Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000829-TA|BGIBMGA000829-PA|IPR004871|CPSF A subunit,
C-terminal, IPR011046|WD40-like, IPR003006|Immunoglobulin/major
histocompatibility complex
(1218 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g55220.1 68416.m06133 splicing factor, putative contains CPSF... 1390 0.0
At3g55200.1 68416.m06131 splicing factor, putative contains CPSF... 1390 0.0
At4g21100.1 68417.m03051 UV-damaged DNA-binding protein, putativ... 156 7e-38
At4g05420.1 68417.m00824 UV-damaged DNA-binding protein, putativ... 154 4e-37
At3g11960.2 68416.m01476 cleavage and polyadenylation specificit... 82 2e-15
At3g11960.1 68416.m01475 cleavage and polyadenylation specificit... 82 2e-15
At5g51660.1 68418.m06405 cleavage and polyadenylation specificit... 48 3e-05
At5g57590.1 68418.m07195 aminotransferase class III family prote... 32 2.7
At1g78850.1 68414.m09191 curculin-like (mannose-binding) lectin ... 31 6.3
>At3g55220.1 68416.m06133 splicing factor, putative contains CPSF A
subunit region (PF03178); contains weak WD-40 repeat
(PF00400); similar to Splicing factor 3B subunit 3
(SF3b130)/spliceosomal protein/Splicing factor 3B subunit
3 (SAP 130)(KIAA0017)(SP:Q15393) Homo sapiens,
EMBL:HSAJ1443_1
Length = 1214
Score = 1390 bits (3445), Expect = 0.0
Identities = 674/1224 (55%), Positives = 883/1224 (72%), Gaps = 21/1224 (1%)
Query: 1 MYLYNLTLQGSSAITHAVHGNFSGTKQQEIIISRGKTLELLRPDPNTGKVHTFMKIEIFG 60
MYLY+LTLQ ++ I A++GNFSG K QEI ++RGK L+LLRPD N GK+ T +E+FG
Sbjct: 1 MYLYSLTLQQATGIVCAINGNFSGGKTQEIAVARGKILDLLRPDEN-GKIQTIHSVEVFG 59
Query: 61 VVRSIMAFRLTGGTKDYIVVGSDSGRIIILEYIPTKNILEKVHQETFGKSGCRRIVPGQY 120
+RS+ FRLTG KDYIVVGSDSGRI+ILEY KN+ +KVHQETFGKSGCRRIVPGQY
Sbjct: 60 AIRSLAQFRLTGAQKDYIVVGSDSGRIVILEYNKEKNVFDKVHQETFGKSGCRRIVPGQY 119
Query: 121 LSIDPKGRAVMIGAIEKQKLVYILNRDAEARLTISSPLEAHKSNTLVYHMVGVDVGFENP 180
+++DPKGRAVMIGA EKQKLVY+LNRD ARLTISSPLEAHKS+T+ Y + GVD GF+NP
Sbjct: 120 VAVDPKGRAVMIGACEKQKLVYVLNRDTTARLTISSPLEAHKSHTICYSLCGVDCGFDNP 179
Query: 181 MFACLEIDYEEADSDPTGEAAQKTQQTLTFYELDLGLNHVVRKYSEPLEEHANFLITVPG 240
+FA +E+DY EAD DPTG+AA + Q+ LTFYELDLGLNHV RK+S P++ AN L+TVPG
Sbjct: 180 IFAAIELDYSEADQDPTGQAASEAQKHLTFYELDLGLNHVSRKWSNPVDNGANMLVTVPG 239
Query: 241 GNDGPSGVLICSENYLTYKNLGDQHDIRCPIPRRRNDLDDPERGMIFVCSATHKTKSMFF 300
G DGPSGVL+C+EN++ Y N G D+R IPRR DL ERG++ V +A HK K+MFF
Sbjct: 240 GADGPSGVLVCAENFVIYMNQGHP-DVRAVIPRR-TDLP-AERGVLVVSAAVHKQKTMFF 296
Query: 301 FLAQTEQGDIFKITIETDEDMVTEIKLKYFDTVPVATSMCVLKTGFLFVACEFGNHYLYQ 360
FL QTE GD+FK+T++ + D V+E+K+KYFDT+PVA+S+CVLK GFLF A EFGNH LYQ
Sbjct: 297 FLIQTEYGDVFKVTLDHNGDHVSELKVKYFDTIPVASSICVLKLGFLFSASEFGNHGLYQ 356
Query: 361 IAHLGDEDD-EPEFSSAMPLEEG-DTFFFAPRPLRNLVLVDEMDSLSPILACHVADLAGE 418
+G+E D E S+ M EEG FF PR L+NLV +D+++SL P++ V ++ E
Sbjct: 357 FQAIGEEPDVESSSSNLMETEEGFQPVFFQPRRLKNLVRIDQVESLMPLMDMKVLNIFEE 416
Query: 419 DTPQVYLACGRGPRSSLRALRHGLEVAEMAVSELPGSPNAVWTVRRNKDEEYDSYIIVSF 478
+TPQ++ CGRGPRSSLR LR GL + EMAVS+LPG P+AVWTV++N +E+D+YI+VSF
Sbjct: 417 ETPQIFSLCGRGPRSSLRILRPGLAITEMAVSQLPGQPSAVWTVKKNVSDEFDAYIVVSF 476
Query: 479 VNATLVLSIGETVEEVTDSGFLGTTPTLSCHAMGNDALVQVYPDGIRHIRADKRVNEWKA 538
