 (CIP4) simil... 34 0.16
At4g13370.1 68417.m02090 expressed protein 33 0.29
At4g00930.1 68417.m00126 COP1-interacting protein 4.1 (CIP4.1) i... 33 0.38
At2g48100.2 68415.m06021 exonuclease family protein contains Pfa... 32 0.66
At2g48100.1 68415.m06020 exonuclease family protein contains Pfa... 32 0.66
At5g22355.1 68418.m02608 DC1 domain-containing protein contains ... 31 0.87
At2g23740.1 68415.m02834 zinc finger (C2H2 type) family protein ... 31 0.87
At5g54050.1 68418.m06722 DC1 domain-containing protein 31 1.2
At5g04240.1 68418.m00414 zinc finger (C2H2 type) family protein ... 31 1.2
At4g04940.1 68417.m00718 transducin family protein / WD-40 repea... 31 1.2
At5g58320.2 68418.m07301 kinase interacting protein-related low ... 30 2.7
At5g56080.1 68418.m06997 nicotianamine synthase, putative simila... 30 2.7
At2g34890.1 68415.m04283 CTP synthase, putative / UTP--ammonia l... 30 2.7
At1g25250.1 68414.m03133 zinc finger (C2H2 type) family protein ... 30 2.7
At1g14740.1 68414.m01762 expressed protein 30 2.7
At4g02190.1 68417.m00291 DC1 domain-containing protein contains ... 29 3.5
At3g16785.1 68416.m02143 phospholipase D zeta1 / PLDzeta1 (PLDP1... 29 3.5
At2g35550.2 68415.m04355 expressed protein 29 3.5
At2g35550.1 68415.m04354 expressed protein 29 3.5
At1g26830.1 68414.m03270 cullin, putative similar to Cullin homo... 29 4.6
At3g50700.1 68416.m05547 zinc finger (C2H2 type) family protein ... 29 6.1
At1g72050.1 68414.m08329 zinc finger (C2H2 type) family protein ... 29 6.1
At1g68130.1 68414.m07782 zinc finger (C2H2 type) family protein ... 29 6.1
At3g15354.1 68416.m01939 WD-40 repeat family protein / phytochro... 28 8.1
At3g13810.1 68416.m01744 zinc finger (C2H2 type) family protein ... 28 8.1
At3g13430.1 68416.m01688 zinc finger (C3HC4-type RING finger) fa... 28 8.1
At2g34730.1 68415.m04265 myosin heavy chain-related low similari... 28 8.1
At2g18490.1 68415.m02155 zinc finger (C2H2 type) family protein ... 28 8.1
At2g01940.1 68415.m00129 zinc finger (C2H2 type) family protein ... 28 8.1
>At3g50470.1 68416.m05520 hypersensitive response protein 3 (HR3)
identical to HR3 [Arabidopsis thaliana GI:12958164;
contains Pfam profile PF05659: Arabidopsis
broad-spectrum mildew resistance protein RPW8
Length = 213
Score = 36.3 bits (80), Expect = 0.031
Identities = 37/178 (20%), Positives = 73/178 (41%), Gaps = 9/178 (5%)
Query: 79 LQGKCKKTTETKLTVQPLPDS-EYNSDSLLEFLNNTENIEEYLNNLGKEDIPSIVNMLDR 137
L KK + LT + + D + + + + + E + + ++ I + ++L++
Sbjct: 19 LHDAIKKAKDRSLTTRCILDRLDATIFRITPLVTQVDKLSEEVEDSPRKVIEDLKHLLEK 78
Query: 138 NEHTNDSVKNMNRTIKQCSPKKKEKTKNLQMEID-VLDSDVEI-----VKEIILKESXXX 191
