GeneModel BLAST Result against uniref50

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000831-TA|BGIBMGA000831-PA|undefined
         (55 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q9XA51 Cluster: Putative molybdenum cofactor biosynthes...    31   4.6  
UniRef50_A1A0G5 Cluster: Two component system response regulator...    30   8.0  

>UniRef50_Q9XA51 Cluster: Putative molybdenum cofactor biosynthesis
           protein; n=2; Streptomyces|Rep: Putative molybdenum
           cofactor biosynthesis protein - Streptomyces coelicolor
          Length = 465

 Score = 31.1 bits (67), Expect = 4.6
 Identities = 13/32 (40%), Positives = 20/32 (62%)

Query: 20  ERIVSSHRSPAGLIDGGSAAVLLGLRIRKETT 51
           E +++ H +PA LIDG +  +  G RI  +TT
Sbjct: 137 EGVLAGHAAPAPLIDGEAVRIATGARIPPDTT 168


>UniRef50_A1A0G5 Cluster: Two component system response regulatory
          protein; n=1; Bifidobacterium adolescentis ATCC
          15703|Rep: Two component system response regulatory
          protein - Bifidobacterium adolescentis (strain ATCC
          15703 / DSM 20083)
          Length = 105

 Score = 30.3 bits (65), Expect = 8.0
 Identities = 15/38 (39%), Positives = 21/38 (55%)

Query: 16 YSTVERIVSSHRSPAGLIDGGSAAVLLGLRIRKETTPR 53
          Y TV R   S R P+ + +  S+AV+ GL I K   P+
Sbjct: 4  YRTVRRSPWSERQPSAVSNAPSSAVMCGLNITKMRPPK 41


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.319    0.132    0.357 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 56,186,530
Number of Sequences: 1657284
Number of extensions: 1485125
Number of successful extensions: 3613
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 3611
Number of HSP's gapped (non-prelim): 2
length of query: 55
length of database: 575,637,011
effective HSP length: 35
effective length of query: 20
effective length of database: 517,632,071
effective search space: 10352641420
effective search space used: 10352641420
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 65 (30.3 bits)