GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000834-TA|BGIBMGA000834-PA|IPR007087|Zinc finger,
C2H2-type, IPR012934|Zinc finger, AD-type
         (351 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein pr...    50   2e-08
AY490815-1|AAR82970.1|  136|Tribolium castaneum glass protein pr...    45   1e-06
AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein ...    43   4e-06
AY600513-1|AAT11861.1|  314|Tribolium castaneum spalt-like prote...    41   2e-05
AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    33   0.003
DQ414246-1|ABD63008.1|  126|Tribolium castaneum odd-skipped prot...    32   0.005
L01616-1|AAA30096.1|   74|Tribolium castaneum zinc finger protei...    31   0.013
X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       30   0.022
L01617-1|AAA30097.1|   46|Tribolium castaneum zinc finger protei...    23   2.5  
DQ855505-1|ABH88192.1|  119|Tribolium castaneum chemosensory pro...    22   5.8  
DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase rever...    22   7.7  

>AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein
           protein.
          Length = 392

 Score = 50.4 bits (115), Expect = 2e-08
 Identities = 35/139 (25%), Positives = 52/139 (37%), Gaps = 9/139 (6%)

Query: 201 PLVCFACKLKFDTIQKLSQHIST-CDRSQRNCVQCNILFDSKTKLQQHLLTHNQPFPVTC 259
           P VC  C   +     L  H+ T        C+ CN  F     L  H+ TH+   P  C
Sbjct: 249 PNVCRICGKSYARPSTLKTHLRTHSGEKPYRCIDCNKSFSQAANLTAHVRTHSGEKPFRC 308

Query: 260 E-CGDTFNNKEMLMRHRQTCYADQLQSMGWGYKCKECGDVFKDRFQLYRHAKEHVLKSDQ 318
             C   F+    +  H +T   ++       Y+C+ C   F D   L +H + H  +   
Sbjct: 309 PVCDRRFSQSSSVTTHMRTHSGER------PYRCRLCKKAFSDSSTLTKHLRIHSGEKPY 362

Query: 319 RVCDICGHTFIGSDALLKH 337
             C +C   F  S  L +H
Sbjct: 363 E-CKLCLLRFSQSGNLNRH 380



 Score = 43.6 bits (98), Expect = 2e-06
 Identities = 29/114 (25%), Positives = 44/114 (38%), Gaps = 8/114 (7%)

Query: 201 PLVCFACKLKFDTIQKLSQHISTCDRSQR-NCVQCNILFDSKTKLQQHLLTHNQPFPVTC 259
           P  C  C   F     L+ H+ T    +   C  C+  F   + +  H+ TH+   P  C
Sbjct: 277 PYRCIDCNKSFSQAANLTAHVRTHSGEKPFRCPVCDRRFSQSSSVTTHMRTHSGERPYRC 336

Query: 260 E-CGDTFNNKEMLMRHRQTCYADQLQSMGWGYKCKECGDVFKDRFQLYRHAKEH 312
             C   F++   L +H +      + S    Y+CK C   F     L RH + H
Sbjct: 337 RLCKKAFSDSSTLTKHLR------IHSGEKPYECKLCLLRFSQSGNLNRHMRVH 384


>AY490815-1|AAR82970.1|  136|Tribolium castaneum glass protein
           protein.
          Length = 136

 Score = 44.8 bits (101), Expect = 1e-06
 Identities = 31/123 (25%), Positives = 47/123 (38%), Gaps = 9/123 (7%)

Query: 217 LSQHIST-CDRSQRNCVQCNILFDSKTKLQQHLLTHNQPFPVTCE-CGDTFNNKEMLMRH 274
           L  H+ T        C+ CN  F     L  H+ TH+   P  C  C   F+    +  H
Sbjct: 9   LKTHLRTHSGEKPYRCIDCNKSFSQAANLTAHVRTHSGEKPFRCPVCDRRFSQSSSVTTH 68