++ + R + K + K L+ + ++D DV++ +KE++ K S
Sbjct: 79 AVSLVEAYAELRRRNLLKKFRYKRRIKELEASLRWMVDVDVQVNQWVDIKELMAKMSEMN 138
Query: 192 XXXXXXXXXPLVCFACKLKFDTIQKLSQHI-STCDRSQRNCVQCNILFDSKTKLQQHL 248
P C K T Q SQ+I DRS V+C+ SK K+ H+
Sbjct: 139 TKLDEITRQPTDCICFKSNHSTSQSSSQNIVEETDRSLEEIVECS-SDGSKPKIDIHI 195
>At1g72050.2 68414.m08328 zinc finger (C2H2 type) family protein
contains multiple zinc finger domains: PF00096: Zinc
finger, C2H2 type
Length = 412
Score = 35.5 bits (78), Expect = 0.054
Identities = 24/91 (26%), Positives = 39/91 (42%), Gaps = 12/91 (13%)
Query: 227 SQRNCVQCNILFDSKTKLQQHLLTHNQPFPVTC---ECGDTFNNKEMLMRHRQTCYADQL 283
S C +C F L+QH+ +H+ TC +C ++ K+ L RH L
Sbjct: 64 SNHTCQECGAEFKKPAHLKQHMQSHSLERSFTCYVDDCAASYRRKDHLNRH-------LL 116
Query: 284 QSMGWGYKC--KECGDVFKDRFQLYRHAKEH 312
G +KC + C F + + RH K++
Sbjct: 117 THKGKLFKCPKENCKSEFSVQGNVGRHVKKY 147
Score = 32.3 bits (70), Expect = 0.50
Identities = 20/66 (30%), Positives = 30/66 (45%), Gaps = 3/66 (4%)
Query: 273 RHRQTCYADQLQSMGWGYKCKECGDVFKDRFQLYRHAKEHVL-KSDQRVCDICGHTFIGS 331
R + C D+ S + C+ECG FK L +H + H L +S D C ++
Sbjct: 51 RDDEACEVDEESSSN--HTCQECGAEFKKPAHLKQHMQSHSLERSFTCYVDDCAASYRRK 108
Query: 332 DALLKH 337
D L +H
Sbjct: 109 DHLNRH 114
Score = 28.7 bits (61), Expect = 6.1
Identities = 20/57 (35%), Positives = 24/57 (42%), Gaps = 5/57 (8%)
Query: 292 CKE--CGDVFKDRFQLYRHAKEHV-LKSDQRVCDI--CGHTFIGSDALLKHRNEDHK 343
CKE CG FK QL +H HV L S + C C F + L H H+
Sbjct: 217 CKEIGCGKAFKYPSQLQKHQDSHVKLDSVEAFCSEPGCMKYFTNEECLKSHIRSCHQ 273
>At4g15420.1 68417.m02359 PRLI-interacting factor K nearly identical
to PRLI-interacting factor K [Arabidopsis thaliana]
GI:11139266; contains Pfam profiles PF03152: Ubiquitin
fusion degradation protein UFD1, PF00096: Zinc finger,
C2H2 type
Length = 561
Score = 34.3 bits (75), Expect = 0.12
Identities = 25/109 (22%), Positives = 44/109 (40%), Gaps = 6/109 (5%)
Query: 226 RSQRNCVQCNILFDSKTKLQQHLLTHNQPFPVTCECGDTFNNKEMLMRHRQTCYADQLQS 285
++ +C +C T++++HL ++P +TC CG ++M+ + C +
Sbjct: 444 KNHLHCEKCGKALQP-TEMEKHLKVFHEP--LTCGCGIVLEKEQMVQHQGKDCPLRLIAC 500
Query: 286 MGWGYKCKECGDVFKDRFQLYRHAKEHVLKSDQRV--CDICGHTFIGSD 332
G E G+ D R EH R CD CG + + D
Sbjct: 501 RFCG-DMVEAGNSAADTRDRMRGMSEHESTCGSRTAPCDSCGRSVMLKD 548
>At5g37190.1 68418.m04465 COP1-interacting protein 4 (CIP4) similar
to COP1-interacting protein 4 (CIP4) [Arabidopsis
thaliana] GI:13160646; supporting cDNA
gi|13160645|dbj|AB036832.1|;
Length = 876
Score = 33.9 bits (74), Expect = 0.16
Identities = 26/97 (26%), Positives = 51/97 (52%), Gaps = 5/97 (5%)
Query: 80 QGKCKKTTETKLTVQPLPDSEYNSDSLLEFLNNTENIEEYLNNLGKEDIPSIVNMLDRNE 139
Q K K+T+ K + + ++ D+L++F +N+E G+ + I N+LD +