NATLVLSIGE VEEV DSGFL TTP+L+ +G+D+L+QV+P+GIRHIR D R+NEW+
Sbjct: 477 TNATLVLSIGEQVEEVNDSGFLDTTPSLAVSLIGDDSLMQVHPNGIRHIREDGRINEWRT 536
Query: 539 PGKKSIVRCAVNQRQVVIALTGGELVYFEMDPTGQLNEYTERKKLSSDVCCMALGSVAAG 598
PGK+SIV+ N+ QVVIAL+GGEL+YFE D TGQL E E+ ++S DV C+ + V G
Sbjct: 537 PGKRSIVKVGYNRLQVVIALSGGELIYFEADMTGQLME-VEKHEMSGDVACLDIAPVPEG 595
Query: 599 EQRAWFLAVGLNDNTVRIISLDPADCLSPRSMQALPAGAESLCIIEQPFESGAKSA---- 654
+R+ FLAVG DNTVRI+SLDP DCL S+Q++ + ESL +E G
Sbjct: 596 RKRSRFLAVGSYDNTVRILSLDPDDCLQILSVQSVSSAPESLLFLEVQASIGGDDGADHP 655
Query: 655 --LHLNIGLSNGVLLRTTLDSVSGDLADTRTRYLGSRPVKLFKVRVQAAEAVLAVSSRTW 712
L LN GL NGVL RT +D V+G L+D+R+R+LG +P KLF + V+ A+L +SSR W
Sbjct: 656 ANLFLNSGLQNGVLFRTVVDMVTGQLSDSRSRFLGLKPPKLFSISVRGRSAMLCLSSRPW 715
Query: 713 LGYHYQNRFHLTPLSYECLEYAAGFSSEQCTEGIVAISSNTLRILALEKLGAVFNQTFVP 772
LGY ++ FHLTPLSYE LE+AA FSS+QC EG+V+++ + LRI +++LG FN+T VP
Sbjct: 716 LGYIHRGHFHLTPLSYETLEFAAPFSSDQCAEGVVSVAGDALRIFMIDRLGETFNETVVP 775
Query: 773 LEYTPRKFIINSDNNHIIVLETDHNAYTEEMKKHRRIQMAQEMREXXXXXXPEEQQLANE 832
L YTPRKF+++ ++++E+D A+T E ++ R + E Q+ N
Sbjct: 776 LRYTPRKFVLHPKRKLLVIIESDQGAFTAEEREAARKECF-EAGGVGENGNGNADQMENG 834
Query: 833 MADAFLSDTLPEYIFSSPKAGAGMWASLIRVVDMGIGGGQPNTLFRLPLEQNEAAVSLCI 892
D D L + + PKA + W S IRV+D T L L+ NEAA S+C
Sbjct: 835 ADDEDKEDPLSDEQYGYPKAESEKWVSCIRVLDPKTA----TTTCLLELQDNEAAYSVCT 890
Query: 893 VRWAAHAEHAQPHLVVGVAKDLILSPR-SCTEGSLHVYKIYGNTGKLELVHKTPVDEYPG 951
V + H + L VG K + P+ + G +H+Y+ + LEL+HKT V+ P
Sbjct: 891 VNF--HDKEYGTLLAVGTVKGMQFWPKKNLVAGFIHIYRFVEDGKSLELLHKTQVEGVPL 948
Query: 952 AIAAFNGRLLAGVGRMLRLYDIGRRKLLRKCENRHIPNLIADIKTIGQRIFVSDVQESVF 1011
A+ F GRLLAG+G +LRLYD+G+++LLRKCEN+ PN I I+T RI+V D+QES
Sbjct: 949 ALCQFQGRLLAGIGPVLRLYDLGKKRLLRKCENKLFPNTIISIQTYRDRIYVGDIQESFH 1008
Query: 1012 CVKHKKRENQLIIFADDTNPRWITNSCILDYDTIAVSDKFGNVAIMRLPQSVSDDVDEDP 1071
K+++ ENQL IFADD PRW+T S +D+DT+A +DKFGNV +RLPQ +S++++EDP
Sbjct: 1009 YCKYRRDENQLYIFADDCVPRWLTASHHVDFDTMAGADKFGNVYFVRLPQDLSEEIEEDP 1068
Query: 1072 TGNKALWDRGLLNGASQKGDVVVNFHVGETVTSLQRATLIPGGSEALLYATISGSLGVLL 1131
TG K W++G LNGA K D +V FHVG+ VT LQ+A++IPGGSE+++Y T+ GS+G L
Sbjct: 1069 TGGKIKWEQGKLNGAPNKVDEIVQFHVGDVVTCLQKASMIPGGSESIMYGTVMGSIGALH 1128
Query: 1132 PFTSREDHDFFQHLEMHMRSENSPLCGRDHLSFRSYYYPVKNVIDGDLCEQFNSLDPGKQ 1191
FTSR+D DFF HLEMHMR E PLCGRDH+++RS Y+PVK+VIDGDLCEQF +L Q
Sbjct: 1129 AFTSRDDVDFFSHLEMHMRQEYPPLCGRDHMAYRSAYFPVKDVIDGDLCEQFPTLPMDLQ 1188
Query: 1192 KAIAGDLERTPAEVSKKLEDIRTR 1215
+ IA +L+RTPAE+ KKLED R +
Sbjct: 1189 RKIADELDRTPAEILKKLEDARNK 1212
>At3g55200.1 68416.m06131 splicing factor, putative contains CPSF A
subunit region (PF03178); contains weak WD-40 repeat
(PF00400); similar to Splicing factor 3B subunit 3
(SF3b130)/spliceosomal protein/Splicing factor 3B subunit
3 (SAP 130)(KIAA0017)(SP:Q15393) Homo sapiens,
EMBL:HSAJ1443_1
Length = 1214
Score = 1390 bits (3445), Expect = 0.0
Identities = 674/1224 (55%), Positives = 883/1224 (72%), Gaps = 21/1224 (1%)
Query: 1 MYLYNLTLQGSSAITHAVHGNFSGTKQQEIIISRGKTLELLRPDPNTGKVHTFMKIEIFG 60
MYLY+LTLQ ++ I A++GNFSG K QEI ++RGK L+LLRPD N GK+ T +E+FG