Query: 275 RQTCYADQLQSMGWGYKCKECGDVFKDRFQLYRHAKEHVLKSDQRVCDICGHTFIGSDAL 334
            +T   ++       Y+C+ C   F D   L +H + H  +     C +C   F  S  L
Sbjct: 69  MRTHSGER------PYRCRLCKKAFSDSSTLTKHLRIHSGEKPYE-CKLCLLRFSQSGNL 121

Query: 335 LKH 337
            +H
Sbjct: 122 NRH 124



 Score = 43.6 bits (98), Expect = 2e-06
 Identities = 29/114 (25%), Positives = 44/114 (38%), Gaps = 8/114 (7%)

Query: 201 PLVCFACKLKFDTIQKLSQHISTCDRSQR-NCVQCNILFDSKTKLQQHLLTHNQPFPVTC 259
           P  C  C   F     L+ H+ T    +   C  C+  F   + +  H+ TH+   P  C
Sbjct: 21  PYRCIDCNKSFSQAANLTAHVRTHSGEKPFRCPVCDRRFSQSSSVTTHMRTHSGERPYRC 80

Query: 260 E-CGDTFNNKEMLMRHRQTCYADQLQSMGWGYKCKECGDVFKDRFQLYRHAKEH 312
             C   F++   L +H +      + S    Y+CK C   F     L RH + H
Sbjct: 81  RLCKKAFSDSSTLTKHLR------IHSGEKPYECKLCLLRFSQSGNLNRHMRVH 128


>AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein
           protein.
          Length = 370

 Score = 42.7 bits (96), Expect = 4e-06
 Identities = 36/140 (25%), Positives = 47/140 (33%), Gaps = 9/140 (6%)

Query: 201 PLVCFACKLKFDTIQKLSQHIST-CDRSQRNCVQCNILFDSKTKLQQHLLTHNQPFPVTC 259
           P  C  C   F     L  H  T        C +C+  F     L+ H+  H    P  C
Sbjct: 134 PFTCEVCNRSFGYKHVLQNHERTHTGEKPFECQECHKRFTRDHHLKTHMRLHTGERPYRC 193

Query: 260 E-CGDTFNNKEMLMRHRQTCYADQLQSMGWGYKCKECGDVFKDRFQLYRHAKEHVLKSDQ 318
           E C   F     L RH +    ++       Y C+ C   F D  QL  H   H  +   
Sbjct: 194 EHCDRQFVQVANLRRHLRVHTGER------PYGCEHCSMKFSDSNQLKAHVLIHTNEKPF 247

Query: 319 RVCDICGHTFIGSDALLKHR 338
             CD C   F     L+ H+
Sbjct: 248 E-CDKCRGRFRRRHHLVHHK 266


>AY600513-1|AAT11861.1|  314|Tribolium castaneum spalt-like protein
           protein.
          Length = 314

 Score = 40.7 bits (91), Expect = 2e-05
 Identities = 28/100 (28%), Positives = 40/100 (40%), Gaps = 3/100 (3%)

Query: 214 IQKLSQHISTCDRSQRNCVQCNILFDSKTKLQQHLLTHNQPFPVTCE-CGDTFNNKEMLM 272
           +Q+L  +I         CV C+ +   K+ LQ H  TH    P  C+ CG  F  K  L 
Sbjct: 120 LQQLVDNIEHKLSDPNQCVICHRVLSCKSALQMHYRTHTGERPFKCKICGRAFTTKGNLK 179

Query: 273 RHRQTCYADQLQSMGWGYKCKECGDVFKDRFQLYRHAKEH 312
            H     A     M   ++C  C   F +   L +H + H
Sbjct: 180 THMGVHRAK--PPMRVLHQCPVCHKKFTNALVLQQHIRLH 217



 Score = 33.5 bits (73), Expect = 0.002
 Identities = 29/102 (28%), Positives = 41/102 (40%), Gaps = 12/102 (11%)

