GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000830-TA|BGIBMGA000830-PA|undefined
         (140 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle pr...    23   0.92 
U15956-1|AAA67444.1|  129|Apis mellifera hymenoptaecin precursor...    22   2.8  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    21   3.7  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     21   3.7  

>EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle
           protein protein.
          Length = 138

 Score = 23.4 bits (48), Expect = 0.92
 Identities = 11/44 (25%), Positives = 20/44 (45%)

Query: 73  VNLRNTYVDQVETSSGFVIRQKGYDNTISAKFICSKRDVDSWVA 116
           VN    Y++  ETS+G   ++ G    +  +     +  DS+ A
Sbjct: 36  VNFDGNYINNFETSNGISHQESGQPKQVDNETPVVSQGSDSYTA 79


>U15956-1|AAA67444.1|  129|Apis mellifera hymenoptaecin precursor
           protein.
          Length = 129

 Score = 21.8 bits (44), Expect = 2.8
 Identities = 11/37 (29%), Positives = 18/37 (48%)

Query: 4   DLMTGTCRSENFGQRFTKKYLDSEVKSGFLVLLGPGG 40
           ++  G    ++ G  F K+Y +  +K    V  GPGG
Sbjct: 79  NIRPGQPSRQHAGFEFGKEYKNGFIKGQSEVQRGPGG 115


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 21.4 bits (43), Expect = 3.7
 Identities = 7/16 (43%), Positives = 12/16 (75%)

Query: 41  MRQDVRVIVYRTSLEH 56
           +R+++RV  +RT  EH
Sbjct: 159 IREEIRVDPFRTGFEH 174


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 21.4 bits (43), Expect = 3.7
 Identities = 7/16 (43%), Positives = 12/16 (75%)

Query: 41  MRQDVRVIVYRTSLEH 56
           +R+++RV  +RT  EH
Sbjct: 159 IREEIRVDPFRTGFEH 174


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.321    0.135    0.398 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 39,063
Number of Sequences: 429
Number of extensions: 1460
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of query: 140
length of database: 140,377
effective HSP length: 52
effective length of query: 88
effective length of database: 118,069
effective search space: 10390072
effective search space used: 10390072
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.4 bits)
S2: 40 (20.2 bits)