GeneModel BLAST Result against fruitfly

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000831-TA|BGIBMGA000831-PA|undefined
         (55 letters)

Database: fruitfly 
           52,641 sequences; 24,830,863 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY129451-1|AAM76193.1|  787|Drosophila melanogaster RE01517p pro...    27   4.1  
AE014298-1891|AAF48260.1|  787|Drosophila melanogaster CG10617-P...    27   4.1  

>AY129451-1|AAM76193.1|  787|Drosophila melanogaster RE01517p
           protein.
          Length = 787

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 16/45 (35%), Positives = 23/45 (51%)

Query: 1   MFYTVKAAAIITLSAYSTVERIVSSHRSPAGLIDGGSAAVLLGLR 45
           M ++V   ++ T     TV  + +S  +P G I  GS AV  GLR
Sbjct: 689 MIFSVPPPSLTTTQLRVTVFGVTTSGVTPLGHIVAGSCAVGKGLR 733


>AE014298-1891|AAF48260.1|  787|Drosophila melanogaster CG10617-PA
           protein.
          Length = 787

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 16/45 (35%), Positives = 23/45 (51%)

Query: 1   MFYTVKAAAIITLSAYSTVERIVSSHRSPAGLIDGGSAAVLLGLR 45
           M ++V   ++ T     TV  + +S  +P G I  GS AV  GLR
Sbjct: 689 MIFSVPPPSLTTTQLRVTVFGVTTSGVTPLGHIVAGSCAVGKGLR 733


  Database: fruitfly
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 24,830,863
  Number of sequences in database:  52,641
  
Lambda     K      H
   0.319    0.132    0.357 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,432,054
Number of Sequences: 52641
Number of extensions: 63146
Number of successful extensions: 116
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 114
Number of HSP's gapped (non-prelim): 2
length of query: 55
length of database: 24,830,863
effective HSP length: 36
effective length of query: 19
effective length of database: 22,935,787
effective search space: 435779953
effective search space used: 435779953
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 53 (25.4 bits)