Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000834-TA|BGIBMGA000834-PA|IPR007087|Zinc finger,
C2H2-type, IPR012934|Zinc finger, AD-type
(351 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC144.09c |sfc2||RNA polymerase III transcription factor TFIII... 40 4e-04
SPAC6G10.12c |ace2||transcription factor Ace2|Schizosaccharomyce... 40 4e-04
SPAC1039.05c |||conserved fungal protein|Schizosaccharomyces pom... 34 0.026
SPAC6F12.02 |rst2||transcription factor Rst2|Schizosaccharomyces... 34 0.035
SPAC25B8.19c ||SPAC683.01c|transcription factor, zf-fungal binuc... 32 0.14
SPAC9E9.08 |rad26||ATRIP|Schizosaccharomyces pombe|chr 1|||Manual 31 0.19
SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces ... 31 0.25
SPAC1805.15c |pub2||ubiquitin-protein ligase Pub2|Schizosaccharo... 31 0.25
SPAC144.02 |||transcription factor |Schizosaccharomyces pombe|ch... 31 0.25
SPAC11D3.17 |||zinc finger protein|Schizosaccharomyces pombe|chr... 31 0.25
SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyce... 31 0.25
SPAC4H3.14c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 31 0.32
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 30 0.43
SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Ma... 30 0.43
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 30 0.43
SPAPB1E7.06c |eme1||Holliday junction resolvase subunit Eme1|Sch... 30 0.57
SPBC1861.06c |mug131||S. pombe specific UPF0300 family protein 4... 30 0.57
SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog 1|Schizosa... 29 0.75
SPBC215.06c |||human LYHRT homolog|Schizosaccharomyces pombe|chr... 29 1.3
SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|ch... 29 1.3
SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin homolog|Sc... 29 1.3
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces... 28 1.7
SPAC144.03 |ade2|min10, min3|adenylosuccinate synthetase Ade2|Sc... 28 2.3
SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit Psm3|Sch... 28 2.3
SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3 |Schizosacc... 27 3.0
SPAC1142.01 ||SPAC17G6.18|DUF654 family protein|Schizosaccharomy... 27 3.0
SPBC887.03c |noc3||Noc2p-Noc3p complex subunit Noc3 |Schizosacch... 27 3.0
SPBP4H10.06c |cut14|smc2, smc2|condensin subunit Cut14|Schizosac... 27 4.0
SPBC660.12c |||peptide epimerase |Schizosaccharomyces pombe|chr ... 27 4.0
SPCC576.01c ||SPCPB1C11.04c|sulfonate dioxygenase |Schizosacchar... 27 5.3
SPBC25B2.04c |||mitochondrial ribosome assembly protein|Schizosa... 27 5.3
SPBC18H10.06c |swd2|swd2.1|COMPASS complex subunit Swd2|Schizosa... 27 5.3
SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1 |Schizosaccharo... 27 5.3
SPBC2F12.11c |rep2||transcriptional activator Rep2|Schizosacchar... 27 5.3
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 27 5.3
SPBC2D10.06 |rep1|rec16|MBF transcription factor complex subunit... 26 7.0
SPAC57A7.13 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 26 7.0
SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo... 26 7.0