Sbjct: 1 MYLYSLTLQQATGIVCAINGNFSGGKTQEIAVARGKILDLLRPDEN-GKIQTIHSVEVFG 59
Query: 61 VVRSIMAFRLTGGTKDYIVVGSDSGRIIILEYIPTKNILEKVHQETFGKSGCRRIVPGQY 120
+RS+ FRLTG KDYIVVGSDSGRI+ILEY KN+ +KVHQETFGKSGCRRIVPGQY
Sbjct: 60 AIRSLAQFRLTGAQKDYIVVGSDSGRIVILEYNKEKNVFDKVHQETFGKSGCRRIVPGQY 119
Query: 121 LSIDPKGRAVMIGAIEKQKLVYILNRDAEARLTISSPLEAHKSNTLVYHMVGVDVGFENP 180
+++DPKGRAVMIGA EKQKLVY+LNRD ARLTISSPLEAHKS+T+ Y + GVD GF+NP
Sbjct: 120 VAVDPKGRAVMIGACEKQKLVYVLNRDTTARLTISSPLEAHKSHTICYSLCGVDCGFDNP 179
Query: 181 MFACLEIDYEEADSDPTGEAAQKTQQTLTFYELDLGLNHVVRKYSEPLEEHANFLITVPG 240
+FA +E+DY EAD DPTG+AA + Q+ LTFYELDLGLNHV RK+S P++ AN L+TVPG
Sbjct: 180 IFAAIELDYSEADQDPTGQAASEAQKHLTFYELDLGLNHVSRKWSNPVDNGANMLVTVPG 239
Query: 241 GNDGPSGVLICSENYLTYKNLGDQHDIRCPIPRRRNDLDDPERGMIFVCSATHKTKSMFF 300
G DGPSGVL+C+EN++ Y N G D+R IPRR DL ERG++ V +A HK K+MFF
Sbjct: 240 GADGPSGVLVCAENFVIYMNQGHP-DVRAVIPRR-TDLP-AERGVLVVSAAVHKQKTMFF 296
Query: 301 FLAQTEQGDIFKITIETDEDMVTEIKLKYFDTVPVATSMCVLKTGFLFVACEFGNHYLYQ 360
FL QTE GD+FK+T++ + D V+E+K+KYFDT+PVA+S+CVLK GFLF A EFGNH LYQ
Sbjct: 297 FLIQTEYGDVFKVTLDHNGDHVSELKVKYFDTIPVASSICVLKLGFLFSASEFGNHGLYQ 356
Query: 361 IAHLGDEDD-EPEFSSAMPLEEG-DTFFFAPRPLRNLVLVDEMDSLSPILACHVADLAGE 418
+G+E D E S+ M EEG FF PR L+NLV +D+++SL P++ V ++ E
Sbjct: 357 FQAIGEEPDVESSSSNLMETEEGFQPVFFQPRRLKNLVRIDQVESLMPLMDMKVLNIFEE 416
Query: 419 DTPQVYLACGRGPRSSLRALRHGLEVAEMAVSELPGSPNAVWTVRRNKDEEYDSYIIVSF 478
+TPQ++ CGRGPRSSLR LR GL + EMAVS+LPG P+AVWTV++N +E+D+YI+VSF
Sbjct: 417 ETPQIFSLCGRGPRSSLRILRPGLAITEMAVSQLPGQPSAVWTVKKNVSDEFDAYIVVSF 476
Query: 479 VNATLVLSIGETVEEVTDSGFLGTTPTLSCHAMGNDALVQVYPDGIRHIRADKRVNEWKA 538
NATLVLSIGE VEEV DSGFL TTP+L+ +G+D+L+QV+P+GIRHIR D R+NEW+
Sbjct: 477 TNATLVLSIGEQVEEVNDSGFLDTTPSLAVSLIGDDSLMQVHPNGIRHIREDGRINEWRT 536
Query: 539 PGKKSIVRCAVNQRQVVIALTGGELVYFEMDPTGQLNEYTERKKLSSDVCCMALGSVAAG 598
PGK+SIV+ N+ QVVIAL+GGEL+YFE D TGQL E E+ ++S DV C+ + V G
Sbjct: 537 PGKRSIVKVGYNRLQVVIALSGGELIYFEADMTGQLME-VEKHEMSGDVACLDIAPVPEG 595
Query: 599 EQRAWFLAVGLNDNTVRIISLDPADCLSPRSMQALPAGAESLCIIEQPFESGAKSA---- 654
+R+ FLAVG DNTVRI+SLDP DCL S+Q++ + ESL +E G
Sbjct: 596 RKRSRFLAVGSYDNTVRILSLDPDDCLQILSVQSVSSAPESLLFLEVQASIGGDDGADHP 655
Query: 655 --LHLNIGLSNGVLLRTTLDSVSGDLADTRTRYLGSRPVKLFKVRVQAAEAVLAVSSRTW 712
L LN GL NGVL RT +D V+G L+D+R+R+LG +P KLF + V+ A+L +SSR W
Sbjct: 656 ANLFLNSGLQNGVLFRTVVDMVTGQLSDSRSRFLGLKPPKLFSISVRGRSAMLCLSSRPW 715
Query: 713 LGYHYQNRFHLTPLSYECLEYAAGFSSEQCTEGIVAISSNTLRILALEKLGAVFNQTFVP 772
LGY ++ FHLTPLSYE LE+AA FSS+QC EG+V+++ + LRI +++LG FN+T VP
Sbjct: 716 LGYIHRGHFHLTPLSYETLEFAAPFSSDQCAEGVVSVAGDALRIFMIDRLGETFNETVVP 775
Query: 773 LEYTPRKFIINSDNNHIIVLETDHNAYTEEMKKHRRIQMAQEMREXXXXXXPEEQQLANE 832
L YTPRKF+++ ++++E+D A+T E ++ R + E Q+ N
Sbjct: 776 LRYTPRKFVLHPKRKLLVIIESDQGAFTAEEREAARKECF-EAGGVGENGNGNADQMENG 834
Query: 833 MADAFLSDTLPEYIFSSPKAGAGMWASLIRVVDMGIGGGQPNTLFRLPLEQNEAAVSLCI 892
D D L + + PKA + W S IRV+D T L L+ NEAA S+C
Sbjct: 835 ADDEDKEDPLSDEQYGYPKAESEKWVSCIRVLDPKTA----TTTCLLELQDNEAAYSVCT 890
Query: 893 VRWAAHAEHAQPHLVVGVAKDLILSPR-SCTEGSLHVYKIYGNTGKLELVHKTPVDEYPG 951
V + H + L VG K + P+ + G +H+Y+ + LEL+HKT V+ P
