GeneModel BLAST Result against human

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000830-TA|BGIBMGA000830-PA|undefined
         (140 letters)

Database: human 
           224,733 sequences; 73,234,838 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC117220-1|AAI17221.1|  628|Homo sapiens sorting nexin associate...    29   7.3  
BC117218-1|AAI17219.1|  628|Homo sapiens sorting nexin associate...    29   7.3  
BC067860-1|AAH67860.1|  624|Homo sapiens SNAG1 protein protein.        29   7.3  
BC060791-1|AAH60791.1|  624|Homo sapiens SNAG1 protein protein.        29   7.3  
AF395536-1|AAK82415.1|  628|Homo sapiens sorting nexin 18 protein.     29   7.3  

>BC117220-1|AAI17221.1|  628|Homo sapiens sorting nexin associated
           golgi protein 1 protein.
          Length = 628

 Score = 28.7 bits (61), Expect = 7.3
 Identities = 11/35 (31%), Positives = 19/35 (54%)

Query: 105 ICSKRDVDSWVAAFTSRGSPQCLHASLPVLVEAEE 139
           +CS++D++ W+    SRG      AS   ++ A E
Sbjct: 29  LCSEQDIEGWLEGVNSRGDRGLFPASYVQVIRAPE 63


>BC117218-1|AAI17219.1|  628|Homo sapiens sorting nexin associated
           golgi protein 1 protein.
          Length = 628

 Score = 28.7 bits (61), Expect = 7.3
 Identities = 11/35 (31%), Positives = 19/35 (54%)

Query: 105 ICSKRDVDSWVAAFTSRGSPQCLHASLPVLVEAEE 139
           +CS++D++ W+    SRG      AS   ++ A E
Sbjct: 29  LCSEQDIEGWLEGVNSRGDRGLFPASYVQVIRAPE 63


>BC067860-1|AAH67860.1|  624|Homo sapiens SNAG1 protein protein.
          Length = 624

 Score = 28.7 bits (61), Expect = 7.3
 Identities = 11/35 (31%), Positives = 19/35 (54%)

Query: 105 ICSKRDVDSWVAAFTSRGSPQCLHASLPVLVEAEE 139
           +CS++D++ W+    SRG      AS   ++ A E
Sbjct: 29  LCSEQDIEGWLEGVNSRGDRGLFPASYVQVIRAPE 63


>BC060791-1|AAH60791.1|  624|Homo sapiens SNAG1 protein protein.
          Length = 624

 Score = 28.7 bits (61), Expect = 7.3
 Identities = 11/35 (31%), Positives = 19/35 (54%)

Query: 105 ICSKRDVDSWVAAFTSRGSPQCLHASLPVLVEAEE 139
           +CS++D++ W+    SRG      AS   ++ A E
Sbjct: 29  LCSEQDIEGWLEGVNSRGDRGLFPASYVQVIRAPE 63


>AF395536-1|AAK82415.1|  628|Homo sapiens sorting nexin 18 protein.
          Length = 628

 Score = 28.7 bits (61), Expect = 7.3
 Identities = 11/35 (31%), Positives = 19/35 (54%)

Query: 105 ICSKRDVDSWVAAFTSRGSPQCLHASLPVLVEAEE 139
           +CS++D++ W+    SRG      AS   ++ A E
Sbjct: 29  LCSEQDIEGWLEGVNSRGDRGLFPASYVQVIRAPE 63


  Database: human
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 73,234,838
  Number of sequences in database:  224,733
  
Lambda     K      H
   0.321    0.135    0.398 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,606,735
Number of Sequences: 224733
Number of extensions: 718126
Number of successful extensions: 1060
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1055
Number of HSP's gapped (non-prelim): 5
length of query: 140
length of database: 73,234,838
effective HSP length: 83
effective length of query: 57
effective length of database: 54,581,999
effective search space: 3111173943
effective search space used: 3111173943
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 60 (28.3 bits)