SPBC365.11 |||GRIP domain protein|Schizosaccharomyces pombe|chr ... 26 9.2
SPBC83.01 |ucp8||UBA/EH/EF hand domain protein Ucp8|Schizosaccha... 26 9.2
>SPAC144.09c |sfc2||RNA polymerase III transcription factor
TFIIIA|Schizosaccharomyces pombe|chr 1|||Manual
Length = 374
Score = 40.3 bits (90), Expect = 4e-04
Identities = 34/138 (24%), Positives = 56/138 (40%), Gaps = 13/138 (9%)
Query: 207 CKLKFDTIQKLSQHISTCDRSQRNCVQ---CNILFDSKTKLQQHLL---THNQPFPVTCE 260
C +F T Q L +HI + + C+ F +L+ H+ TH P+P T +
Sbjct: 90 CDAQFYTQQHLERHIEVHRKPKPYACTWEGCDECFSKHQQLRSHISACHTHLLPYPCTYQ 149
Query: 261 -CGDTFNNKEMLMRHRQTCYADQLQSMGWGYKCKECGDVFKDRFQLYRHAKEHVLKSDQR 319
C F K+ L H + + Y C V + F+ + + H+ ++
Sbjct: 150 DCELRFATKQKLQNHVNRAHEKIIS-----YSCPHESCVGHEGFEKWSQLQNHIREAHVP 204
Query: 320 VCDICGHTFIGSDALLKH 337
C ICG F + A L+H
Sbjct: 205 SCSICGRQF-KTAAHLRH 221
Score = 32.3 bits (70), Expect = 0.11
Identities = 25/86 (29%), Positives = 36/86 (41%), Gaps = 11/86 (12%)
Query: 204 CFACKLKFDTIQKLSQHI-----STCDRSQRNCVQ--CNILFDSKTKLQQHL-LTHNQPF 255
C C +F T L H+ + +R +C C F + L++H+ + H
Sbjct: 206 CSICGRQFKTAAHLRHHVVLHQTTLEERKTYHCPMEGCKKSFTRSSALKKHISVIHEGNM 265
Query: 256 PVTCE-CGDTFNNKEMLMRH--RQTC 278
C+ CG F K ML RH R TC
Sbjct: 266 AFHCDSCGTKFGYKHMLQRHLERGTC 291
Score = 31.9 bits (69), Expect = 0.14
Identities = 22/83 (26%), Positives = 36/83 (43%), Gaps = 7/83 (8%)
Query: 233 QCNILFDSKTKLQQHLLTHNQPFPVTCE---CGDTFNNKEMLMRHRQTCYADQLQSMGWG 289
+C + + L+QHL TH+ P C+ C F K L H++ C+ + ++
Sbjct: 29 ECGKKYSRPSLLEQHLRTHSNERPFVCDYTGCSKAFYRKSHLKIHKR-CHTN-VKPFSCH 86
Query: 290 YKCKECGDVFKDRFQLYRHAKEH 312
Y C F + L RH + H
Sbjct: 87 Y--DGCDAQFYTQQHLERHIEVH 107
Score = 29.9 bits (64), Expect = 0.57
Identities = 28/146 (19%), Positives = 54/146 (36%), Gaps = 15/146 (10%)
Query: 211 FDTIQKLSQHISTCDRSQRNCVQCNILFDSKTKLQQHLLTHN------QPFPVTCE-CGD 263
F+ +L HI + +C C F + L+ H++ H + + E C
Sbjct: 188 FEKWSQLQNHIR--EAHVPSCSICGRQFKTAAHLRHHVVLHQTTLEERKTYHCPMEGCKK 245
Query: 264 TFNNKEMLMRHRQTCYADQLQSMGWGYKCKECGDVFKDRFQLYRHAKEHVLKSDQR-VCD 322
+F L +H + + + C CG F + L RH + K + +
Sbjct: 246 SFTRSSALKKHISVIHEGNM-----AFHCDSCGTKFGYKHMLQRHLERGTCKKAHKPYIN 300
Query: 323 ICGHTFIGSDALLKHRNEDHKKPANV 348
CG G + + H ++ + +N+
Sbjct: 301 ECGIKHDGIEGVAIHDQKEKELSSNL 326
>SPAC6G10.12c |ace2||transcription factor Ace2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 533
Score = 40.3 bits (90), Expect = 4e-04
Identities = 23/67 (34%), Positives = 31/67 (46%), Gaps = 3/67 (4%)
Query: 210 KFDTIQKLSQHISTCDRSQRNCVQCNILFDSKTKLQQHLLTHNQPFPVTCECGDTFNNKE 269
K++ + H+S DR R C C F L++HL H P CEC FN +
Sbjct: 457 KYNVESHIQTHLS--DRPYR-CDLCKAGFVRHHDLKRHLRIHENGRPYVCECLKRFNRLD 513
Query: 270 MLMRHRQ 276
L RH+Q
Sbjct: 514 ALNRHKQ 520
Score = 26.2 bits (55), Expect = 7.0
Identities = 22/81 (27%), Positives = 31/81 (38%), Gaps = 8/81 (9%)
Query: 234 CNILFDSKTKLQQHLLTHNQPFPVTCE-CGDTFNNKEMLMRHRQTCYADQLQSMGWGYKC 292
CN K ++ H+ TH P C+ C F L RH ++ G Y C
Sbjct: 450 CNKRIARKYNVESHIQTHLSDRPYRCDLCKAGFVRHHDLKRHL------RIHENGRPYVC 503