Sbjct: 450 QAKSVKSTKKKSSRKAKTPAK--EDTLVDF--GAQNVEPIKVVDGEGHVNDIRNVLDSLQ 505
Query: 140 HTNDSVKNMNRTIKQCSPKKKEK-TKNLQMEIDVLDS 175
+ +NM ++ K+ S + K+K + N+ E V+DS
Sbjct: 506 QRTEVEENMEKSGKKSSKRSKKKDSLNIVEEAQVVDS 542
>At4g13370.1 68417.m02090 expressed protein
Length = 673
Score = 33.1 bits (72), Expect = 0.29
Identities = 15/55 (27%), Positives = 33/55 (60%), Gaps = 1/55 (1%)
Query: 93 VQPLPDSEYNSDSLLEFLNNTENIEEYLNNLGKEDIPSIVNMLDRNEHTNDSVKN 147
+QP+ DSEY+ D + +LNN I++ ++ K ++ + +++NE + ++N
Sbjct: 132 IQPVSDSEYSLDPIAVYLNN-RRIDDDGDSDVKPNVRQALAPVNQNEENRNQIRN 185
>At4g00930.1 68417.m00126 COP1-interacting protein 4.1 (CIP4.1)
identical to cDNA CIP4.1 mRNA for COP1-interacting
protein 4.1, GI:13160649
Length = 976
Score = 32.7 bits (71), Expect = 0.38
Identities = 26/99 (26%), Positives = 57/99 (57%), Gaps = 9/99 (9%)
Query: 80 QGKCKKTTETKLTVQPLPDSEYNSDSLLEFLNNTENIE--EYLNNLGKEDIPSIVNMLDR 137
Q K K+T+ K + + ++ D+L++ + +N+E + ++ G +++ I N+LD
Sbjct: 600 QAKSVKSTKKKSSRKAKTPAK--EDTLVD--SGAQNVEPIKVVDGEGHDNV--IRNVLDS 653
Query: 138 NEHTNDSVKNMNRTIKQCSPKKKEK-TKNLQMEIDVLDS 175
+ N++ +NM ++ K+ S + K+K + N+ E V+DS
Sbjct: 654 LQQRNEAEENMEKSGKKSSKRSKKKDSLNIVEEAQVVDS 692
>At2g48100.2 68415.m06021 exonuclease family protein contains Pfam
domain PF00929: exonuclease
Length = 344
Score = 31.9 bits (69), Expect = 0.66
Identities = 25/91 (27%), Positives = 38/91 (41%), Gaps = 9/91 (9%)
Query: 261 CGDTFNNKEMLMRHRQTCYADQLQSMGWGYKCKECGDVFKDRFQLYRHAKEHVLKSD--- 317
C FN +E L+ H + Y L G K C R L + +H+ K +
Sbjct: 22 CYKMFNRREHLVEHMKISY-HSLHQPRCGVCLKHCKSFESVREHL--NVPDHLSKGNCKA 78
Query: 318 ---QRVCDICGHTFIGSDALLKHRNEDHKKP 345
+R C +C F + AL +H+N+ H P
Sbjct: 79 IFTKRGCTLCLQIFEEAFALAEHKNKCHLSP 109
>At2g48100.1 68415.m06020 exonuclease family protein contains Pfam
domain PF00929: exonuclease
Length = 344
Score = 31.9 bits (69), Expect = 0.66
Identities = 25/91 (27%), Positives = 38/91 (41%), Gaps = 9/91 (9%)
Query: 261 CGDTFNNKEMLMRHRQTCYADQLQSMGWGYKCKECGDVFKDRFQLYRHAKEHVLKSD--- 317
C FN +E L+ H + Y L G K C R L + +H+ K +
Sbjct: 22 CYKMFNRREHLVEHMKISY-HSLHQPRCGVCLKHCKSFESVREHL--NVPDHLSKGNCKA 78
Query: 318 ---QRVCDICGHTFIGSDALLKHRNEDHKKP 345
+R C +C F + AL +H+N+ H P
Sbjct: 79 IFTKRGCTLCLQIFEEAFALAEHKNKCHLSP 109
>At5g22355.1 68418.m02608 DC1 domain-containing protein contains
Pfam PF03107: DC1 domain; similar to ULI3 [Arabidopsis
thaliana] GI:17225050
Length = 664
Score = 31.5 bits (68), Expect = 0.87
Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 5/65 (7%)
Query: 230 NCVQCNILFDSKT----KLQQHLLTHNQPFPVTCECGDTFNNKEMLMRHRQTCYADQLQS 285
NC +C + K K ++H+ H +PF + TF++K+ CYA + +S
