GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000833-TA|BGIBMGA000833-PA|undefined
         (299 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB097148-1|BAC82627.1|  357|Anopheles gambiae gag-like protein p...    25   2.6  
M93690-1|AAA29364.1|  613|Anopheles gambiae ORF1 protein.              24   6.0  

>AB097148-1|BAC82627.1|  357|Anopheles gambiae gag-like protein
           protein.
          Length = 357

 Score = 25.0 bits (52), Expect = 2.6
 Identities = 12/34 (35%), Positives = 17/34 (50%), Gaps = 1/34 (2%)

Query: 3   IANPVEADMP-GHWMPLSVLKRILEGPKKEKPQT 35
           +ANP     P    +PL VL     GP  ++P+T
Sbjct: 280 VANPAATSAPLAFKVPLDVLPAPFPGPSTDEPRT 313


>M93690-1|AAA29364.1|  613|Anopheles gambiae ORF1 protein.
          Length = 613

 Score = 23.8 bits (49), Expect = 6.0
 Identities = 13/63 (20%), Positives = 29/63 (46%)

Query: 16  MPLSVLKRILEGPKKEKPQTYPIVKLKKKLVFINITPPISKKTESTTEMFVIIVKTTLAL 75
           +PL VL ++    ++ +  T P     K     +  P +S+  ES   + + + + +  L
Sbjct: 97  VPLVVLDKLPSQSQQREEMTVPATSTPKAGKCSSAEPSLSEMNESLKLLAMQVAQLSKEL 156

Query: 76  TIC 78
           ++C
Sbjct: 157 SLC 159


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.318    0.139    0.434 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 158,630
Number of Sequences: 2123
Number of extensions: 5002
Number of successful extensions: 4
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 3
Number of HSP's gapped (non-prelim): 2
length of query: 299
length of database: 516,269
effective HSP length: 64
effective length of query: 235
effective length of database: 380,397
effective search space: 89393295
effective search space used: 89393295
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 48 (23.4 bits)