Query: 293 KECGDVFKDRFQLYRHAKEHV 313
EC F L RH + ++
Sbjct: 504 -ECLKRFNRLDALNRHKQRNI 523
>SPAC1039.05c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 781
Score = 34.3 bits (75), Expect = 0.026
Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 3/57 (5%)
Query: 290 YKC--KECGDVFKDRFQLYRHAKEHVLKSDQRVCDICGHTFIGSDALLKHRNEDHKK 344
YKC + C F + RH + H S +C C +F SD L +H N+ H K
Sbjct: 17 YKCDFQGCTKSFTRKEHARRHFRSHT-NSKAFICPHCSSSFTRSDVLNRHVNQKHVK 72
>SPAC6F12.02 |rst2||transcription factor Rst2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 567
Score = 33.9 bits (74), Expect = 0.035
Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 8/54 (14%)
Query: 231 CVQCNILFDSKTKLQQHLLTHNQPFPVTCE--------CGDTFNNKEMLMRHRQ 276
C C F L++H+ +H P TC CG F+ +++L+RH+Q
Sbjct: 72 CETCTRAFARLEHLKRHIRSHTNEKPFTCSEIDGLPTGCGRQFSRRDLLLRHQQ 125
Score = 32.7 bits (71), Expect = 0.080
Identities = 18/62 (29%), Positives = 26/62 (41%), Gaps = 6/62 (9%)
Query: 290 YKCKECGDVFKDRFQLYRHAKEHVLKSDQRVCDI------CGHTFIGSDALLKHRNEDHK 343
Y C+ C F L RH + H + +I CG F D LL+H+ + H+
Sbjct: 70 YVCETCTRAFARLEHLKRHIRSHTNEKPFTCSEIDGLPTGCGRQFSRRDLLLRHQQKIHR 129
Query: 344 KP 345
P
Sbjct: 130 NP 131
>SPAC25B8.19c ||SPAC683.01c|transcription factor, zf-fungal
binuclear cluster type |Schizosaccharomyces pombe|chr
1|||Manual
Length = 522
Score = 31.9 bits (69), Expect = 0.14
Identities = 16/62 (25%), Positives = 27/62 (43%), Gaps = 3/62 (4%)
Query: 218 SQHISTCDRSQRNCVQCNILFDSKTKLQQHLLTHNQPFPVTCE---CGDTFNNKEMLMRH 274
S S+ + C +C F + L+ H +H P C+ CG FN + + RH
Sbjct: 457 SSSTSSAANVRYRCTECLQGFSRPSSLKIHTYSHTGERPFVCDYAGCGKAFNVRSNMRRH 516
Query: 275 RQ 276
++
Sbjct: 517 QR 518
>SPAC9E9.08 |rad26||ATRIP|Schizosaccharomyces pombe|chr 1|||Manual
Length = 614
Score = 31.5 bits (68), Expect = 0.19
Identities = 30/118 (25%), Positives = 59/118 (50%), Gaps = 5/118 (4%)
Query: 55 VDQLSQFYNLQLNARCSQDWLESCLQGKCKKTTETKL-TVQPLPDSEYNSDSLLEFLNNT 113
+D+L Q Q+ A+ SQ + S Q + + + Q + +S NS + L ++
Sbjct: 23 LDELEQQAQTQVQAQSSQVVVPSEKQKQNLNLPNSYTNSSQKVRESTVNSQASL---SSN 79
Query: 114 ENIEEYLNNLGKEDIPSIVNMLDRNEHTNDSVKNMNRTIKQCSPKKKEKTKNLQMEID 171
+ E L G+ I N+L ++E N +++++N +IKQ + + K + L+ EI+
Sbjct: 80 DLRTELLIKSGENAILR-ANLLKQSEANNAALESLNNSIKQKQDEYQRKLEELKKEIE 136
>SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 582
Score = 31.1 bits (67), Expect = 0.25
Identities = 18/51 (35%), Positives = 21/51 (41%), Gaps = 1/51 (1%)
Query: 287 GWGYKCKECGDVFKDRFQLYRHAKEHVLKSDQRVCDICGHTFIGSDALLKH 337
G + C EC FK L RH + VC ICG F D L +H
Sbjct: 420 GKSFVCPECSKKFKRSEHLRRHIRSLHTSEKPFVC-ICGKRFSRRDNLRQH 469
Score = 28.7 bits (61), Expect = 1.3
Identities = 17/55 (30%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
Query: 203 VCFACKLKFDTIQKLSQHISTCDRSQRNCV-QCNILFDSKTKLQQHLLTHNQPFP 256
VC C KF + L +HI + S++ V C F + L+QH H P
Sbjct: 424 VCPECSKKFKRSEHLRRHIRSLHTSEKPFVCICGKRFSRRDNLRQHERLHVNASP 478
>SPAC1805.15c |pub2||ubiquitin-protein ligase
Pub2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 671
Score = 31.1 bits (67), Expect = 0.25