Sbjct: 891 VNF--HDKEYGTLLAVGTVKGMQFWPKKNLVAGFIHIYRFVEDGKSLELLHKTQVEGVPL 948
Query: 952 AIAAFNGRLLAGVGRMLRLYDIGRRKLLRKCENRHIPNLIADIKTIGQRIFVSDVQESVF 1011
A+ F GRLLAG+G +LRLYD+G+++LLRKCEN+ PN I I+T RI+V D+QES
Sbjct: 949 ALCQFQGRLLAGIGPVLRLYDLGKKRLLRKCENKLFPNTIISIQTYRDRIYVGDIQESFH 1008
Query: 1012 CVKHKKRENQLIIFADDTNPRWITNSCILDYDTIAVSDKFGNVAIMRLPQSVSDDVDEDP 1071
K+++ ENQL IFADD PRW+T S +D+DT+A +DKFGNV +RLPQ +S++++EDP
Sbjct: 1009 YCKYRRDENQLYIFADDCVPRWLTASHHVDFDTMAGADKFGNVYFVRLPQDLSEEIEEDP 1068
Query: 1072 TGNKALWDRGLLNGASQKGDVVVNFHVGETVTSLQRATLIPGGSEALLYATISGSLGVLL 1131
TG K W++G LNGA K D +V FHVG+ VT LQ+A++IPGGSE+++Y T+ GS+G L
Sbjct: 1069 TGGKIKWEQGKLNGAPNKVDEIVQFHVGDVVTCLQKASMIPGGSESIMYGTVMGSIGALH 1128
Query: 1132 PFTSREDHDFFQHLEMHMRSENSPLCGRDHLSFRSYYYPVKNVIDGDLCEQFNSLDPGKQ 1191
FTSR+D DFF HLEMHMR E PLCGRDH+++RS Y+PVK+VIDGDLCEQF +L Q
Sbjct: 1129 AFTSRDDVDFFSHLEMHMRQEYPPLCGRDHMAYRSAYFPVKDVIDGDLCEQFPTLPMDLQ 1188
Query: 1192 KAIAGDLERTPAEVSKKLEDIRTR 1215
+ IA +L+RTPAE+ KKLED R +
Sbjct: 1189 RKIADELDRTPAEILKKLEDARNK 1212
>At4g21100.1 68417.m03051 UV-damaged DNA-binding protein, putative
similar to UV-damaged DNA binding protein (GI:12082087)
[Oryza sativa] and damage-specific DNA binding protein
1, Homo sapiens, PIR2:I38908; contains Pfam PF03178 :
CPSF A subunit region
Length = 1088
Score = 156 bits (379), Expect = 7e-38
Identities = 188/814 (23%), Positives = 342/814 (42%), Gaps = 86/814 (10%)
Query: 4 YNLTLQGSSAITHAVHGNFSGTKQQEIIISRGKTLELLRPDPNTGKVHTFMKIEIFGVVR 63
Y +T Q + +TH+ GNF+ ++ +I+++ +E+ P + T + + ++G +
Sbjct: 6 YAVTAQKPTCVTHSCVGNFTSPQELNLIVAKSTRIEIHLLSPQG--LQTILDVPLYGRIA 63
Query: 64 SIMAFRLTGGTKDYIVVGSDSGRIIILEY-IPTKNILEKVHQETFGKSGCRRIVPGQYLS 122
++ FR G +D++ V ++ + +L++ + ++ + + + G R GQ
Sbjct: 64 TMELFRPHGEAQDFLFVATERYKFCVLQWDYESSELITRAMGDVSDRIG-RPTDNGQIGI 122
Query: 123 IDPKGRAVMIGAIEKQKLVYILNRDAEARLTISSPLEAHKSNTLVYHMVGVDVGFENPMF 182
IDP R +IG L ++ D + +L + + + L + G P
Sbjct: 123 IDPDCR--VIGLHLYDGLFKVIPFDNKGQLKEAFNIRLEELQVLDIKFL---YGCTKPTI 177
Query: 183 ACLEIDYEEADSDPTGEAAQKTQQTLTFYELDLGLNHVVRKYSEPLEEHANFLITVPGGN 242
A L D ++A T E + K + F E N+ L+ A+ LI VP
Sbjct: 178 AVLYQDNKDARHVKTYEVSLKDKN---FVEGPWSQNN--------LDNGADLLIPVPSPL 226
Query: 243 DGPSGVLICSENYLTY--KNLGDQHDIRCPIPRRRNDLD-DPERGMIFVCSATHKTKSMF 299
GVLI E + Y N IR I + +D D R
Sbjct: 227 ---CGVLIIGEETIVYCSANAFKAIPIRPSITKAYGRVDLDGSR---------------- 267
Query: 300 FFLAQTEQGDIFKITIETDEDMVTEIKLKYFDTVPVATSMCVLKTGFLFVACEFGNHYLY 359
+L G I + I +++ VT +K++ +A+S+ L +FV +G+ L
Sbjct: 268 -YLLGDHAGLIHLLVITHEKEKVTGLKIELLGETSIASSISYLDNAVVFVGSSYGDSQLI 326
Query: 360 QIAHLGDEDDEPEFSSAMPLEEGDTFFFAPRPLRNLVLVDEMDSLSPILACHVADLAGED 419
++ + P +G + ++++ +L PI+ V DL +
Sbjct: 327 KL-------------NLQPDAKGSY----------VEILEKYVNLGPIVDFCVVDLERQG 363
Query: 420 TPQVYLACGRGPRSSLRALRHGLEVAEMAVSELPGSPNAVWTVRRNKDEEYDSYIIVSFV 479
QV G SLR +R+G+ + E A EL G +W+++ + DE +D++++VSF+
Sbjct: 364 QGQVVTCSGAYKDGSLRIVRNGIGINEQASVELQGI-KGMWSLKSSIDEAFDTFLVVSFI 422
Query: 480 NAT--LVLSIGETVEEVTDSGFLGTTPTLSCHAMGNDALVQVYPDGIRHIRADKRV--NE 535
+ T L ++I + +EE GFL TL CH + LVQV + +R + + R N+