Sbjct: 412 NCEECRFILHEKCANHPKKKRHVF-HTKPFTLWSRPPRTFHSKDFRFYDVFRCYACRTKS 470
Query: 286 MGWGY 290
G+ Y
Sbjct: 471 TGFRY 475
>At2g23740.1 68415.m02834 zinc finger (C2H2 type) family protein
contains Pfam profile: PF00096 zinc finger, C2H2 type
Length = 907
Score = 31.5 bits (68), Expect = 0.87
Identities = 22/94 (23%), Positives = 37/94 (39%), Gaps = 6/94 (6%)
Query: 261 CGDTFNNKEMLMRHRQTCYADQLQSMGWGYKCKECGDVFKDRFQ------LYRHAKEHVL 314
CG F +KE L+ H Q + + +S+ +C F + + + E+
Sbjct: 535 CGSHFGDKEQLLVHVQAVHPSECKSLTVASECNLTNGEFSQKPEAGSSQIVVSQNNENTS 594
Query: 315 KSDQRVCDICGHTFIGSDALLKHRNEDHKKPANV 348
+ VC CG F L +H +H P+ V
Sbjct: 595 GVHKFVCKFCGLKFNLLPDLGRHHQAEHMGPSLV 628
>At5g54050.1 68418.m06722 DC1 domain-containing protein
Length = 580
Score = 31.1 bits (67), Expect = 1.2
Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 4/54 (7%)
Query: 4 NIDKCCRICLDMNSNHVCI---LNDPTIILHLKSCLTITISPGDHLPKDICVSC 54
NI+ C+ C D+ + C+ N P I H+ TISP D + D+C C
Sbjct: 73 NINYHCKEC-DIMMHKDCVDRLFNQPFICNHILKIFVSTISPLDSIVDDLCHFC 125
>At5g04240.1 68418.m00414 zinc finger (C2H2 type) family protein /
transcription factor jumonji (jmj) family protein
contains Pfam domians PF02375: jmjN domain, PF02373: jmjC
domain and PF00096: Zinc finger, C2H2 type
Length = 1327
Score = 31.1 bits (67), Expect = 1.2
Identities = 31/125 (24%), Positives = 51/125 (40%), Gaps = 12/125 (9%)
Query: 219 QHISTCDRSQRNCVQ-CNILFDSKTKLQQHLLTHNQPFPVTCECGDTFNNKEMLMRHRQT 277
Q + T R ++ C + F+SK KLQ TH + CG F + L+ H++
Sbjct: 1206 QEVPTTTHPNRCYLEGCKMTFESKAKLQ----THKRNRCTHEGCGKKFRAHKYLVLHQRV 1261
Query: 278 CYADQLQSMGWGYKCKECGDVFKDRFQLYRHAKEHVLKSDQRVC--DICGHTFIGSDALL 335
++ W K C FK ++ H + H + +C D CG +F
Sbjct: 1262 HKDERPFECSW----KGCSMTFKWQWARTEHLRLHTGERPY-ICKVDGCGLSFRFVSDYS 1316
Query: 336 KHRNE 340
+HR +
Sbjct: 1317 RHRRK 1321
>At4g04940.1 68417.m00718 transducin family protein / WD-40 repeat
family protein contains seven G-protein beta WD-40
repeats
Length = 910
Score = 31.1 bits (67), Expect = 1.2
Identities = 27/101 (26%), Positives = 48/101 (47%), Gaps = 9/101 (8%)
Query: 84 KKTTETKL-TVQPLPDSEYNSDSLLEFLNNTENIEEYLNNLGKEDIPSIV--NMLDRNEH 140
K KL +V L SE + D + L N+E ++ ++ ++ IP +V ++L +++
Sbjct: 645 KDVVNVKLPSVSALTSSEADDDMDRQVLENSEALQASSFSISQKQIPELVTLSLLPKSQW 704
Query: 141 TN----DSVKNMNRTIKQCSPKKKEKTKNLQMEIDVLDSDV 177
+ D +K N+ I+ PKK EK I L D+
Sbjct: 705 QSLINLDIIKARNKPIE--PPKKPEKAPFFLPSIPSLSGDI 743
>At5g58320.2 68418.m07301 kinase interacting protein-related low
similarity to kinase interacting protein 1 [Petunia
integrifolia] GI:13936326
Length = 558
Score = 29.9 bits (64), Expect = 2.7
Identities = 24/113 (21%), Positives = 46/113 (40%), Gaps = 5/113 (4%)