Identities = 26/110 (23%), Positives = 48/110 (43%), Gaps = 3/110 (2%)
Query: 55 VDQLSQFYNLQLNARCSQDWLESCLQGKCKKTTETKLTVQPLPDSEYNSDSLLEFLNNTE 114
VD + N+ +N + ++L++ + K +TE + +E DS+L+ N E
Sbjct: 486 VDLIPNGRNIAVNNQNKMNYLKALTEHKLVTSTEEQFNALKGGLNELIPDSVLQIFNENE 545
Query: 115 NIEEYLNNLGKEDIPSIVNMLDRNEH--TNDSVKNMNRTIKQCSPKKKEK 162
++ LN D+ D + T+D V + + SP+KK K
Sbjct: 546 -LDTLLNGKRDIDVQDWKRFTDYRSYTETDDIVIWFWELLSEWSPEKKAK 594
>SPAC144.02 |||transcription factor |Schizosaccharomyces pombe|chr
1|||Manual
Length = 249
Score = 31.1 bits (67), Expect = 0.25
Identities = 18/54 (33%), Positives = 24/54 (44%), Gaps = 3/54 (5%)
Query: 292 CKECGDVFKDRFQLYRHAKEHVLKSDQRVCDI--CGHTFIGSDALLKHRNEDHK 343
C G V RF L H + H + +C + C +F SDAL KH H+
Sbjct: 80 CPRKGMVQTSRFALVAHLRSHTGEKPF-ICSVPECDRSFTRSDALAKHMRTVHE 132
>SPAC11D3.17 |||zinc finger protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 585
Score = 31.1 bits (67), Expect = 0.25
Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Query: 231 CVQCNILFDSKTKLQQHLLTHNQPFPVTCE-CGDTFNNKEMLMRHRQTCYADQ 282
C QC F L +H H++ P+ C C K++L RH Q + D+
Sbjct: 33 CDQCAKRFTRHENLTRHKACHSKAEPIPCPYCEIKCKRKDLLKRHIQRFHNDK 85
>SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 681
Score = 31.1 bits (67), Expect = 0.25
Identities = 23/81 (28%), Positives = 30/81 (37%), Gaps = 7/81 (8%)
Query: 234 CNILFDSKTKLQQHLLTHNQPFPVTCE-CGDTFNNKEMLMRHRQTCYADQLQSMGWGYKC 292
CN F L+ H+ TH P C C +F + RH +QL + + C
Sbjct: 577 CNKRFTRAYNLKSHMNTHTNYRPFQCSICKKSFARQHDKRRH------EQLHTGIKAFAC 630
Query: 293 KECGDVFKDRFQLYRHAKEHV 313
C F L RH K V
Sbjct: 631 VTCNQRFARMDALNRHYKSEV 651
>SPAC4H3.14c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 345
Score = 30.7 bits (66), Expect = 0.32
Identities = 22/101 (21%), Positives = 46/101 (45%), Gaps = 1/101 (0%)
Query: 64 LQLNARCSQDWLESCLQGKCKKTTETKLTVQPLPDSEYNSDSLLEFLNNTENIEEYLNNL 123
L R QD E + K+ ++ K+ +PL DS +NS+S E + + E ++
Sbjct: 204 LDAEIRTLQDTFEEVERTLTKQVSDAKIADKPLKDSMFNSNSEKEKIMHALEKAEKDADI 263
Query: 124 GKEDIPSIVNMLDRN-EHTNDSVKNMNRTIKQCSPKKKEKT 163
E I + L+ + E ++ +++N + + + E +
Sbjct: 264 YSEFIQQYMEQLESSLEKSSTAIENAQNRLAEMTAHLAESS 304
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 30.3 bits (65), Expect = 0.43
Identities = 11/26 (42%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
Query: 258 TCECGDTFNNKEMLMRHRQTC-YADQ 282
TC+CG F+N E +++H + C Y D+
Sbjct: 23 TCQCGTQFDNVERIVQHFKECRYRDE 48
Score = 27.1 bits (57), Expect = 4.0
Identities = 10/36 (27%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
Query: 204 CFACKL--KFDTIQKLSQHISTCDRSQRNCVQCNIL 237
CF C+ +FD ++++ QH C C +I+
Sbjct: 21 CFTCQCGTQFDNVERIVQHFKECRYRDETCKDDDIV 56
>SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 1000
Score = 30.3 bits (65), Expect = 0.43
Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Query: 54 CVDQLSQFYNLQLNARCSQDWLESCLQGKCKKTTETKLTVQP 95
C+DQ S+FY +L + Q L CL G +TK +QP
Sbjct: 229 CLDQFSEFYEKKLGLK--QKALTKCLWGDYYLDPKTKRVLQP 268
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase
