GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000831-TA|BGIBMGA000831-PA|undefined
         (55 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory recept...    19   5.2  
AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head orthol...    18   6.9  

>AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory receptor
           candidate 51 protein.
          Length = 771

 Score = 18.6 bits (36), Expect = 5.2
 Identities = 9/34 (26%), Positives = 17/34 (50%)

Query: 11  ITLSAYSTVERIVSSHRSPAGLIDGGSAAVLLGL 44
           I L  + +   +VS    P G++D G+  + + L
Sbjct: 637 ILLITFQSGLNVVSCINFPLGVLDRGNFDIEIAL 670


>AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head
           orthologue protein.
          Length = 431

 Score = 18.2 bits (35), Expect = 6.9
 Identities = 6/20 (30%), Positives = 13/20 (65%)

Query: 20  ERIVSSHRSPAGLIDGGSAA 39
           E I  +H+SP+  +D  +++
Sbjct: 242 ELIRQTHKSPSHSVDNSNSS 261


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.319    0.132    0.357 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,629
Number of Sequences: 317
Number of extensions: 249
Number of successful extensions: 2
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2
length of query: 55
length of database: 114,650
effective HSP length: 35
effective length of query: 20
effective length of database: 103,555
effective search space:  2071100
effective search space used:  2071100
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 34 (18.6 bits)
S2: 34 (17.8 bits)