Sbjct: 423 SETRILAMNIEDELEETEIEGFLSEVQTLFCHDAVYNQLVQVTSNSVRLVSSTTRELRNK 482
Query: 536 WKAPGKKSIVRCAVNQRQVVIALTGGELVYFEMDPTGQLNEYTERKKLSSDVCCMALGSV 595
W AP S+ N QV++A GG LVY E+ G L E + L +V C+ + +
Sbjct: 483 WDAPAGFSVNVATANASQVLLATGGGHLVYLEIGD-GTLTE-VKHVLLEYEVSCLDINPI 540
Query: 596 AAGEQRAWFLAVGL-NDNTVRIISLDPADCLSPRSM--QALPAGAESLCIIEQPFESGAK 652
+ AVG+ D +VRI L ++ + + +P LC E
Sbjct: 541 GDNPNYSQLAAVGMWTDISVRIFVLPDLTLITKEELGGEIIPRSV-LLCAFE-------- 591
Query: 653 SALHLNIGLSNGVLLRTTLDSVSGDLADTRTRYLGSRPVKLFKVRVQAAEAVLAVSSRTW 712
+L L +G LL LD+ G L D + LG+RP+ L ++A V A S R
Sbjct: 592 GISYLLCALGDGHLLNFQLDTSCGKLRDRKKVSLGTRPITLRTFSSKSATHVFAASDRPA 651
Query: 713 LGYHYQNRFHLTPLSYECLEYAAGFSSEQCTEGIVAISSNTLRILALEKLGAVFNQTFVP 772
+ Y + + ++ + + + F+S + + L I ++ + + +T +P
Sbjct: 652 VIYSNNKKLLYSNVNLKEVSHMCPFNSAAFPDSLAIAREGELTIGTIDDIQKLHIRT-IP 710
Query: 773 LEYTPRKFIINSDNNHIIVLETDHNAYTEEMKKH 806
+ R+ + + EE + H
Sbjct: 711 IGEHARRICHQEQTRTFAISCLRNEPSAEESESH 744
Score = 87.4 bits (207), Expect = 5e-17
Identities = 77/301 (25%), Positives = 140/301 (46%), Gaps = 25/301 (8%)
Query: 922 TEGSLHVYKIYGNTGKLELVHKTPVDEYPGAIAAFNGRLLAGVGRMLRLY-----DIGRR 976
T+G + V+ + G+L+L+ + ++ AFNG+LLA + + ++LY D G R
Sbjct: 799 TKGRILVFIV--EEGRLQLITEKETKGAVYSLNAFNGKLLASINQKIQLYKWMLRDDGTR 856
Query: 977 KLLRKCENRHIPNLIADIKTIGQRIFVSDVQESVFCVKHKKRENQLIIFADDTNPRWITN 1036
+L +C H L ++T G I V D+ +S+ + +K E + A D N W+T
Sbjct: 857 ELQSEC-GHHGHILALYVQTRGDFIAVGDLMKSISLLIYKHEEGAIEERARDYNANWMTA 915
Query: 1037 SCILDYDTIAVSDKFGNVAIMRLPQSVSDDVDEDPTGNKALWDRGLLNGASQKGDVVVNF 1096
IL+ D +D N+ ++ ++ DE+ + + G G+ V F
Sbjct: 916 VEILNDDIYLGTDNCFNIFTVK--KNNEGATDEERARMEVV-------GEYHIGEFVNRF 966
Query: 1097 HVGETVTSLQRATLIPGGSEALLYATISGSLGVLLPFTSREDHDFFQHLEMHMRSENSPL 1156
G V L + + G +++ T+SG +GV+ +E + F + L+ +R +
Sbjct: 967 RHGSLVMKLPDSDI--GQIPTVIFGTVSGMIGVIASLP-QEQYAFLEKLQTSLRKVIKGV 1023
Query: 1157 CGRDHLSFRSYYYP-----VKNVIDGDLCEQFNSLDPGKQKAIAGDLERTPAEVSKKLED 1211
G H +RS+ K +DGDL E F L GK + I+ ++ E+ K++E+
Sbjct: 1024 GGLSHEQWRSFNNEKRTAEAKGYLDGDLIESFLDLSRGKMEEISKGMDVQVEELCKRVEE 1083
Query: 1212 I 1212
+
Sbjct: 1084 L 1084
>At4g05420.1 68417.m00824 UV-damaged DNA-binding protein, putative
similar to UV-damaged DNA binding protein (GI:12082087)
[Oryza sativa]; contains Pfam PF03178 : CPSF A subunit
region
Length = 1088
Score = 154 bits (373), Expect = 4e-37
Identities = 183/811 (22%), Positives = 346/811 (42%), Gaps = 80/811 (9%)
Query: 4 YNLTLQGSSAITHAVHGNFSGTKQQEIIISRGKTLELLRPDPNTGKVHTFMKIEIFGVVR 63
Y +T +++TH+ GNF+ ++ +I+++ +E+ P + + + I+G +
Sbjct: 6 YVVTAHKPTSVTHSCVGNFTSPQELNLIVAKCTRIEIHLLTPQG--LQPMLDVPIYGRIA 63
Query: 64 SIMAFRLTGGTKDYIVVGSDSGRIIILEYIP-TKNILEKVHQETFGKSGCRRIVPGQYLS 122
++ FR G +D++ + ++ + +L++ P + ++ + + + G R GQ
Sbjct: 64 TLELFRPHGEAQDFLFIATERYKFCVLQWDPESSELITRAMGDVSDRIG-RPTDNGQIGI 122
Query: 123 IDPKGRAVMIGAIEKQKLVYILNRDAEARLTISSPLEAHKSNTLVYHMVGVDVGFENPMF 182
IDP R +IG L ++ D + +L + + + L + G P
Sbjct: 123 IDPDCR--LIGLHLYDGLFKVIPFDNKGQLKEAFNIRLEELQVLDIKFL---FGCAKPTI 177
Query: 183 ACLEIDYEEADSDPTGEAAQKTQQTLTFYELDLGLNHVVRKYSEPLEEHANFLITVPGGN 242
A L D ++A T E + K + F E N L+ A+ LI VP