Tlh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1919
Score = 30.3 bits (65), Expect = 0.43
Identities = 11/26 (42%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
Query: 258 TCECGDTFNNKEMLMRHRQTC-YADQ 282
TC+CG F+N E +++H + C Y D+
Sbjct: 23 TCQCGTQFDNVERIVQHFKECRYRDE 48
Score = 27.1 bits (57), Expect = 4.0
Identities = 10/36 (27%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
Query: 204 CFACKL--KFDTIQKLSQHISTCDRSQRNCVQCNIL 237
CF C+ +FD ++++ QH C C +I+
Sbjct: 21 CFTCQCGTQFDNVERIVQHFKECRYRDETCKDDDIV 56
>SPAPB1E7.06c |eme1||Holliday junction resolvase subunit
Eme1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 738
Score = 29.9 bits (64), Expect = 0.57
Identities = 19/76 (25%), Positives = 35/76 (46%), Gaps = 2/76 (2%)
Query: 91 LTVQPLPDSEYNSDSLLEFLNNTENIEEYLNNLGKED-IPSIVNMLDRNEHTNDSVKNMN 149
LT PL D + +S L L + ++ + L + +D P + L + + ND++ + +
Sbjct: 178 LTSSPLKDFQ-SSPPLSTVLQKSHSLHDILLDTNDDDHFPFTQSPLTKTKSFNDALTSSS 236
Query: 150 RTIKQCSPKKKEKTKN 165
+K C P T N
Sbjct: 237 SILKPCMPSIASPTSN 252
>SPBC1861.06c |mug131||S. pombe specific UPF0300 family protein
4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 433
Score = 29.9 bits (64), Expect = 0.57
Identities = 21/81 (25%), Positives = 37/81 (45%), Gaps = 1/81 (1%)
Query: 31 HLKSCLTITISPGDHLPKDICVSCVDQLSQFYNLQLNARCSQDWLESCLQGKCKKTTETK 90
HLKS T+ + D+L DI + C +++ +LNA S + S + T+
Sbjct: 23 HLKSLFTVCFTGADYLESDIELICQNEIQPQGLEKLNADSSNFYCNSLTSNQSLTTSMEA 82
Query: 91 LTVQPLPDSEYNSDSLLEFLN 111
L + + + +D LL+ N
Sbjct: 83 LDLSSSLTTPH-ADKLLKLSN 102
>SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog
1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 941
Score = 29.5 bits (63), Expect = 0.75
Identities = 24/95 (25%), Positives = 42/95 (44%), Gaps = 1/95 (1%)
Query: 84 KKTTETKLTVQPLPDSEYNSDSLLEFLNNTENIEEYLNNLGKEDIPSIVNMLDRNEHTND 143
KK+ +T +Q L NS LL+ +N +E + L + S +L N H +D
Sbjct: 423 KKSNDTHRILQHLLMGRGNSYDLLKMADNFSITKEIHSLLSPLESSSAFRLLLLNMHPHD 482
Query: 144 SVKNMNRTIKQCSPKKKEKTKNLQMEIDVLDSDVE 178
+K + + K+K N + E +V+ + E
Sbjct: 483 ELKQLINNAVDENALMKQKI-NEEEETEVIAQEAE 516
>SPBC215.06c |||human LYHRT homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 178
Score = 28.7 bits (61), Expect = 1.3
Identities = 12/32 (37%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Query: 216 KLSQHISTCDRSQRNCVQCNILFDSKTKLQQH 247
KL QH S C + C+ CN F+ +T + H
Sbjct: 15 KLDQHRSRCHGAYFTCIDCNTTFE-RTDYRNH 45
>SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1208
Score = 28.7 bits (61), Expect = 1.3
Identities = 19/71 (26%), Positives = 39/71 (54%), Gaps = 3/71 (4%)
Query: 110 LNNTENIEEYLNNLGKEDIPSIVNMLDRNEHTNDSVKNMNRTIKQCSPKKKEKTKNLQME 169
LN T I+EY N L K+ + +++ ++ ++ ++ + +I + ++KE T NL+ +
Sbjct: 564 LNGT--IDEYRNKL-KDKEETYNEVMNAFQYKDNDLRRFHESINKLQDREKELTSNLEKK 620
Query: 170 IDVLDSDVEIV 180
V+ S E V
Sbjct: 621 NLVISSLRETV 631
>SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin
homolog|Schizosaccharomyces pombe|chr 3|||Manual
Length = 997
Score = 28.7 bits (61), Expect = 1.3