Query: 60 QFYNLQLNARCSQDWLESCLQGKCKKTTETKLTVQPLPDSEYNSDSLLEFLNN-TENIEE 118
QF L+ N R +D K ++ + K ++ L + +E L+ +E
Sbjct: 423 QFKELEANVRYLEDERRKVNNEKIEEEEKLKSEIEVLTLEKVEKGRCIETLSRKVSELES 482
Query: 119 YLNNLGKEDIPSIVNMLDRNEHTNDSVKNMNRTIKQCSPKKKEKTKNLQMEID 171
++ LG E I DR V+ R +++ + +K+E + L +D
Sbjct: 483 EISRLGSE----IKARDDRTMEMEKEVEKQRRELEEVAEEKREVIRQLCFSLD 531
>At5g56080.1 68418.m06997 nicotianamine synthase, putative similar
to nicotianamine synthase [Lycopersicon
esculentum][GI:4753801], nicotianamine synthase 2
[Hordeum vulgare][GI:4894912]
Length = 320
Score = 29.9 bits (64), Expect = 2.7
Identities = 22/69 (31%), Positives = 35/69 (50%), Gaps = 3/69 (4%)
Query: 88 ETKLTVQPLPDSEYNSDSLLEFLNNTENIEEYLNNLGKEDIPSIVNMLDRNEHTNDSVKN 147
E L V+ + D YN S LE L ++N++ L +P+ N +D E ++ VK+
Sbjct: 4 ENNLVVKQIMDL-YNQISNLESLKPSKNVDTLFRQLVSTCLPTDTN-IDVTEIHDEKVKD 61
Query: 148 M-NRTIKQC 155
M + IK C
Sbjct: 62 MRSHLIKLC 70
>At2g34890.1 68415.m04283 CTP synthase, putative / UTP--ammonia
ligase, putative similar to SP|P17812 CTP synthase (EC
6.3.4.2) (UTP--ammonia ligase) {Homo sapiens}; contains
Pfam profile PF00117: glutamine amidotransferase class-I
Length = 597
Score = 29.9 bits (64), Expect = 2.7
Identities = 12/38 (31%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
Query: 257 VTCECG--DTFNNKEMLMRHRQTCYADQLQSMGWGYKC 292
+ CG D N + +H QT + ++ Q +GW KC
Sbjct: 543 IAASCGELDAVLNPVSIHQHNQTMFLEKKQHIGWSKKC 580
>At1g25250.1 68414.m03133 zinc finger (C2H2 type) family protein
contains zinc finger, C2H2 type, domain, PROSITE:PS00028
Length = 362
Score = 29.9 bits (64), Expect = 2.7
Identities = 15/54 (27%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Query: 231 CVQCNILFDSKTKLQQHLLTHNQPFPVTCECGDTFNNKEMLMRHRQTCYADQLQ 284
C +C+ + ++ + HL T +C+CG F+ E + H+ TC Q Q
Sbjct: 120 CERCSKGYAVQSDYKAHLKTCGSRGH-SCDCGRVFSRVESFIEHQDTCTIRQPQ 172
Score = 28.7 bits (61), Expect = 6.1
Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Query: 313 VLKSDQRVCDICGHTFIGSDALLKHRNEDHKKP 345
+L+SD+ VC+IC F L HR HK P
Sbjct: 33 LLESDRYVCEICNQGFQRDQNLQMHRRR-HKVP 64
>At1g14740.1 68414.m01762 expressed protein
Length = 733
Score = 29.9 bits (64), Expect = 2.7
Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
Query: 111 NNTENIEEYLNNLGKEDIPSIVNMLD-RNEHTNDSVKNMNRTIKQCSPKKKEKTKNLQME 169
N+ E L ++ + I S+ ++ + T +S K R + SP+KKEK NLQ +
Sbjct: 296 NDAVRSERVLYDIVSKSISSVALIIQGMADETLESAKEYLRNLID-SPEKKEKLVNLQNQ 354
Query: 170 ID 171
ID
Sbjct: 355 ID 356
>At4g02190.1 68417.m00291 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 659
Score = 29.5 bits (63), Expect = 3.5
Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