Sbjct: 178 AVLYQDNKDARHVKTYEVSLKDKD---FVEGPWSQNS--------LDNGADLLIPVP--- 223
Query: 243 DGPSGVLICSENYLTYKNLGDQHDIRCPIPRRRNDLDDPERGMIFVCSATHKTKSMFFFL 302
GVLI E + Y + I PI R + G + V + +L
Sbjct: 224 PPLCGVLIIGEETIVYCSASAFKAI--PI---RPSITKAY-GRVDVDGSR--------YL 269
Query: 303 AQTEQGDIFKITIETDEDMVTEIKLKYFDTVPVATSMCVLKTGFLFVACEFGNHYLYQIA 362
G I + I +++ VT +K++ +A+++ L +FV +G+ L ++
Sbjct: 270 LGDHAGMIHLLVITHEKEKVTGLKIELLGETSIASTISYLDNAVVFVGSSYGDSQLVKL- 328
Query: 363 HLGDEDDEPEFSSAMPLEEGDTFFFAPRPLRNLVLVDEMDSLSPILACHVADLAGEDTPQ 422
+ P +G + +++ +L PI+ V DL + Q
Sbjct: 329 ------------NLHPDAKGSY----------VEVLERYINLGPIVDFCVVDLERQGQGQ 366
Query: 423 VYLACGRGPRSSLRALRHGLEVAEMAVSELPGSPNAVWTVRRNKDEEYDSYIIVSFVNAT 482
V G SLR +R+G+ + E A EL G +W+++ + DE +D++++VSF++ T
Sbjct: 367 VVTCSGAFKDGSLRVVRNGIGINEQASVELQGI-KGMWSLKSSIDEAFDTFLVVSFISET 425
Query: 483 LVLSIG--ETVEEVTDSGFLGTTPTLSCHAMGNDALVQVYPDGIRHIRADKRV--NEWKA 538
+L++ + +EE GFL TL CH + LVQV + +R + + R +EW A
Sbjct: 426 RILAMNLEDELEETEIEGFLSQVQTLFCHDAVYNQLVQVTSNSVRLVSSTTRELRDEWHA 485
Query: 539 PGKKSIVRCAVNQRQVVIALTGGELVYFEMDPTGQLNEYTERKKLSSDVCCMALGSVAAG 598
P ++ N QV++A GG LVY E+ G+L E + L +V C+ + +
Sbjct: 486 PAGFTVNVATANASQVLLATGGGHLVYLEIGD-GKLTE-VQHALLEYEVSCLDINPIGDN 543
Query: 599 EQRAWFLAVGL-NDNTVRIISLDPADCLSPRSM--QALPAGAESLCIIEQPFESGAKSAL 655
+ AVG+ D +VRI SL ++ + + +P LC E
Sbjct: 544 PNYSQLAAVGMWTDISVRIFSLPELTLITKEQLGGEIIPRSV-LLCAFE--------GIS 594
Query: 656 HLNIGLSNGVLLRTTLDSVSGDLADTRTRYLGSRPVKLFKVRVQAAEAVLAVSSRTWLGY 715
+L L +G LL +D+ +G L D + LG++P+ L ++A V A S R + Y
Sbjct: 595 YLLCALGDGHLLNFQMDTTTGQLKDRKKVSLGTQPITLRTFSSKSATHVFAASDRPTVIY 654
Query: 716 HYQNRFHLTPLSYECLEYAAGFSSEQCTEGIVAISSNTLRILALEKLGAVFNQTFVPLEY 775
+ + ++ + + + F+S + + L I ++ + + +T +PL
Sbjct: 655 SSNKKLLYSNVNLKEVSHMCPFNSAAFPDSLAIAREGELTIGTIDDIQKLHIRT-IPLGE 713
Query: 776 TPRKFIINSDNNHIIVLETDHNAYTEEMKKH 806
R+ + + + +EE + H
Sbjct: 714 HARRICHQEQTRTFGICSLGNQSNSEESEMH 744
Score = 87.0 bits (206), Expect = 7e-17
Identities = 81/335 (24%), Positives = 150/335 (44%), Gaps = 32/335 (9%)
Query: 891 CIVRWAAHAEHAQPHLVVGVAKDLILSPRSCTEGSLHVYKIYGNTGKLELVHKTPVDEYP 950
C + + E + VG A ++ T+G + V+ + G+L+L+ +
Sbjct: 769 CSILSCSFTEDKNVYYCVGTAY-VLPEENEPTKGRILVFIV--EDGRLQLIAEKETKGAV 825
Query: 951 GAIAAFNGRLLAGVGRMLRLY-----DIGRRKLLRKCENRHIPNLIADIKTIGQRIFVSD 1005
++ AFNG+LLA + + ++LY D G R+L +C H L ++T G I V D
Sbjct: 826 YSLNAFNGKLLAAINQKIQLYKWMLRDDGTRELQSEC-GHHGHILALYVQTRGDFIVVGD 884
Query: 1006 VQESVFCVKHKKRENQLIIFADDTNPRWITNSCILDYDT-IAVSDKFGNVAIMRLPQSVS 1064
+ +S+ + +K E + A D N W++ ILD D + + F + + + + +
Sbjct: 885 LMKSISLLLYKHEEGAIEERARDYNANWMSAVEILDDDIYLGAENNFNLLTVKKNSEGAT 944
Query: 1065 DDVDEDPTGNKALWDRGLLN--GASQKGDVVVNFHVGETVTSLQRATLIPGGSEALLYAT 1122
D+ +RG L G G+ V F G V L + + G +++ T
Sbjct: 945 DE------------ERGRLEVVGEYHLGEFVNRFRHGSLVMRLPDSEI--GQIPTVIFGT 990
Query: 1123 ISGSLGVLLPFTSREDHDFFQHLEMHMRSENSPLCGRDHLSFRSYYYP-----VKNVIDG 1177
++G +GV+ +E + F + L+ +R + G H +RS+ +N +DG
Sbjct: 991 VNGVIGVIASLP-QEQYTFLEKLQSSLRKVIKGVGGLSHEQWRSFNNEKRTAEARNFLDG 1049
Query: 1178 DLCEQFNSLDPGKQKAIAGDLERTPAEVSKKLEDI 1212