Identities = 30/103 (29%), Positives = 47/103 (45%), Gaps = 13/103 (12%)
Query: 79 LQGKCKKTTET--KLTVQPLPDSEYNSDSLLEFLNNTENIEEYLNNLGKEDIP-SIVNML 135
LQ K +T E T L + E N + L N E IEE L + K + + +
Sbjct: 758 LQSKNNQTVEAVNTETSDKLQEKEANHE-----LENIEKIEEKLTEVDKVSLSDAFPDQE 812
Query: 136 DRNEHTNDSVKNMNRTIKQCSPKKKEKTKNLQMEIDVLDSDVE 178
+N T SV+N R++ + +P+K+ K + +V DVE
Sbjct: 813 IKNSRT--SVQNGTRSVSKNTPEKETKVDKID---NVSKKDVE 850
>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 713
Score = 28.3 bits (60), Expect = 1.7
Identities = 28/94 (29%), Positives = 41/94 (43%), Gaps = 12/94 (12%)
Query: 33 KSCLTITISPGDHLPKDICVSCVD---QLSQFYNLQLNARCSQDWLESCLQGKCKKTTET 89
K+CL + SP + I VS VD ++F N + + Q+ S L T ET
Sbjct: 9 KTCLDVVDSPSSRQKQTIAVSLVDGKNYPTRFLNSRTIDKLKQELNTSNLSTGEMSTNET 68
Query: 90 KLTVQPLPD---SEYNSDSLLEFLNNTENIEEYL 120
Q + SE N DS+ +E+ +EYL
Sbjct: 69 LKNAQEVAGKLLSEENEDSI------SEHFDEYL 96
Score = 25.8 bits (54), Expect = 9.2
Identities = 11/45 (24%), Positives = 28/45 (62%)
Query: 99 SEYNSDSLLEFLNNTENIEEYLNNLGKEDIPSIVNMLDRNEHTND 143
S S+ + +++++N ++++ N +DIPS + L +++TN+
Sbjct: 571 SSRGSNKTRKSISHSKNTDKHVGNELPQDIPSWLRSLRLHKYTNN 615
>SPAC144.03 |ade2|min10, min3|adenylosuccinate synthetase
Ade2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 27.9 bits (59), Expect = 2.3
Identities = 10/32 (31%), Positives = 16/32 (50%)
Query: 1 MCENIDKCCRICLDMNSNHVCILNDPTIILHL 32
+C+N+D C R N+ H + N T H+
Sbjct: 36 LCDNVDVCARCQGGNNAGHTIVANGVTYDFHI 67
>SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit
Psm3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1194
Score = 27.9 bits (59), Expect = 2.3
Identities = 16/80 (20%), Positives = 38/80 (47%), Gaps = 1/80 (1%)
Query: 104 DSLLEFLNNTENIEEYLNNLGKEDIPSIVNMLDRNEHTNDSVKNMNRTIKQCSPKKKEKT 163
D L+ T +++E +++ + ++ + + ND ++ + + PK E
Sbjct: 727 DELVTITGETTDLQESMHHKSRMLELVVLELHTLEQQANDLKSELSSEMDELDPKDVEAL 786
Query: 164 KNLQMEIDVLDSDVE-IVKE 182
K+L +I+ L + + I+KE
Sbjct: 787 KSLSGQIENLSHEFDAIIKE 806
>SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 732
Score = 27.5 bits (58), Expect = 3.0
Identities = 24/87 (27%), Positives = 42/87 (48%), Gaps = 10/87 (11%)
Query: 264 TFNNKEMLMRHRQTC-YADQLQSMGW-GY-KCKECGDVFKDRFQLYRHAKEHVLKSDQRV 320
T +K+ L +H + L+ G+ G+ KC+ C F D +L++H +E + +
Sbjct: 216 TLFSKKGLTKHNEVGDQGSDLEITGFKGHPKCEFCNTHFYDDDELFKHCREKHERC--YI 273
Query: 321 CD-ICGHT----FIGSDALLKHRNEDH 342
CD + G F D+L +H +DH
Sbjct: 274 CDQVAGRPTHQYFKNYDSLERHFEKDH 300
Score = 25.8 bits (54), Expect = 9.2
Identities = 9/24 (37%), Positives = 12/24 (50%)
Query: 321 CDICGHTFIGSDALLKHRNEDHKK 344
C+ C F D L KH E H++
Sbjct: 247 CEFCNTHFYDDDELFKHCREKHER 270
>SPAC1142.01 ||SPAC17G6.18|DUF654 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 667
Score = 27.5 bits (58), Expect = 3.0
Identities = 21/100 (21%), Positives = 51/100 (51%)
Query: 82 KCKKTTETKLTVQPLPDSEYNSDSLLEFLNNTENIEEYLNNLGKEDIPSIVNMLDRNEHT 141
K K+ + K+T + D++ + + LE L +++NI++ ++ + K + ++++
Sbjct: 102 KKKQQKKKKVTGKRDLDNQSSDNEKLEGLESSKNIDDDIDEIEKAAAELKLKYREQDQVE 161
