GeneModel BLAST Result against uniref50

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000830-TA|BGIBMGA000830-PA|undefined
         (140 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q1FNQ7 Cluster: Putative uncharacterized protein precur...    35   0.71 
UniRef50_UPI00004988E1 Cluster: Trp-Asp repeats containing prote...    33   1.6  
UniRef50_Q584V2 Cluster: Nitrate reductase, putative; n=1; Trypa...    33   2.9  
UniRef50_Q2GY37 Cluster: Putative uncharacterized protein; n=1; ...    33   2.9  
UniRef50_A7MYN2 Cluster: Putative uncharacterized protein; n=1; ...    32   3.8  

>UniRef50_Q1FNQ7 Cluster: Putative uncharacterized protein
           precursor; n=1; Clostridium phytofermentans ISDg|Rep:
           Putative uncharacterized protein precursor - Clostridium
           phytofermentans ISDg
          Length = 331

 Score = 34.7 bits (76), Expect = 0.71
 Identities = 20/60 (33%), Positives = 32/60 (53%), Gaps = 2/60 (3%)

Query: 57  FAVIYPRKRLSKPIGVVNLRNTYVDQVETSSGFVIRQKGYDNTISAKFICSKRDVDS-WV 115
           F++ YPR+ L  P G   L N Y+  +E  +G +I   G+ N+  A  +  K  VD+ W+
Sbjct: 52  FSLSYPRETLKIPSGKYML-NGYLYGMENKNGLIILSSGHRNSTEASLLDMKYFVDNGWM 110


>UniRef50_UPI00004988E1 Cluster: Trp-Asp repeats containing protein;
           n=3; Entamoeba histolytica HM-1:IMSS|Rep: Trp-Asp
           repeats containing protein - Entamoeba histolytica
           HM-1:IMSS
          Length = 463

 Score = 33.5 bits (73), Expect = 1.6
 Identities = 15/50 (30%), Positives = 31/50 (62%), Gaps = 1/50 (2%)

Query: 48  IVYRTSLEHFAVIYPRKRLSKPIGVVNLRNTYVDQVETSSGFVIRQKGYD 97
           I+Y +S +    +Y  ++ + PI V+   + +++ + TS+ +V+RQ GYD
Sbjct: 245 ILYTSSRDRMINVYDMRQ-ANPIHVLKGHSHWINGISTSTEYVLRQGGYD 293


>UniRef50_Q584V2 Cluster: Nitrate reductase, putative; n=1;
           Trypanosoma brucei|Rep: Nitrate reductase, putative -
           Trypanosoma brucei
          Length = 394

 Score = 32.7 bits (71), Expect = 2.9
 Identities = 26/87 (29%), Positives = 39/87 (44%), Gaps = 4/87 (4%)

Query: 25  DSEVKSGFL--VLLGPGGMRQDV-RV-IVYRTSLEHFAVIYPRKRLSKPIGVVNLRNTYV 80
           D EV  GF+   +LG   +  DV R+ I +   L+H    Y R +L  P G  ++   Y 
Sbjct: 129 DREVTPGFVRATVLGTEMLLDDVVRITIAFPLGLQHSPGSYVRLKLPHPSGACDMSGNYT 188

Query: 81  DQVETSSGFVIRQKGYDNTISAKFICS 107
               T + F+I  K   N   +  +CS
Sbjct: 189 VASVTETSFMIISKRSLNHGVSSHVCS 215


>UniRef50_Q2GY37 Cluster: Putative uncharacterized protein; n=1;
           Chaetomium globosum|Rep: Putative uncharacterized
           protein - Chaetomium globosum (Soil fungus)
          Length = 381

 Score = 32.7 bits (71), Expect = 2.9
 Identities = 27/96 (28%), Positives = 46/96 (47%), Gaps = 3/96 (3%)

Query: 8   GTCRSENFGQRFTKKYLDSEVKSGFLVLLGPGGMRQ-DVRVIVYRTSLEHFAVIYPRKRL 66
           GT +     +   ++ + +++      +LG  G+++ DV + V  TS    AV+   +RL
Sbjct: 244 GTPQFHQVAEAQARQNMGAKLADKLREVLGEEGIKEIDVIIPVPETSNTAAAVV--SERL 301

Query: 67  SKPIGVVNLRNTYVDQVETSSGFVIRQKGYDNTISA 102
           SKP     ++N YV +     G   RQK    T+SA
Sbjct: 302 SKPFSNGFIKNRYVYRTFILPGQKARQKSVRRTLSA 337


>UniRef50_A7MYN2 Cluster: Putative uncharacterized protein; n=1;
           Vibrio harveyi ATCC BAA-1116|Rep: Putative
           uncharacterized protein - Vibrio harveyi ATCC BAA-1116
          Length = 386

 Score = 32.3 bits (70), Expect = 3.8
 Identities = 30/106 (28%), Positives = 46/106 (43%), Gaps = 11/106 (10%)

Query: 29  KSGFLVLLGPGGMRQDVRVIVYRTSLE-HFAVIYPRKRLSKPIGVVNLRNTYVD--QVET 85
           +SG+ V LGPG     + V V+  S + H   I   KR    I  V ++  Y D  + + 
Sbjct: 276 RSGYEVELGPGTNDDGIDVRVWNDSAQVHPEFIIQCKRYKSKIDKVTVKGLYADVLEAQA 335

Query: 86  SSGFVIR----QKGYDNTISAKFICSK----RDVDSWVAAFTSRGS 123
           ++G ++       G   TISA+    K      V  W+ A  + GS
Sbjct: 336 TTGLLVTTSEFSPGARTTISARSYPIKEVNGEKVSEWLQALRTPGS 381


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.321    0.135    0.398 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 153,761,630
Number of Sequences: 1657284
Number of extensions: 5624931
Number of successful extensions: 9697
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 9697
Number of HSP's gapped (non-prelim): 5
length of query: 140
length of database: 575,637,011
effective HSP length: 93
effective length of query: 47
effective length of database: 421,509,599
effective search space: 19810951153
effective search space used: 19810951153
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 67 (31.1 bits)