DL E F L K + I+ + E+ K++E++
Sbjct: 1050 DLIESFLDLSRNKMEDISKSMNVQVEELCKRVEEL 1084
>At3g11960.2 68416.m01476 cleavage and polyadenylation specificity
factor (CPSF) A subunit C-terminal domain-containing
protein similar to Splicing factor 3B subunit 3
(Spliceosome associatedprotein 130) (SAP 130) (SF3b130)
(Pre-mRNA splicing factor SF3b 130kDa subunit)
(SP:Q15393) [Homo sapiens]; contains Pfam PF03178 : CPSF
A subunit region
Length = 1329
Score = 82.2 bits (194), Expect = 2e-15
Identities = 43/130 (33%), Positives = 71/130 (54%), Gaps = 2/130 (1%)
Query: 398 VDEMDSLSPILACHVADLAGEDTPQVYLACGRGPRSSLRALRHGLEVAEMA-VSELPGSP 456
+ + +++PIL V D E Q++ CG P SLR +R G+ V ++ + +
Sbjct: 405 MSSIQNIAPILDFSVMDDQNEKRDQIFACCGVTPEGSLRIIRSGINVEKLLKTAPVYQGI 464
Query: 457 NAVWTVRRNKDEEYDSYIIVSFVNATLVLSIGETVEEVTDS-GFLGTTPTLSCHAMGNDA 515
WTV+ + Y S++++SFV T VLS+G + ++VTDS GF T +C + +
Sbjct: 465 TGTWTVKMKLTDVYHSFLVLSFVEETRVLSVGLSFKDVTDSVGFQSDVCTFACGLVADGL 524
Query: 516 LVQVYPDGIR 525
LVQ++ D IR
Sbjct: 525 LVQIHQDAIR 534
Score = 58.8 bits (136), Expect = 2e-08
Identities = 50/233 (21%), Positives = 105/233 (45%), Gaps = 20/233 (8%)
Query: 990 LIADIKTIGQRIFVSDVQESVFCVKHKKRENQLIIFADDTNPRWITNSCILDYDTIAVSD 1049
+I ++T RI V D ++ V + + +L D R + + ++D +++AVSD
Sbjct: 1067 MITSLRTYFTRIVVGDCRDGVLFYSYHEESKKLHQIYCDPAQRLVADCFLMDANSVAVSD 1126
Query: 1050 KFGNVAIMRLPQ----------SVSDDVDE--DPTGNKAL---WDRGLLNGASQKGDVVV 1094
+ G++AI+ + D E P N L + G + + +KG +
Sbjct: 1127 RKGSIAILSCKDHSDFGMKHLVKIPHDNPEYSSPESNLNLNCAYYMGEIAMSIKKGCNIY 1186
Query: 1095 NFHVGETVTSLQRATLIPGGSEALLYATISGSLGVLLPFTSREDHDFFQHLE--MHMRSE 1152
+ + S + I + ++ T+ GS+ V P +S E+++ + ++ + +
Sbjct: 1187 KLPADDVLRSYGLSKSIDTADDTIIAGTLLGSIFVFAPISS-EEYELLEGVQAKLGIHPL 1245
Query: 1153 NSPLCGRDHLSFRSYYYP--VKNVIDGDLCEQFNSLDPGKQKAIAGDLERTPA 1203
+P+ G DH FR P + ++DGD+ QF L +Q+++ + +P+
Sbjct: 1246 TAPVLGNDHNEFRGRENPSQARKILDGDMLAQFLELTNRQQESVLSTPQPSPS 1298
Score = 53.6 bits (123), Expect = 8e-07
Identities = 36/124 (29%), Positives = 60/124 (48%), Gaps = 1/124 (0%)
Query: 672 DSVSGDLADTRTRYLGSRPVKLFKVRVQAAEAVLAVSSRTWLGYHYQNRFHLTPLSYECL 731
D++ +L TR +G PV L ++A+S R WL + T +S++
Sbjct: 750 DNLPVNLLLIATRRIGITPVFLVPFSDSLDSDIIALSDRPWLLQTARQSLSYTSISFQPS 809
Query: 732 EYAAGFSSEQCTEGIVAISSNTLRILALEKLGAVFNQTFVPLEYTPRKFIINSDNNHIIV 791
+A S +C +GI+ +S N L ++ + Q F L TPRK I +S++ +IV
Sbjct: 810 THATPVCSFECPQGILFVSENCLHLVEMVHSKRRNAQKF-QLGGTPRKVIYHSESKLLIV 868
Query: 792 LETD 795
+ TD
Sbjct: 869 MRTD 872
>At3g11960.1 68416.m01475 cleavage and polyadenylation specificity
factor (CPSF) A subunit C-terminal domain-containing
protein similar to Splicing factor 3B subunit 3
(Spliceosome associatedprotein 130) (SAP 130) (SF3b130)
(Pre-mRNA splicing factor SF3b 130kDa subunit)
(SP:Q15393) [Homo sapiens]; contains Pfam PF03178 : CPSF
A subunit region
Length = 1379
Score = 82.2 bits (194), Expect = 2e-15
Identities = 43/130 (33%), Positives = 71/130 (54%), Gaps = 2/130 (1%)
Query: 398 VDEMDSLSPILACHVADLAGEDTPQVYLACGRGPRSSLRALRHGLEVAEMA-VSELPGSP 456
+ + +++PIL V D E Q++ CG P SLR +R G+ V ++ + +
Sbjct: 463 MSSIQNIAPILDFSVMDDQNEKRDQIFACCGVTPEGSLRIIRSGINVEKLLKTAPVYQGI 522
