GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000830-TA|BGIBMGA000830-PA|undefined
         (140 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_56995| Best HMM Match : TFIIB (HMM E-Value=0.0059)                  32   0.15 
SB_47960| Best HMM Match : Extensin_2 (HMM E-Value=0.54)               31   0.47 
SB_48713| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   2.5  
SB_27495| Best HMM Match : VWA (HMM E-Value=0)                         28   2.5  
SB_21129| Best HMM Match : Pkinase (HMM E-Value=2.5e-07)               28   3.3  
SB_48164| Best HMM Match : DUF1168 (HMM E-Value=0.19)                  28   3.3  
SB_15351| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.4  
SB_13875| Best HMM Match : rve (HMM E-Value=4.5e-15)                   27   4.4  
SB_22024| Best HMM Match : Tymo_45kd_70kd (HMM E-Value=1.2)            27   5.8  
SB_56415| Best HMM Match : Extensin_2 (HMM E-Value=0.99)               27   7.6  
SB_15235| Best HMM Match : DUF1421 (HMM E-Value=1.5)                   27   7.6  

>SB_56995| Best HMM Match : TFIIB (HMM E-Value=0.0059)
          Length = 657

 Score = 32.3 bits (70), Expect = 0.15
 Identities = 32/119 (26%), Positives = 52/119 (43%), Gaps = 7/119 (5%)

Query: 22  KYLDSEVKSGFLVLLGPGGMRQDVRVIVYRTSLEHFAVIYPRKRLSKPIGVVNLRNTYVD 81
           +YLDSE++       G  G  + VR+     +   F       R  + IGV+ + N Y D
Sbjct: 529 EYLDSEMERA-----GKYGDVRAVRMCCELGACSFFEPATEAARYGR-IGVLEVMNDYCD 582

Query: 82  QVETSSGFVIRQKGYDNTISAKFICSKRDVDSWVAAFTSRGSPQCLHASLPVLVEAEES 140
            V      +I   G+D    AK++  +R V  +V A+T        +  L +L E+ E+
Sbjct: 583 DVYVWEEAMIEAAGWDQVGVAKWLI-ERGVGDYVGAYTIEAVSNGCYRFLRLLRESFEN 640


>SB_47960| Best HMM Match : Extensin_2 (HMM E-Value=0.54)
          Length = 710

 Score = 30.7 bits (66), Expect = 0.47
 Identities = 28/98 (28%), Positives = 45/98 (45%), Gaps = 8/98 (8%)

Query: 25  DSEVKSGFLVLLGPGGMRQDVRVIVYRTSLEHFAVIYPRKRLSKPIGVVN--LRNTYVDQ 82
           D ++   F   L PGG R  V  +VY ++L  F V+Y    LS+ + V +  L    V  
Sbjct: 340 DEDLTCRFYAQLIPGGKRSFV--VVYSSTLSRFVVVY-TSTLSRFVVVYSSTLSRFVVVY 396

Query: 83  VETSSGFVIRQKGYDNTISAKFICSKRDVDSWVAAFTS 120
             T S FV+    Y +T+S   +     +  +V  ++S
Sbjct: 397 TSTLSRFVV---VYSSTLSRFVVVYTSTLSRFVVVYSS 431


>SB_48713| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 663

 Score = 28.3 bits (60), Expect = 2.5
 Identities = 18/42 (42%), Positives = 26/42 (61%), Gaps = 6/42 (14%)

Query: 83  VETSSGF--VIRQKGYDNTISAKFICS--KRDVDSWVAAFTS 120
           V+TS GF  V++ +G  N I  +F+C+  K D+  WVAA  S
Sbjct: 331 VDTSCGFTVVVKAEGSGNII--RFLCAKDKDDMYRWVAAILS 370


>SB_27495| Best HMM Match : VWA (HMM E-Value=0)
          Length = 1064

 Score = 28.3 bits (60), Expect = 2.5
 Identities = 16/61 (26%), Positives = 29/61 (47%)

Query: 10  CRSENFGQRFTKKYLDSEVKSGFLVLLGPGGMRQDVRVIVYRTSLEHFAVIYPRKRLSKP 69
           C  +  G+   K  + S+    FL   G    R  +R  V R + + + ++ PRKRL++ 
Sbjct: 539 CCDDGSGKTSCKTAIKSKYAYDFLRRDGKPWSRDRLRFAVIRKARKTWIIVIPRKRLTQA 598

Query: 70  I 70
           +
Sbjct: 599 V 599


>SB_21129| Best HMM Match : Pkinase (HMM E-Value=2.5e-07)
          Length = 786

 Score = 27.9 bits (59), Expect = 3.3
 Identities = 28/104 (26%), Positives = 43/104 (41%), Gaps = 2/104 (1%)

Query: 24  LDSEVKSGFLVLLGPGGMRQDVRVIVYRTSLEHFAVIYPRKRLSKPIGVVNLRNTYVDQV 83
           LDS   +   +  G    +QD R  V  +S E  + I+PR     P   V  R +     
Sbjct: 118 LDSGTGTMATISTGHAPFQQDNRHAVKSSSAERTSDIWPRDPKHPPSPPVRQRPSSCPST 177