Query: 254 PFPVTCECGDTFNNKEMLMRHRQTCYAD-QLQSMGWG--YKCKECGDVFKDRFQLYRHAK 310
P P E +T +K L++ + + D + + +G+G YKC ECG F L+
Sbjct: 107 PPPEVIESSETPCHKRTLLKEKIEFHCDAKCEEIGYGFPYKCLECGLTFHIDCVLHPSGV 166
Query: 311 EHV 313
+H+
Sbjct: 167 KHL 169
>At3g16785.1 68416.m02143 phospholipase D zeta1 / PLDzeta1 (PLDP1)
identical to phospholipase D zeta1 [Arabidopsis
thaliana] GI:15723315, SP|Q9LRZ5 Phospholipase D p1 (EC
3.1.4.4) (AtPLDp1) (Phospholipase D1 PHOX and PX
containing domain) (Phospholipase D zeta 1) (PLDzeta1)
{Arabidopsis thaliana}; supported by cDNA gi:15723314;
non-consensus splice site (GC) at the beginning of first
intron.
Length = 1096
Score = 29.5 bits (63), Expect = 3.5
Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 3/43 (6%)
Query: 108 EFLNNTENIEEYLNNLGKEDIPSIVNMLDRNE---HTNDSVKN 147
E E ++E+L NLG D P +V D +E H ++S KN
Sbjct: 107 EIHEKQEQVKEWLQNLGIGDHPPVVQDEDADEVPLHQDESAKN 149
>At2g35550.2 68415.m04355 expressed protein
Length = 226
Score = 29.5 bits (63), Expect = 3.5
Identities = 29/109 (26%), Positives = 47/109 (43%), Gaps = 14/109 (12%)
Query: 74 WLESCLQGKCKKTTETKLTVQP------LPDSEYNSDSLLEFLNNTENIEEYLNNLGKED 127
WL SC+ KTT L+ +P +P S + + N+TE +++ N
Sbjct: 29 WLHSCIA--VPKTTGIDLSQEPPAEGVMVPQSHLFPPPIRDSRNDTETVKQKSVNQS--- 83
Query: 128 IPSIVNMLDRNEHTNDSVKNMNRTIKQCSPKKKEKTKNLQMEIDVLDSD 176
PS + + + SV N ++ K+EK KNL + ID+ D
Sbjct: 84 -PSKA-LKPKPQRKKRSVSNKSKKTPSIPETKREK-KNLDINIDISSFD 129
>At2g35550.1 68415.m04354 expressed protein
Length = 271
Score = 29.5 bits (63), Expect = 3.5
Identities = 29/109 (26%), Positives = 47/109 (43%), Gaps = 14/109 (12%)
Query: 74 WLESCLQGKCKKTTETKLTVQP------LPDSEYNSDSLLEFLNNTENIEEYLNNLGKED 127
WL SC+ KTT L+ +P +P S + + N+TE +++ N
Sbjct: 74 WLHSCIA--VPKTTGIDLSQEPPAEGVMVPQSHLFPPPIRDSRNDTETVKQKSVNQS--- 128
Query: 128 IPSIVNMLDRNEHTNDSVKNMNRTIKQCSPKKKEKTKNLQMEIDVLDSD 176
PS + + + SV N ++ K+EK KNL + ID+ D
Sbjct: 129 -PSKA-LKPKPQRKKRSVSNKSKKTPSIPETKREK-KNLDINIDISSFD 174
>At1g26830.1 68414.m03270 cullin, putative similar to Cullin homolog
3 (CUL-3) SP:Q13618, GI:3639052 from [Homo sapiens];
contains Pfam profile PF00888: Cullin family
Length = 732
Score = 29.1 bits (62), Expect = 4.6
Identities = 23/84 (27%), Positives = 41/84 (48%), Gaps = 8/84 (9%)
Query: 55 VDQLSQFYNLQLNARCSQDWLESCLQGKCKKTTETKLTVQPLPDSEY---NSDSLLEFLN 111
+D S+FY ++ SQ+++ESC G K +E +LT + + Y S+ + +
Sbjct: 201 LDASSEFYKVE-----SQEFIESCDCGDYLKKSEKRLTEEIERVAHYLDAKSEEKITSVV 255
Query: 112 NTENIEEYLNNLGKEDIPSIVNML 135
E I ++ L + +VNML
Sbjct: 256 EKEMIANHMQRLVHMENSGLVNML 279
>At3g50700.1 68416.m05547 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 452