Query: 242 TKLQQHL--LTHNQPFPVTCE-CGDTFNNKEMLMRHRQTCYADQLQSMGWGYKCKECGDV 298
           +KLQQ +  + H    P  C  C    + K  L  H +T   ++       +KCK CG  
Sbjct: 118 SKLQQLVDNIEHKLSDPNQCVICHRVLSCKSALQMHYRTHTGER------PFKCKICGRA 171

Query: 299 FKDRFQLYRHAKEHVLKSDQRV---CDICGHTFIGSDALLKH 337
           F  +  L  H   H  K   RV   C +C   F  +  L +H
Sbjct: 172 FTTKGNLKTHMGVHRAKPPMRVLHQCPVCHKKFTNALVLQQH 213



 Score = 25.4 bits (53), Expect = 0.62
 Identities = 15/55 (27%), Positives = 20/55 (36%), Gaps = 1/55 (1%)

Query: 291 KCKECGDVFKDRFQLYRHAKEHVLKSDQRVCDICGHTFIGSDALLKHRNEDHKKP 345
           +C  C  V   +  L  H + H  +   + C ICG  F     L  H      KP
Sbjct: 136 QCVICHRVLSCKSALQMHYRTHTGERPFK-CKICGRAFTTKGNLKTHMGVHRAKP 189


>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 33.1 bits (72), Expect = 0.003
 Identities = 30/116 (25%), Positives = 47/116 (40%), Gaps = 11/116 (9%)

Query: 222 STCDRSQRNCVQCNILFDSKTKLQQHLLTHNQPFPVTCECGDTFNNKEMLMRHRQTCYAD 281
           +TCD    NC +   L  +   L++  + H+   P    CG  +     L  H +    +
Sbjct: 289 ATCDCP--NCQEAERLGPAGVHLRKKNI-HSCHIP---GCGKVYGKTSHLKAHLRWHTGE 342

Query: 282 QLQSMGWGYKCKECGDVFKDRFQLYRHAKEHVLKSDQRVCDICGHTFIGSDALLKH 337
           +     W +    CG  F    +L RH + H  +  +  C IC   F+ SD L KH
Sbjct: 343 RPFVCNWLF----CGKRFTRSDELQRHLRTHTGEK-RFACPICNKRFMRSDHLAKH 393



 Score = 30.3 bits (65), Expect = 0.022
 Identities = 18/55 (32%), Positives = 25/55 (45%), Gaps = 3/55 (5%)

Query: 201 PLVC--FACKLKFDTIQKLSQHISTCDRSQR-NCVQCNILFDSKTKLQQHLLTHN 252
           P VC    C  +F    +L +H+ T    +R  C  CN  F     L +H+ THN
Sbjct: 344 PFVCNWLFCGKRFTRSDELQRHLRTHTGEKRFACPICNKRFMRSDHLAKHVKTHN 398


>DQ414246-1|ABD63008.1|  126|Tribolium castaneum odd-skipped
           protein.
          Length = 126

 Score = 32.3 bits (70), Expect = 0.005
 Identities = 18/48 (37%), Positives = 22/48 (45%), Gaps = 5/48 (10%)

Query: 292 CKECGDVFKDRFQLYRHAKEHVLKSDQRV--CDICGHTFIGSDALLKH 337
           CK C   F   + L  H + H   +D+R   CDICG  F   D L  H
Sbjct: 82  CKYCNRQFTKSYNLLIHERTH---TDERPYSCDICGKAFRRQDHLRDH 126



 Score = 31.1 bits (67), Expect = 0.013
 Identities = 15/45 (33%), Positives = 19/45 (42%), Gaps = 1/45 (2%)

Query: 231 CVQCNILFDSKTKLQQHLLTHNQPFPVTCE-CGDTFNNKEMLMRH 274
           C  CN  F     L  H  TH    P +C+ CG  F  ++ L  H
Sbjct: 82  CKYCNRQFTKSYNLLIHERTHTDERPYSCDICGKAFRRQDHLRDH 126


>L01616-1|AAA30096.1|   74|Tribolium castaneum zinc finger protein
           protein.
          Length = 74