Query: 84  E-TSSGFVIRQKGYDNTISAKFICSK-RDVDSWVAAFTSRGSPQ 125
           E  ++G     +G D    A++   K R  DSW++   S   P+
Sbjct: 178 ENVTTGSSSHVRGSDVAQPAQYSGLKTRTSDSWLSDIHSSKIPK 221


>SB_48164| Best HMM Match : DUF1168 (HMM E-Value=0.19)
          Length = 1883

 Score = 27.9 bits (59), Expect = 3.3
 Identities = 17/47 (36%), Positives = 24/47 (51%)

Query: 94   KGYDNTISAKFICSKRDVDSWVAAFTSRGSPQCLHASLPVLVEAEES 140
            +  D T S+K I SKR  DS  +A+T R   + L  S  ++   E S
Sbjct: 1753 RNIDRTSSSKSISSKRSSDSGPSAYTLRVVRENLRTSSLLVTPPERS 1799



 Score = 26.6 bits (56), Expect = 7.6
 Identities = 17/47 (36%), Positives = 23/47 (48%)

Query: 94  KGYDNTISAKFICSKRDVDSWVAAFTSRGSPQCLHASLPVLVEAEES 140
           +  D T S+K I SKR  DS  +A+T R   + L  S   +   E S
Sbjct: 899 RNIDRTSSSKSISSKRSSDSGPSAYTLRVVRENLRTSSLSVTPPERS 945


>SB_15351| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 800

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 23/55 (41%), Positives = 32/55 (58%), Gaps = 6/55 (10%)

Query: 43  QDVRVIVYRTS---LEHF-AVIYPRKRLS-KPIGVVNLRNTYVDQVETSSGFVIR 92
           QDV V+VYR+S   LE   AV+Y    L  + IGVV  R++++  +E   G V R
Sbjct: 69  QDVGVVVYRSSPLGLEDIGAVVYRSSPLGLEDIGVVVYRSSHLG-LEDMGGVVYR 122


>SB_13875| Best HMM Match : rve (HMM E-Value=4.5e-15)
          Length = 1216

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 15/55 (27%), Positives = 28/55 (50%), Gaps = 6/55 (10%)

Query: 15  FGQRFTKKYLDSEVKSGFLVLLGPGGMRQDVRVIVYRTSLEHFAVIYPRKRLSKP 69
           F  + T++Y+D E++    +   P        V+ Y  + E +A++Y +KRL  P
Sbjct: 241 FTHKETRRYVDMELRCRNCIRRAPAD------VVTYDDAQEVWAILYGKKRLGGP 289


>SB_22024| Best HMM Match : Tymo_45kd_70kd (HMM E-Value=1.2)
          Length = 953

 Score = 27.1 bits (57), Expect = 5.8
 Identities = 17/47 (36%), Positives = 23/47 (48%)

Query: 94  KGYDNTISAKFICSKRDVDSWVAAFTSRGSPQCLHASLPVLVEAEES 140
           +  D T S+K I SKR  DS  +A+T R   + L  S   +   E S
Sbjct: 823 RNIDRTSSSKSISSKRSSDSGPSAYTLRVRRENLRTSSLSVTPPERS 869


>SB_56415| Best HMM Match : Extensin_2 (HMM E-Value=0.99)
          Length = 412

 Score = 26.6 bits (56), Expect = 7.6
 Identities = 22/76 (28%), Positives = 36/76 (47%), Gaps = 6/76 (7%)

Query: 47  VIVYRTSLEHFAVIYPRKRLSKPIGVVN--LRNTYVDQVETSSGFVIRQKGYDNTISAKF 104
           V+VY ++L  F V+Y    LS+ + V +  L    V    T S FV+    Y +T+S   
Sbjct: 278 VVVYSSTLSRFVVVY-SSTLSRFVVVYSSTLSRFVVVYTSTLSRFVV---VYSSTLSRFV 333

Query: 105 ICSKRDVDSWVAAFTS 120
           +     +  +V  +TS
Sbjct: 334 VVYSSTLSRFVVVYTS 349


>SB_15235| Best HMM Match : DUF1421 (HMM E-Value=1.5)
          Length = 754

 Score = 26.6 bits (56), Expect = 7.6
 Identities = 17/47 (36%), Positives = 23/47 (48%)

Query: 94  KGYDNTISAKFICSKRDVDSWVAAFTSRGSPQCLHASLPVLVEAEES 140
           +  D T S+K I SKR  DS  +A+T R   + L  S   +   E S
Sbjct: 624 RNIDRTSSSKSISSKRSSDSGPSAYTLRVVRENLRTSSLSVTPPERS 670


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.321    0.135    0.398 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,588,914
Number of Sequences: 59808
Number of extensions: 168664
Number of successful extensions: 345
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 302
Number of HSP's gapped (non-prelim): 63
length of query: 140
length of database: 16,821,457
effective HSP length: 75
effective length of query: 65
effective length of database: 12,335,857
effective search space: 801830705
effective search space used: 801830705
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 56 (26.6 bits)