GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000831-TA|BGIBMGA000831-PA|undefined
         (55 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0523 + 3791139-3791185,3791307-3791653,3791741-3791808,379...    27   2.4  
03_06_0269 - 32761354-32761857,32762094-32762190,32762387-327624...    26   3.2  
12_02_0769 + 23001558-23001995                                         25   5.6  
08_02_0819 - 21529913-21530064,21531016-21531082,21531284-215313...    25   5.6  
03_05_1065 + 30061588-30061883,30061995-30062056,30062196-300622...    25   5.6  
07_03_0496 - 18758767-18760113                                         25   9.8  
07_03_0489 - 18686806-18687681,18687816-18687830                       25   9.8  
07_03_0361 + 17215312-17216217                                         25   9.8  
04_04_0523 - 25900802-25902548,25902640-25903037                       25   9.8  

>06_01_0523 +
           3791139-3791185,3791307-3791653,3791741-3791808,
           3791932-3791946
          Length = 158

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 10/26 (38%), Positives = 18/26 (69%)

Query: 3   YTVKAAAIITLSAYSTVERIVSSHRS 28
           +T+  + + + SA+ST  R++S HRS
Sbjct: 84  FTIHVSTVASESAFSTNGRVLSEHRS 109


>03_06_0269 -
           32761354-32761857,32762094-32762190,32762387-32762421,
           32763035-32763040
          Length = 213

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 1/50 (2%)

Query: 4   TVKAAAIITLSAYSTVERIVSSHRSPAGLIDGGSAAVLLGLRIRKETTPR 53
           TVKA  + T+     +  + SS      + DGGS +V  G ++ +E TP+
Sbjct: 100 TVKAKTVATVVEKKPLASL-SSTPLVTEVTDGGSGSVADGKQVMEEDTPK 148


>12_02_0769 + 23001558-23001995
          Length = 145

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 13/26 (50%), Positives = 16/26 (61%)

Query: 24 SSHRSPAGLIDGGSAAVLLGLRIRKE 49
          SS  SPAG  DG SA V++    R+E
Sbjct: 3  SSSLSPAGSSDGDSAGVVVAADHRRE 28


>08_02_0819 -
           21529913-21530064,21531016-21531082,21531284-21531373,
           21531506-21531622,21532026-21532145,21532313-21533581
          Length = 604

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 10/22 (45%), Positives = 15/22 (68%)

Query: 20  ERIVSSHRSPAGLIDGGSAAVL 41
           +R+V  HR PA ++ G  +AVL
Sbjct: 212 KRVVEQHRWPAAMMGGRGSAVL 233


>03_05_1065 +
           30061588-30061883,30061995-30062056,30062196-30062276,
           30062391-30062464,30062547-30062629,30063044-30063147,
           30063526-30063665,30063736-30063783,30063939-30063991,
           30064178-30064262,30064346-30064412,30064496-30064606,
           30065262-30065283,30066244-30071110,30071186-30071374,
           30071463-30071577,30072329-30073388,30074247-30074694,
           30074966-30075019,30075105-30076898,30076989-30077949,
           30078271-30078384,30078459-30078613,30078934-30079026,
           30079341-30079613,30093423-30093975,30094465-30094540,
           30094619-30094718
          Length = 4025

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 12/32 (37%), Positives = 20/32 (62%), Gaps = 3/32 (9%)

Query: 3   YTVKAAAIITLSAYSTVERIVSSHRSPAGLID 34
           Y V+ AA+   SAY+ +  ++ +H +P GL D
Sbjct: 411 YAVRRAAV---SAYAALCAVLCAHEAPGGLPD 439


>07_03_0496 - 18758767-18760113
          Length = 448

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 10/18 (55%), Positives = 14/18 (77%)

Query: 17  STVERIVSSHRSPAGLID 34
           ++VERI+   RSP G+ID
Sbjct: 226 TSVERIIRQPRSPDGVID 243


>07_03_0489 - 18686806-18687681,18687816-18687830
          Length = 296

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 10/18 (55%), Positives = 13/18 (72%)

Query: 17  STVERIVSSHRSPAGLID 34
           + VERI+   RSP G+ID
Sbjct: 176 TNVERIIRQPRSPDGMID 193


>07_03_0361 + 17215312-17216217
          Length = 301

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 9/31 (29%), Positives = 18/31 (58%)

Query: 1   MFYTVKAAAIITLSAYSTVERIVSSHRSPAG 31
           ++Y    +A++ L + + VE ++S HR   G
Sbjct: 177 LYYGDHHSAVVQLHSRADVESLISDHRGEGG 207


>04_04_0523 - 25900802-25902548,25902640-25903037
          Length = 714

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 12/35 (34%), Positives = 19/35 (54%)

Query: 6  KAAAIITLSAYSTVERIVSSHRSPAGLIDGGSAAV 40
          KAA  ++ S    V+R+V  +R P   I+G S  +
Sbjct: 31 KAAEELSGSHLDAVKRMVEEYRRPVVTIEGASLTI 65


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.319    0.132    0.357 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,623,753
Number of Sequences: 37544
Number of extensions: 46578
Number of successful extensions: 127
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 120
Number of HSP's gapped (non-prelim): 9
length of query: 55
length of database: 14,793,348
effective HSP length: 36
effective length of query: 19
effective length of database: 13,441,764
effective search space: 255393516
effective search space used: 255393516
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 51 (24.6 bits)