GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000833-TA|BGIBMGA000833-PA|undefined
         (299 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_24621| Best HMM Match : DUF164 (HMM E-Value=0.39)                   33   0.28 
SB_5026| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   1.1  
SB_49126| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.6  
SB_40643| Best HMM Match : Oxidored_q2 (HMM E-Value=0.29)              28   8.1  

>SB_24621| Best HMM Match : DUF164 (HMM E-Value=0.39)
          Length = 566

 Score = 33.1 bits (72), Expect = 0.28
 Identities = 20/61 (32%), Positives = 35/61 (57%), Gaps = 1/61 (1%)

Query: 17  PLSVLKRILEGPKKEKPQTYPIVKLKKKLVFI-NITPPISKKTESTTEMFVIIVKTTLAL 75
           PLS+ K++L   KK +  T  ++ L KKL+ +      ++KK +S T+  + + K  L+L
Sbjct: 345 PLSLTKKLLSLTKKLQSLTKKLLSLTKKLLSLTKKLLSLTKKLQSLTKKLLSLTKKLLSL 404

Query: 76  T 76
           T
Sbjct: 405 T 405



 Score = 31.9 bits (69), Expect = 0.65
 Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 1/61 (1%)

Query: 17 PLSVLKRILEGPKKEKPQTYPIVKLKKKLVFINITP-PISKKTESTTEMFVIIVKTTLAL 75
          PLS+ K++L   KK    T   + L KKL+ +   P  ++KK  S T+  + + K  L+L
Sbjct: 36 PLSLTKKLLSLTKKLLSLTKKPLSLTKKLLSLTKKPLSLTKKLLSLTKKLLSLTKKLLSL 95

Query: 76 T 76
          T
Sbjct: 96 T 96



 Score = 30.7 bits (66), Expect = 1.5
 Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 1/61 (1%)

Query: 17  PLSVLKRILEGPKKEKPQTYPIVKLKKKLVFI-NITPPISKKTESTTEMFVIIVKTTLAL 75
           PLS+ K++L   KK    T  ++ L KKL+ +      ++KK  S T+  + + K  L+L
Sbjct: 57  PLSLTKKLLSLTKKPLSLTKKLLSLTKKLLSLTKKLLSLTKKLLSLTKKLLSLTKKLLSL 116

Query: 76  T 76
           T
Sbjct: 117 T 117



 Score = 30.7 bits (66), Expect = 1.5
 Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 1/61 (1%)

Query: 17  PLSVLKRILEGPKKEKPQTYPIVKLKKKLVFI-NITPPISKKTESTTEMFVIIVKTTLAL 75
           PLS+ K++L   KK    T  ++ L KKL+ +      ++KK  S T+  + + K  L+L
Sbjct: 436 PLSLTKKLLSLTKKPLSLTKKLLSLTKKLLSLTKKLLSLTKKLLSLTKKLLSLTKKLLSL 495

Query: 76  T 76
           T
Sbjct: 496 T 496


>SB_5026| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 156

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 14/27 (51%), Positives = 20/27 (74%)

Query: 33  PQTYPIVKLKKKLVFINITPPISKKTE 59
           P+T P++ LKK L  I++TP +SK TE
Sbjct: 80  PKTKPVLDLKKDLRPISLTPCVSKVTE 106


>SB_49126| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 559

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 13/27 (48%), Positives = 19/27 (70%)

Query: 33  PQTYPIVKLKKKLVFINITPPISKKTE 59
           P+T P++ LKK L  I++TP +SK  E
Sbjct: 206 PKTKPVLDLKKDLRPISLTPCVSKVAE 232


>SB_40643| Best HMM Match : Oxidored_q2 (HMM E-Value=0.29)
          Length = 144

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 2/50 (4%)

Query: 45 LVFINITPPISKKTESTTEMFVIIVKTTLALTICCVFGSKWPDPSRDPLL 94
          ++ I  T   +  T +TT + +II+ TT   TI  +  S    P   PLL
Sbjct: 49 IIIITTTTTTTTTTTTTTIIIIIIITTTTTTTIIIILSSSQLHPK--PLL 96


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.139    0.434 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,361,078
Number of Sequences: 59808
Number of extensions: 178588
Number of successful extensions: 391
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 380
Number of HSP's gapped (non-prelim): 11
length of query: 299
length of database: 16,821,457
effective HSP length: 82
effective length of query: 217
effective length of database: 11,917,201
effective search space: 2586032617
effective search space used: 2586032617
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 60 (28.3 bits)