Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000833-TA|BGIBMGA000833-PA|undefined
         (299 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292350-1|CAL23162.2|  429|Tribolium castaneum gustatory recept...    28   0.097
AM292328-1|CAL23140.2|  429|Tribolium castaneum gustatory recept...    28   0.097
AM292323-1|CAL23135.2|  587|Tribolium castaneum gustatory recept...    24   1.6  
AJ457831-1|CAD29886.1|  249|Tribolium castaneum helix-loop-helix...    24   1.6  
X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       22   4.8  

>AM292350-1|CAL23162.2|  429|Tribolium castaneum gustatory receptor
           candidate 29 protein.
          Length = 429

 Score = 27.9 bits (59), Expect = 0.097
 Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 2/30 (6%)

Query: 76  TIC-CVFGSKWPDPSRDPLLFIANPVEAEV 104
           T+C C+FG K  D S  P+L + N V A+V
Sbjct: 333 TVCLCLFGGKVNDESTQPML-VLNSVSADV 361


>AM292328-1|CAL23140.2|  429|Tribolium castaneum gustatory receptor
           candidate 7 protein.
          Length = 429

 Score = 27.9 bits (59), Expect = 0.097
 Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 2/30 (6%)

Query: 76  TIC-CVFGSKWPDPSRDPLLFIANPVEAEV 104
           T+C C+FG K  D S  P+L + N V A+V
Sbjct: 333 TVCLCLFGGKVNDESTQPML-VLNSVSADV 361


>AM292323-1|CAL23135.2|  587|Tribolium castaneum gustatory receptor
           candidate 2 protein.
          Length = 587

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 13/29 (44%), Positives = 18/29 (62%), Gaps = 2/29 (6%)

Query: 77  IC-CVFGSKWPDPSRDPLLFIANPVEAEV 104
           +C C+FG+K  D S  PLL + N V  E+
Sbjct: 332 VCLCLFGAKVHDESIKPLLTL-NSVPTEI 359


>AJ457831-1|CAD29886.1|  249|Tribolium castaneum helix-loop-helix
           transcription factor protein.
          Length = 249

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 11/29 (37%), Positives = 17/29 (58%)

Query: 5   NPVEADMPGHWMPLSVLKRILEGPKKEKP 33
           +P ++  P    PLS++ R  E P +EKP
Sbjct: 217 SPSQSPEPESVRPLSLVVRRCEEPTEEKP 245


>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 11/27 (40%), Positives = 17/27 (62%), Gaps = 2/27 (7%)

Query: 23  RILEGPKKE--KPQTYPIVKLKKKLVF 47
           +I   PK E  KP+T P + L+++L F
Sbjct: 339 KIKTQPKAEEAKPETLPFLNLQQQLPF 365


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.318    0.139    0.434 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 37,693
Number of Sequences: 317
Number of extensions: 1366
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 2
Number of HSP's gapped (non-prelim): 5
length of query: 299
length of database: 114,650
effective HSP length: 56
effective length of query: 243
effective length of database: 96,898
effective search space: 23546214
effective search space used: 23546214
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 43 (21.4 bits)