GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000830-TA|BGIBMGA000830-PA|undefined
         (140 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41007-17|AAA82261.1|  507|Caenorhabditis elegans Hypothetical p...    29   1.2  
U23520-5|AAC46554.4|  975|Caenorhabditis elegans Mammalian vav (...    29   1.2  
U23520-4|ABB88236.1| 1007|Caenorhabditis elegans Mammalian vav (...    29   1.2  
DQ136172-1|AAZ66767.1| 1007|Caenorhabditis elegans VAV-1 protein.      29   1.2  
Z81543-2|CAB04424.1|  309|Caenorhabditis elegans Hypothetical pr...    28   2.8  

>U41007-17|AAA82261.1|  507|Caenorhabditis elegans Hypothetical
           protein C33H5.2 protein.
          Length = 507

 Score = 29.1 bits (62), Expect = 1.2
 Identities = 19/58 (32%), Positives = 31/58 (53%), Gaps = 3/58 (5%)

Query: 77  NTYVDQVETSSGFVIRQKGYDNTISAKFICSK--RDVDSWVAAFTSRGSPQCLHASLP 132
           N   D+V+T +G +I    YDN+ SA  I SK  +D++  +    ++   + L A LP
Sbjct: 369 NWVEDEVKTGNGTIIEPMYYDNS-SATIISSKDIKDIEDDLQRMRNKPEIKKLFAELP 425


>U23520-5|AAC46554.4|  975|Caenorhabditis elegans Mammalian vav
           (oncogene) relatedprotein 1, isoform a protein.
          Length = 975

 Score = 29.1 bits (62), Expect = 1.2
 Identities = 18/61 (29%), Positives = 31/61 (50%)

Query: 64  KRLSKPIGVVNLRNTYVDQVETSSGFVIRQKGYDNTISAKFICSKRDVDSWVAAFTSRGS 123
           + LS P G  + RN+    +  S   V RQ+ Y NT  ++F+    +++   A  T +G+
Sbjct: 757 RSLSGPHGSRSSRNSSSSTINGSMDSVPRQQDYVNTEISEFLWYMGEMERAKAESTLKGT 816

Query: 124 P 124
           P
Sbjct: 817 P 817


>U23520-4|ABB88236.1| 1007|Caenorhabditis elegans Mammalian vav
           (oncogene) relatedprotein 1, isoform b protein.
          Length = 1007

 Score = 29.1 bits (62), Expect = 1.2
 Identities = 18/61 (29%), Positives = 31/61 (50%)

Query: 64  KRLSKPIGVVNLRNTYVDQVETSSGFVIRQKGYDNTISAKFICSKRDVDSWVAAFTSRGS 123
           + LS P G  + RN+    +  S   V RQ+ Y NT  ++F+    +++   A  T +G+
Sbjct: 789 RSLSGPHGSRSSRNSSSSTINGSMDSVPRQQDYVNTEISEFLWYMGEMERAKAESTLKGT 848

Query: 124 P 124
           P
Sbjct: 849 P 849


>DQ136172-1|AAZ66767.1| 1007|Caenorhabditis elegans VAV-1 protein.
          Length = 1007

 Score = 29.1 bits (62), Expect = 1.2
 Identities = 18/61 (29%), Positives = 31/61 (50%)

Query: 64  KRLSKPIGVVNLRNTYVDQVETSSGFVIRQKGYDNTISAKFICSKRDVDSWVAAFTSRGS 123
           + LS P G  + RN+    +  S   V RQ+ Y NT  ++F+    +++   A  T +G+
Sbjct: 789 RSLSGPHGSRSSRNSSSSTINGSMDSVPRQQDYVNTEISEFLWYMGEMERAKAESTLKGT 848

Query: 124 P 124
           P
Sbjct: 849 P 849


>Z81543-2|CAB04424.1|  309|Caenorhabditis elegans Hypothetical
           protein F49B2.2 protein.
          Length = 309

 Score = 27.9 bits (59), Expect = 2.8
 Identities = 12/47 (25%), Positives = 28/47 (59%), Gaps = 4/47 (8%)

Query: 41  MRQDVRVIVYRTSLEHFAVIYPRKRLSKPIGVVNLRNTYVDQVETSS 87
           MR+ VR + ++  +EHF V++ R ++ +    ++LR   +D  + ++
Sbjct: 103 MRRTVRWVGHKALIEHFIVLFHRSKIDR----ISLRRAVLDSEQLAN 145


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.321    0.135    0.398 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,396,478
Number of Sequences: 27539
Number of extensions: 125157
Number of successful extensions: 197
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 193
Number of HSP's gapped (non-prelim): 5
length of query: 140
length of database: 12,573,161
effective HSP length: 75
effective length of query: 65
effective length of database: 10,507,736
effective search space: 683002840
effective search space used: 683002840
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 55 (26.2 bits)