GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000830-TA|BGIBMGA000830-PA|undefined
         (140 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPACUNK4.15 |||2',3'-cyclic-nucleotide 3'-phosphodiesterase |Sch...    29   0.27 
SPAC12G12.11c |||DUF544 family protein|Schizosaccharomyces pombe...    29   0.35 
SPBC577.13 |syj2||inositol-polyphosphate 5-phosphatase |Schizosa...    25   3.3  
SPAC19A8.05c |vps27|sst4|sorting receptor for ubiquitinated memb...    25   4.4  
SPBC3B9.10 |vti1||SNARE Vti1|Schizosaccharomyces pombe|chr 2|||M...    25   4.4  
SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||...    25   5.8  
SPBC8D2.12c |||mitochondrial DNA binding protein |Schizosaccharo...    24   7.6  

>SPACUNK4.15 |||2',3'-cyclic-nucleotide 3'-phosphodiesterase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 208

 Score = 29.1 bits (62), Expect = 0.27
 Identities = 17/58 (29%), Positives = 26/58 (44%)

Query: 65  RLSKPIGVVNLRNTYVDQVETSSGFVIRQKGYDNTISAKFICSKRDVDSWVAAFTSRG 122
           ++ K  G+  L+N   D  +TS  F + +  Y   I AK ICS       +   +S G
Sbjct: 119 QVEKTPGLEELQNAAYDLADTSDPFNVIEHPYMPVIYAKSICSDYSTSDPIETISSIG 176


>SPAC12G12.11c |||DUF544 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 365

 Score = 28.7 bits (61), Expect = 0.35
 Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 7/57 (12%)

Query: 5   LMTGTCRSENFGQRFTKKYLDSEVKSGFLVLLGPGGMRQDVRVIVYRTSLEHFAVIY 61
           L   TC  +    R+T ++L +      L L+GPG +     V+V+R+S  HF+ +Y
Sbjct: 202 LNNSTCVDKVMENRYTMQFLTNAGLKKILELVGPGEI-----VVVFRSS--HFSTMY 251


>SPBC577.13 |syj2||inositol-polyphosphate 5-phosphatase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 889

 Score = 25.4 bits (53), Expect = 3.3
 Identities = 10/26 (38%), Positives = 18/26 (69%)

Query: 12  SENFGQRFTKKYLDSEVKSGFLVLLG 37
           S++FG+ +  +Y D E ++  L+LLG
Sbjct: 508 SKSFGRMYVGRYPDVESQNAILLLLG 533


>SPAC19A8.05c |vps27|sst4|sorting receptor for ubiquitinated
           membrane proteins, ESCRT 0 complex|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 610

 Score = 25.0 bits (52), Expect = 4.4
 Identities = 15/58 (25%), Positives = 30/58 (51%), Gaps = 3/58 (5%)

Query: 6   MTGTCRSENFGQRFTKKYLDSEVKSGFL-VLLGPGGMRQDVRVIVYRTSLEHFAVIYP 62
           +T TC  +N G  F  +    E     + +L  P G+ +DV++++ R  ++ +A+  P
Sbjct: 72  LTDTC-VKNGGSGFLLEIASREFMDNLVSILRSPAGIDEDVKMVILR-YIQSWALAVP 127


>SPBC3B9.10 |vti1||SNARE Vti1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 214

 Score = 25.0 bits (52), Expect = 4.4
 Identities = 14/52 (26%), Positives = 28/52 (53%), Gaps = 5/52 (9%)

Query: 46  RVIVYRTSLEHFAVIYPRKRLSKPIGVVNLRNTYVDQVETSSGFVIRQKGYD 97
           R+  YR++LE +     R+ L + IG  + +  + ++ ETS  ++   + YD
Sbjct: 66  RIRSYRSTLEEW-----RRHLKEEIGKSDRKALFGNRDETSGDYIASDQDYD 112


>SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1096

 Score = 24.6 bits (51), Expect = 5.8
 Identities = 16/64 (25%), Positives = 30/64 (46%), Gaps = 2/64 (3%)

Query: 73  VNLRNTYVDQVETSSGFVIRQKGY--DNTISAKFICSKRDVDSWVAAFTSRGSPQCLHAS 130
           ++L+   VD +  SS  ++ +     ++  + KF      +DSW+ A  +  SP  +HA 
Sbjct: 285 LDLKTCPVDGILFSSSCLLDESMVTGESVPARKFPLEDNSLDSWMIASCNIFSPHLIHAG 344

Query: 131 LPVL 134
              L
Sbjct: 345 TKFL 348


>SPBC8D2.12c |||mitochondrial DNA binding protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 293

 Score = 24.2 bits (50), Expect = 7.6
 Identities = 9/23 (39%), Positives = 14/23 (60%)

Query: 21  KKYLDSEVKSGFLVLLGPGGMRQ 43
           K+Y+D E +  FL+L  P  + Q
Sbjct: 201 KEYIDEEDEGEFLILTEPSSLNQ 223


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.321    0.135    0.398 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 620,208
Number of Sequences: 5004
Number of extensions: 23153
Number of successful extensions: 35
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 32
Number of HSP's gapped (non-prelim): 7
length of query: 140
length of database: 2,362,478
effective HSP length: 66
effective length of query: 74
effective length of database: 2,032,214
effective search space: 150383836
effective search space used: 150383836
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 50 (24.2 bits)