GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000831-TA|BGIBMGA000831-PA|undefined
         (55 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF067946-2|AAC17685.1|  223|Caenorhabditis elegans Nudix family ...    25   6.4  

>AF067946-2|AAC17685.1|  223|Caenorhabditis elegans Nudix family
           protein 2 protein.
          Length = 223

 Score = 25.0 bits (52), Expect = 6.4
 Identities = 12/23 (52%), Positives = 13/23 (56%)

Query: 29  PAGLIDGGSAAVLLGLRIRKETT 51
           PAGLID G  A    +R  KE T
Sbjct: 109 PAGLIDAGETAQQAAIRELKEET 131


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.319    0.132    0.357 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,137,610
Number of Sequences: 27539
Number of extensions: 27505
Number of successful extensions: 48
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 47
Number of HSP's gapped (non-prelim): 1
length of query: 55
length of database: 12,573,161
effective HSP length: 36
effective length of query: 19
effective length of database: 11,581,757
effective search space: 220053383
effective search space used: 220053383
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 51 (24.6 bits)