 Score = 31.1 bits (67), Expect = 0.013
 Identities = 19/62 (30%), Positives = 25/62 (40%), Gaps = 3/62 (4%)

Query: 201 PLVCFACKLKFDTIQKLSQH--ISTCDRSQRNCVQCNILFDSKTKLQQHLLTHNQPFPVT 258
           P  C  C  +F     L  H  + T +R  R C  C+  F     L++HL  H    P  
Sbjct: 9   PFECQECHKRFTRDHHLKTHMRLHTGERPYR-CEHCDRQFVQVANLRRHLRVHTGERPYG 67

Query: 259 CE 260
           CE
Sbjct: 68  CE 69



 Score = 24.6 bits (51), Expect = 1.1
 Identities = 17/64 (26%), Positives = 23/64 (35%), Gaps = 7/64 (10%)

Query: 250 THNQPFPVTC-ECGDTFNNKEMLMRHRQTCYADQLQSMGWGYKCKECGDVFKDRFQLYRH 308
           TH    P  C EC   F     L  H +    ++       Y+C+ C   F     L RH
Sbjct: 3   THTGEKPFECQECHKRFTRDHHLKTHMRLHTGER------PYRCEHCDRQFVQVANLRRH 56

Query: 309 AKEH 312
            + H
Sbjct: 57  LRVH 60


>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 30.3 bits (65), Expect = 0.022
 Identities = 10/35 (28%), Positives = 19/35 (54%)

Query: 290 YKCKECGDVFKDRFQLYRHAKEHVLKSDQRVCDIC 324
           +KCK+C  V   + + + H+K H+ +  +  C  C
Sbjct: 202 FKCKQCDFVAITKLEQWNHSKVHIREDKRLTCPKC 236



 Score = 25.8 bits (54), Expect = 0.47
 Identities = 14/46 (30%), Positives = 18/46 (39%), Gaps = 1/46 (2%)

Query: 230 NCVQCNILFDSKTKLQQHLLTHNQPFPVTCE-CGDTFNNKEMLMRH 274
           +C  CNI F        H+  H    P TC  CG   ++K     H
Sbjct: 472 SCQYCNIAFGDAVLYTIHMGYHGFHNPFTCNMCGVECSDKVSFFLH 517


>L01617-1|AAA30097.1|   46|Tribolium castaneum zinc finger protein
           protein.
          Length = 46

 Score = 23.4 bits (48), Expect = 2.5
 Identities = 12/36 (33%), Positives = 14/36 (38%), Gaps = 1/36 (2%)

Query: 231 CVQCNILFDSKTKLQQHLLTHNQPFPVTCE-CGDTF 265
           C  C   F     LQ H+ TH    P +C  C   F
Sbjct: 10  CTICPKAFSRPWLLQGHIRTHTGEKPFSCTYCNRAF 45


>DQ855505-1|ABH88192.1|  119|Tribolium castaneum chemosensory
           protein 19 protein.
          Length = 119

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 9/29 (31%), Positives = 15/29 (51%)

Query: 225 DRSQRNCVQCNILFDSKTKLQQHLLTHNQ 253
           D  + +C +C+      TK   H L+HN+
Sbjct: 64  DALKSDCAKCSEKQKEMTKKVIHFLSHNK 92


>DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase reverse
           transcriptase protein.
          Length = 596

 Score = 21.8 bits (44), Expect = 7.7
 Identities = 10/25 (40%), Positives = 12/25 (48%)

Query: 242 TKLQQHLLTHNQPFPVTCECGDTFN 266
           TK + +L TH  P      CG  FN
Sbjct: 371 TKTRTNLPTHRHPQDEIPYCGKIFN 395


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.320    0.134    0.419 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 88,090
Number of Sequences: 317
Number of extensions: 4001
Number of successful extensions: 37
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 4
Number of HSP's gapped (non-prelim): 22
length of query: 351
length of database: 114,650
effective HSP length: 57
effective length of query: 294
effective length of database: 96,581
effective search space: 28394814
effective search space used: 28394814
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 44 (21.8 bits)