Score = 28.7 bits (61), Expect = 6.1
Identities = 26/120 (21%), Positives = 48/120 (40%), Gaps = 12/120 (10%)
Query: 231 CVQCNILFDSKTKLQQHLLTHNQPFPVTCECGDTFNNKEMLMRHRQTCYADQLQSMG--W 288
C CN F LQ H HN P+ + + K + + D +++G
Sbjct: 65 CEICNKGFQRDQNLQLHRRGHNLPWKLRQKSNKEVKKKVYVCPEVSCVHHDPSRALGDLT 124
Query: 289 GYKCKECGDVFKDRFQLYRHAKEHVLKSD----QRVCDI------CGHTFIGSDALLKHR 338
G K C + +++ + +K++ ++SD ++C CG F D+ + HR
Sbjct: 125 GIKKHFCRKHGEKKWKCDKCSKKYAVQSDWKAHSKICGTKEYKCDCGTLFSRRDSFITHR 184
>At1g72050.1 68414.m08329 zinc finger (C2H2 type) family protein
contains multiple zinc finger domains: PF00096: Zinc
finger, C2H2 type
Length = 324
Score = 28.7 bits (61), Expect = 6.1
Identities = 20/57 (35%), Positives = 24/57 (42%), Gaps = 5/57 (8%)
Query: 292 CKE--CGDVFKDRFQLYRHAKEHV-LKSDQRVCDI--CGHTFIGSDALLKHRNEDHK 343
CKE CG FK QL +H HV L S + C C F + L H H+
Sbjct: 129 CKEIGCGKAFKYPSQLQKHQDSHVKLDSVEAFCSEPGCMKYFTNEECLKSHIRSCHQ 185
>At1g68130.1 68414.m07782 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 419
Score = 28.7 bits (61), Expect = 6.1
Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Query: 313 VLKSDQRVCDICGHTFIGSDALLKHRNEDHKKP 345
+L+SD+ VC+IC F L HR HK P
Sbjct: 64 LLESDRYVCEICNQGFQRDQNLQMHRRR-HKVP 95
Score = 28.7 bits (61), Expect = 6.1
Identities = 13/48 (27%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Query: 231 CVQCNILFDSKTKLQQHLLTHNQPFPVTCECGDTFNNKEMLMRHRQTC 278
C +C+ + ++ + HL T +C+CG F+ E + H+ TC
Sbjct: 150 CERCSKGYAVQSDYKAHLKTCGTRGH-SCDCGRVFSRVESFIEHQDTC 196
>At3g15354.1 68416.m01939 WD-40 repeat family protein / phytochrome
A-related contains 7 WD-40 repeats (PF00400);
phytochrome A supressor spa1 (GI:4809171) [Arabidopsis
thaliana]
Length = 837
Score = 28.3 bits (60), Expect = 8.1
Identities = 31/109 (28%), Positives = 53/109 (48%), Gaps = 13/109 (11%)
Query: 82 KCKKTTETKL-TVQPLPDSEYNSDSLLEFLNNTENIEEYLNNLGKEDIPSIVNMLDRNEH 140
KC K L + P P + LL+ +E I E +NL E+ + + + DR E
Sbjct: 266 KCPKEASFCLWLLHPEPTCRPSMSDLLQ----SEFITEPRDNL--EEREAAIELRDRIEE 319
Query: 141 TNDSVKNMNRTIKQCSPKKKEKTKNLQMEIDVLDSDVE--IVKEIILKE 187
+S+ I+Q +K+E LQ + +L SD+E + +++ILK+
Sbjct: 320 -QESLLEFLLLIQQ---RKQESAYRLQDTVSLLSSDIEQVVKRQLILKK 364
>At3g13810.1 68416.m01744 zinc finger (C2H2 type) family protein
similar to finger protein pcp1 GB:S48856 from [Solanum
tuberosum] contains Pfam domain, PF00096: Zinc finger,
C2H2 type
Length = 513
Score = 28.3 bits (60), Expect = 8.1
Identities = 28/122 (22%), Positives = 51/122 (41%), Gaps = 15/122 (12%)
Query: 231 CVQCNILFDSKTKLQQHLLTHNQPFPVTCECGDTFNNKEMLMRHRQTC-YADQLQSMG-- 287
C CN F LQ H HN P+ + K++ + +C + D +++G
