GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000830-TA|BGIBMGA000830-PA|undefined
         (140 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g05660.1 68416.m00630 disease resistance family protein conta...    27   3.6  
At3g25680.1 68416.m03196 expressed protein                             27   6.2  
At4g21760.1 68417.m03149 glycosyl hydrolase family 1 protein con...    26   8.2  

>At3g05660.1 68416.m00630 disease resistance family protein contains
           leucine rich-repeat (LRR) domains Pfam:PF00560,
           INTERPRO:IPR001611; similar to Cf-2.2 [Lycopersicon
           pimpinellifolium] gi|1184077|gb|AAC15780
          Length = 883

 Score = 27.5 bits (58), Expect = 3.6
 Identities = 25/88 (28%), Positives = 40/88 (45%), Gaps = 6/88 (6%)

Query: 7   TGTCRSENFGQRFTKKYLDSEVKSGFLVLLGPGGMRQDVRVIVYRTSLE----HFAVIYP 62
           TG    E    RF +KY+ S      +VL+  G   + VR++   T+L+     F    P
Sbjct: 645 TGMHSLEKNEDRFNEKYMGSGYYHDSMVLMNKGLEMELVRILKIYTALDFSGNKFEGEIP 704

Query: 63  RK-RLSKPIGVVNL-RNTYVDQVETSSG 88
           R   L K + ++NL  N +   + +S G
Sbjct: 705 RSIGLLKELHILNLSSNGFTGHIPSSMG 732


>At3g25680.1 68416.m03196 expressed protein
          Length = 558

 Score = 26.6 bits (56), Expect = 6.2
 Identities = 16/62 (25%), Positives = 30/62 (48%), Gaps = 1/62 (1%)

Query: 80  VDQVETSSGFVIRQ-KGYDNTISAKFICSKRDVDSWVAAFTSRGSPQCLHASLPVLVEAE 138
           VD  +  +  V+++ K Y++ I A  +C+KR+   W+    S      +H  +P +  A 
Sbjct: 178 VDAAQQEAIAVLKKLKIYEDDIVADELCTKREYARWLVRSNSLLERNPMHMIVPAVALAG 237

Query: 139 ES 140
            S
Sbjct: 238 SS 239


>At4g21760.1 68417.m03149 glycosyl hydrolase family 1 protein
           contains Pfam PF00232 : Glycosyl hydrolase family 1
           domain; TIGRFAM TIGR01233: 6-phospho-beta-galactosidase;
           similar to dalcochinin 8'-O-beta-glucoside
           beta-glucosidase precursor (GI:6118076) [Dalbergia
           cochinchinensis]
          Length = 535

 Score = 26.2 bits (55), Expect = 8.2
 Identities = 11/44 (25%), Positives = 20/44 (45%)

Query: 61  YPRKRLSKPIGVVNLRNTYVDQVETSSGFVIRQKGYDNTISAKF 104
           YP  R SKP G  +  ++Y++ +  +   ++      N    KF
Sbjct: 235 YPPSRCSKPFGNCSCGDSYIEPLVAAHNIILSHLAAVNLYRTKF 278


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.321    0.135    0.398 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,262,779
Number of Sequences: 28952
Number of extensions: 121653
Number of successful extensions: 215
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 214
Number of HSP's gapped (non-prelim): 3
length of query: 140
length of database: 12,070,560
effective HSP length: 74
effective length of query: 66
effective length of database: 9,928,112
effective search space: 655255392
effective search space used: 655255392
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 55 (26.2 bits)