GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000831-TA|BGIBMGA000831-PA|undefined
         (55 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate isome...    21   0.90 
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    21   1.2  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    21   1.2  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    18   8.4  

>EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate
          isomerase protein.
          Length = 247

 Score = 21.4 bits (43), Expect = 0.90
 Identities = 10/30 (33%), Positives = 15/30 (50%)

Query: 14 SAYSTVERIVSSHRSPAGLIDGGSAAVLLG 43
          + Y   +   +   SPA L+D G   V+LG
Sbjct: 64 NTYKVAKGAFTGEISPAMLLDNGIPWVILG 93


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic
          acetylcholine receptor alpha6subunit protein.
          Length = 529

 Score = 21.0 bits (42), Expect = 1.2
 Identities = 8/17 (47%), Positives = 13/17 (76%)

Query: 13 LSAYSTVERIVSSHRSP 29
          LS+Y+T+ER V++   P
Sbjct: 63 LSSYNTLERPVANESEP 79


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic
          acetylcholine receptor alpha6subunit protein.
          Length = 529

 Score = 21.0 bits (42), Expect = 1.2
 Identities = 8/17 (47%), Positives = 13/17 (76%)

Query: 13 LSAYSTVERIVSSHRSP 29
          LS+Y+T+ER V++   P
Sbjct: 63 LSSYNTLERPVANESEP 79


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 18.2 bits (35), Expect = 8.4
 Identities = 8/27 (29%), Positives = 14/27 (51%)

Query: 3   YTVKAAAIITLSAYSTVERIVSSHRSP 29
           Y +    ++TLS   T+  +  + RSP
Sbjct: 302 YLLFTMVLVTLSVVVTIAVLNVNFRSP 328


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.319    0.132    0.357 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,543
Number of Sequences: 429
Number of extensions: 347
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of query: 55
length of database: 140,377
effective HSP length: 35
effective length of query: 20
effective length of database: 125,362
effective search space:  2507240
effective search space used:  2507240
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (19.0 bits)
S2: 35 (18.2 bits)