Sbjct: 101 CEICNKGFQRDQNLQLHRRGHNLPWKLKQRSNKEVIRKKVYVCPEASCVHHDPSRALGDL 160
Query: 288 WGYKCKECGDVFKDRFQLYRHAKEHVLKSDQRV-----------CDICGHTFIGSDALLK 336
G K C + +++ + +K++ ++SD + CD CG F D+ +
Sbjct: 161 TGIKKHFCRKHGEKKWKCDKCSKKYAVQSDCKAHSKTCGTKEYRCD-CGTLFSRRDSFIT 219
Query: 337 HR 338
HR
Sbjct: 220 HR 221
>At3g13430.1 68416.m01688 zinc finger (C3HC4-type RING finger)
family protein contains Pfam domain, PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 315
Score = 28.3 bits (60), Expect = 8.1
Identities = 22/95 (23%), Positives = 41/95 (43%), Gaps = 4/95 (4%)
Query: 76 ESCLQ-GKCKKTTETKLTVQPLP-DSEYNSDSLLEFL--NNTENIEEYLNNLGKEDIPSI 131
+S LQ C E + + +P +++SD LL +L +++ + YL G +D P
Sbjct: 220 DSLLQCSVCLDDFEIGMEAKEMPCKHKFHSDCLLPWLELHSSCPVCRYLLPTGDDDEPKT 279
Query: 132 VNMLDRNEHTNDSVKNMNRTIKQCSPKKKEKTKNL 166
RN+ N+ + N + SP ++
Sbjct: 280 DAETSRNDDNNEDISNASMASNGSSPDSSSNNSSV 314
>At2g34730.1 68415.m04265 myosin heavy chain-related low similarity
to SP|P14105 Myosin heavy chain, nonmuscle (Cellular
myosin heavy chain) {Gallus gallus}
Length = 825
Score = 28.3 bits (60), Expect = 8.1
Identities = 16/59 (27%), Positives = 29/59 (49%)
Query: 128 IPSIVNMLDRNEHTNDSVKNMNRTIKQCSPKKKEKTKNLQMEIDVLDSDVEIVKEIILK 186
+ ++ + L H + VK T KQ KK K + E+D+L +VE + +++ K
Sbjct: 729 LKNMQSQLSDLSHQINEVKGKASTYKQRLEKKCCDLKKAEAEVDLLGDEVETLLDLLEK 787
>At2g18490.1 68415.m02155 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 251
Score = 28.3 bits (60), Expect = 8.1
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 201 PLVCFACKLKFDTIQKLSQHISTCDRSQRN 230
P C C FDT QK + H+S+ +S+ N
Sbjct: 168 PYTCPKCNSIFDTSQKFAAHMSSHYKSETN 197
>At2g01940.1 68415.m00129 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 439
Score = 28.3 bits (60), Expect = 8.1
Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Query: 313 VLKSDQRVCDICGHTFIGSDALLKHRNEDHKKP 345
+L+SD+ +C+IC F L HR HK P
Sbjct: 61 LLESDRYICEICNQGFQRDQNLQMHRRR-HKVP 92
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.320 0.134 0.419
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,778,124
Number of Sequences: 28952
Number of extensions: 379082
Number of successful extensions: 1323
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 29
Number of HSP's that attempted gapping in prelim test: 1299
Number of HSP's gapped (non-prelim): 54
length of query: 351
length of database: 12,070,560
effective HSP length: 82
effective length of query: 269
effective length of database: 9,696,496
effective search space: 2608357424
effective search space used: 2608357424
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 60 (28.3 bits)
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