Query: 142 NDSVKNMNRTIKQCSPKKKEKTKNLQMEIDVLDSDVEIVK 181
+ + + TI ++ K L + I +L+ D+EI K
Sbjct: 162 HVAGVEESATIPLDKELDEKLNKLLGVNISMLNPDLEIRK 201
>SPBC887.03c |noc3||Noc2p-Noc3p complex subunit Noc3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 747
Score = 27.5 bits (58), Expect = 3.0
Identities = 14/62 (22%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Query: 67 NARCSQDWLESCLQGKCKKTTETKLTVQPLPDSEYNSDSLLEFLNNTENIEEYLNNLGKE 126
N++ S + ++ KKTT+ + + + + E + + EF N + +YL+++ E
Sbjct: 30 NSQSSTEPRKNATSLDSKKTTKKGVALPEIAERELTQEDI-EFFNENPSSLKYLSSINPE 88
Query: 127 DI 128
D+
Sbjct: 89 DL 90
>SPBP4H10.06c |cut14|smc2, smc2|condensin subunit
Cut14|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1172
Score = 27.1 bits (57), Expect = 4.0
Identities = 12/67 (17%), Positives = 35/67 (52%)
Query: 100 EYNSDSLLEFLNNTENIEEYLNNLGKEDIPSIVNMLDRNEHTNDSVKNMNRTIKQCSPKK 159
+++S ++ + N++ ++ K P +++M+D E +++M +TI + K
Sbjct: 957 DFHSQNMRQCREQLHNLKPRFASMRKAINPKVMDMIDGVEKKEAKLRSMIKTIHRDKKKI 1016
Query: 160 KEKTKNL 166
++ K++
Sbjct: 1017 QDTVKSI 1023
>SPBC660.12c |||peptide epimerase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 392
Score = 27.1 bits (57), Expect = 4.0
Identities = 13/46 (28%), Positives = 22/46 (47%)
Query: 142 NDSVKNMNRTIKQCSPKKKEKTKNLQMEIDVLDSDVEIVKEIILKE 187
ND + +N C+ + +DV+D VEI +++ LKE
Sbjct: 103 NDEILMLNVAYPTCTYAADFAKNQHNLRLDVIDVGVEIDEDLFLKE 148
>SPCC576.01c ||SPCPB1C11.04c|sulfonate dioxygenase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 413
Score = 26.6 bits (56), Expect = 5.3
Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 4/46 (8%)
Query: 86 TTETKLTVQPLPDSEYNSDSLLEFLNNTENIEEYLNNLGKEDIPSI 131
TT L V P+P E+N+D + F EN++ LNNL E I
Sbjct: 29 TTSQGLRVSPVPLPEHNTD--VGFGALIENVD--LNNLSDEQFEDI 70
>SPBC25B2.04c |||mitochondrial ribosome assembly
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 328
Score = 26.6 bits (56), Expect = 5.3
Identities = 11/33 (33%), Positives = 18/33 (54%)
Query: 259 CECGDTFNNKEMLMRHRQTCYADQLQSMGWGYK 291
C+ DTF+ K + +HR A Q Q++ +K
Sbjct: 72 CDLADTFHTKAKVSKHRIQNLAQQFQNVECWFK 104
>SPBC18H10.06c |swd2|swd2.1|COMPASS complex subunit
Swd2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 357
Score = 26.6 bits (56), Expect = 5.3
Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Query: 68 ARCSQDWLE--SCLQGKCKKTTETKLTVQPLPDSEYNSDSLLEFLNNTENIEEYLN 121
A C+ D L+ +C+ GK K+ +K L ++S+SL+ +N YL+
Sbjct: 43 ASCTDDTLQLYNCISGKFVKSLASKKYGAHLGRFTHHSNSLIHASTKEDNTVRYLD 98
>SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1183
Score = 26.6 bits (56), Expect = 5.3
Identities = 17/67 (25%), Positives = 39/67 (58%), Gaps = 3/67 (4%)
Query: 114 ENIEEYLNN-LGKEDIPSIVNMLDRNEHTNDSVKNMNRTI-KQCSPKKKEKTKNLQMEID 171
+ +++Y+ N L KE++ S++ L E + S+ + ++ + KQ + K+K K L+ ++
Sbjct: 90 KRLDKYIENKLKKEEVASLIAKL-AEERIDTSLLSSSKNLGKQATAKEKLKKSLLEEKLG 148
Query: 172 VLDSDVE 178
+ SD +
Sbjct: 149 LPLSDAD 155
>SPBC2F12.11c |rep2||transcriptional activator
Rep2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 219
