GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000831-TA|BGIBMGA000831-PA|undefined
         (55 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1322.13 |ade6|min1|phosphoribosylaminoimidazole carboxylase ...    23   3.7  
SPBC4.06 |||acid phosphatase |Schizosaccharomyces pombe|chr 2|||...    23   4.9  
SPAC1687.11 |spb1||rRNA methyltransferase Spb1 |Schizosaccharomy...    23   4.9  
SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1 |Schizosacc...    23   6.4  

>SPCC1322.13 |ade6|min1|phosphoribosylaminoimidazole carboxylase
           Ade6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 552

 Score = 23.4 bits (48), Expect = 3.7
 Identities = 10/25 (40%), Positives = 15/25 (60%)

Query: 22  IVSSHRSPAGLIDGGSAAVLLGLRI 46
           IVS+HR+P  ++     A   GLR+
Sbjct: 419 IVSAHRTPDRMVTYARTAASRGLRV 443


>SPBC4.06 |||acid phosphatase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 462

 Score = 23.0 bits (47), Expect = 4.9
 Identities = 10/20 (50%), Positives = 15/20 (75%)

Query: 21  RIVSSHRSPAGLIDGGSAAV 40
           R+VSSH   +GL+D  +AA+
Sbjct: 235 RVVSSHPRLSGLLDTINAAI 254


>SPAC1687.11 |spb1||rRNA methyltransferase Spb1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 802

 Score = 23.0 bits (47), Expect = 4.9
 Identities = 11/27 (40%), Positives = 15/27 (55%)

Query: 10  IITLSAYSTVERIVSSHRSPAGLIDGG 36
           I+T  A +  + I S  +S A LID G
Sbjct: 621 IVTAEAMTLAQDIASRRKSKADLIDEG 647


>SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1072

 Score = 22.6 bits (46), Expect = 6.4
 Identities = 10/18 (55%), Positives = 12/18 (66%)

Query: 28   SPAGLIDGGSAAVLLGLR 45
            SP+ LIDG     +LGLR
Sbjct: 1019 SPSDLIDGSLIESILGLR 1036


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.319    0.132    0.357 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 203,601
Number of Sequences: 5004
Number of extensions: 4806
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 5
Number of HSP's gapped (non-prelim): 4
length of query: 55
length of database: 2,362,478
effective HSP length: 36
effective length of query: 19
effective length of database: 2,182,334
effective search space: 41464346
effective search space used: 41464346
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 45 (22.2 bits)