Score = 26.6 bits (56), Expect = 5.3
Identities = 10/25 (40%), Positives = 13/25 (52%)
Query: 254 PFPVTCECGDTFNNKEMLMRHRQTC 278
P + +C TFN+ LM H TC
Sbjct: 173 PNLICSKCNTTFNHSTALMMHEATC 197
>SPCC162.08c |nup211||nuclear pore complex associated
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1837
Score = 26.6 bits (56), Expect = 5.3
Identities = 20/73 (27%), Positives = 38/73 (52%), Gaps = 4/73 (5%)
Query: 116 IEEYLNNLGKEDIPSIVNMLDRNEHTNDSVKNMNRTIKQCSPKKKEKTKNLQMEIDVLDS 175
+E L+ + KE + + D H S+K++N +KQ + ++T LQ + D
Sbjct: 90 LENELSQI-KEYLREKSSSYDTVLHDCSSLKSVNEALKQAQDQNLKQTAQLQNLLS--DK 146
Query: 176 DVEIVKEI-ILKE 187
+ E+ K+I I+K+
Sbjct: 147 EKEVEKKITIIKD 159
>SPBC2D10.06 |rep1|rec16|MBF transcription factor complex subunit
Rep1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 472
Score = 26.2 bits (55), Expect = 7.0
Identities = 10/27 (37%), Positives = 15/27 (55%)
Query: 203 VCFACKLKFDTIQKLSQHISTCDRSQR 229
+C C F +I KL +H S+C +R
Sbjct: 421 ICCYCTKPFLSISKLQEHESSCSHVER 447
>SPAC57A7.13 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 565
Score = 26.2 bits (55), Expect = 7.0
Identities = 11/37 (29%), Positives = 19/37 (51%)
Query: 302 RFQLYRHAKEHVLKSDQRVCDICGHTFIGSDALLKHR 338
+FQ + H +H+ +S ++ H + S LL HR
Sbjct: 412 KFQSWGHVVKHITQSIMHNNNLKNHELVSSAELLMHR 448
>SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase
Ino80|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1604
Score = 26.2 bits (55), Expect = 7.0
Identities = 12/28 (42%), Positives = 14/28 (50%)
Query: 142 NDSVKNMNRTIKQCSPKKKEKTKNLQME 169
ND+ KN N K K K+KT Q E
Sbjct: 544 NDTSKNANGETKSTPKKSKKKTSKAQQE 571
>SPBC365.11 |||GRIP domain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 266
Score = 25.8 bits (54), Expect = 9.2
Identities = 12/51 (23%), Positives = 29/51 (56%), Gaps = 3/51 (5%)
Query: 100 EYNSDSLLEFLNNTENIEEYLNNLGKEDIPS---IVNMLDRNEHTNDSVKN 147
E + +++ + EN+++ L N+G E + S I ++++ + +SVK+
Sbjct: 133 EKSDETVCKLKEENENLQDMLRNVGNELVESRDEIKELIEKQKVQKESVKS 183
>SPBC83.01 |ucp8||UBA/EH/EF hand domain protein
Ucp8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 884
Score = 25.8 bits (54), Expect = 9.2
Identities = 11/51 (21%), Positives = 29/51 (56%)
Query: 125 KEDIPSIVNMLDRNEHTNDSVKNMNRTIKQCSPKKKEKTKNLQMEIDVLDS 175
+E++ + ++ ++ ++++ +TIKQ +KK + L+ E+ LD+
Sbjct: 608 QEEMRKLEEKIESTKYGLETIQTSGKTIKQRIEQKKTRLMILREELQELDA 658
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.320 0.134 0.419
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,714,282
Number of Sequences: 5004
Number of extensions: 74886
Number of successful extensions: 313
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 266
Number of HSP's gapped (non-prelim): 59
length of query: 351
length of database: 2,362,478
effective HSP length: 73
effective length of query: 278
effective length of database: 1,997,186
effective search space: 555217708
effective search space used: 555217708
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 54 (25.8 bits)
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