Query: 457 NAVWTVRRNKDEEYDSYIIVSFVNATLVLSIGETVEEVTDS-GFLGTTPTLSCHAMGNDA 515
WTV+ + Y S++++SFV T VLS+G + ++VTDS GF T +C + +
Sbjct: 523 TGTWTVKMKLTDVYHSFLVLSFVEETRVLSVGLSFKDVTDSVGFQSDVCTFACGLVADGL 582
Query: 516 LVQVYPDGIR 525
LVQ++ D IR
Sbjct: 583 LVQIHQDAIR 592
Score = 62.9 bits (146), Expect = 1e-09
Identities = 48/225 (21%), Positives = 103/225 (45%), Gaps = 12/225 (5%)
Query: 990 LIADIKTIGQRIFVSDVQESVFCVKHKKRENQLIIFADDTNPRWITNSCILDYDTIAVSD 1049
+I ++T RI V D ++ V + + +L D R + + ++D +++AVSD
Sbjct: 1125 MITSLRTYFTRIVVGDCRDGVLFYSYHEESKKLHQIYCDPAQRLVADCFLMDANSVAVSD 1184
Query: 1050 KFGNVAIMRLPQSVSDDVD----EDPTGNKAL---WDRGLLNGASQKGDVVVNFHVGETV 1102
+ G++AI+ + P N L + G + + +KG + + +
Sbjct: 1185 RKGSIAILSCKDHSDFGMKHLEYSSPESNLNLNCAYYMGEIAMSIKKGCNIYKLPADDVL 1244
Query: 1103 TSLQRATLIPGGSEALLYATISGSLGVLLPFTSREDHDFFQHLE--MHMRSENSPLCGRD 1160
S + I + ++ T+ GS+ V P +S E+++ + ++ + + +P+ G D
Sbjct: 1245 RSYGLSKSIDTADDTIIAGTLLGSIFVFAPISS-EEYELLEGVQAKLGIHPLTAPVLGND 1303
Query: 1161 HLSFRSYYYP--VKNVIDGDLCEQFNSLDPGKQKAIAGDLERTPA 1203
H FR P + ++DGD+ QF L +Q+++ + +P+
Sbjct: 1304 HNEFRGRENPSQARKILDGDMLAQFLELTNRQQESVLSTPQPSPS 1348
Score = 53.6 bits (123), Expect = 8e-07
Identities = 36/124 (29%), Positives = 60/124 (48%), Gaps = 1/124 (0%)
Query: 672 DSVSGDLADTRTRYLGSRPVKLFKVRVQAAEAVLAVSSRTWLGYHYQNRFHLTPLSYECL 731
D++ +L TR +G PV L ++A+S R WL + T +S++
Sbjct: 808 DNLPVNLLLIATRRIGITPVFLVPFSDSLDSDIIALSDRPWLLQTARQSLSYTSISFQPS 867
Query: 732 EYAAGFSSEQCTEGIVAISSNTLRILALEKLGAVFNQTFVPLEYTPRKFIINSDNNHIIV 791
+A S +C +GI+ +S N L ++ + Q F L TPRK I +S++ +IV
Sbjct: 868 THATPVCSFECPQGILFVSENCLHLVEMVHSKRRNAQKF-QLGGTPRKVIYHSESKLLIV 926
Query: 792 LETD 795
+ TD
Sbjct: 927 MRTD 930
>At5g51660.1 68418.m06405 cleavage and polyadenylation specificity
factor (CPSF) A subunit C-terminal domain-containing
protein similar to SP|Q9EPU4 Cleavage and polyadenylation
specificity factor, 160 kDa subunit (CPSF 160 kDa
subunit) {Mus musculus}; contains Pfam profile PF03178:
CPSF A subunit region
Length = 1442
Score = 48.4 bits (110), Expect = 3e-05
Identities = 80/378 (21%), Positives = 155/378 (41%), Gaps = 41/378 (10%)
Query: 861 IRVVDMGIGGGQPNTLFRLPLEQNEAAVSLCIVRWAAHAEHAQPHLVVGVAKDLILSPRS 920
I++++ GG T ++P++ +E A+++ +V +A + ++ V +
Sbjct: 1085 IQILEPERSGGPWETKAKIPMQTSEHALTVRVVT-LLNASTGENETLLAVGTAYVQGEDV 1143
Query: 921 CTEGSLHVYKIYGNTG--KLELVHKTPVDEYPGAI---AAFNGRLLAGVGRMLRLYDIGR 975
G + ++ +G G +V + E GAI A+ G LL G + L+
Sbjct: 1144 AARGRVLLFS-FGKNGDNSQNVVTEVYSRELKGAISAVASIQGHLLISSGPKIILHKWNG 1202
Query: 976 RKLLRKCENRHIPNLIADIKTIGQRIFVSDVQESVFCVKHKKRENQLIIFADD-TNPRWI 1034
+L P + + + I + DV +S++ + K++ +QL + A D +
Sbjct: 1203 TELNGVAFFDAPPLYVVSMNVVKSFILLGDVHKSIYFLSWKEQGSQLSLLAKDFESLDCF 1262
Query: 1035 TNSCILDYDT--IAVSDKFGNVAIMRLPQSVSDDVDEDPTGNKALWDRGLLNGASQKGDV 1092
++D T +AVSD+ N+ + + + E G K LL+ A
Sbjct: 1263 ATEFLIDGSTLSLAVSDEQKNIQVF----YYAPKMIESWKGLK------LLSRA------ 1306
Query: 1093 VVNFHVGETVTSLQRATLIPGGSE-----ALLYATISGSLGVLLPFTSREDHDFFQHLEM 1147
FHVG V+ R ++ G++ ALL+ T+ GS G + P Q L+
Sbjct: 1307 --EFHVGAHVSKFLRLQMVSSGADKINRFALLFGTLDGSFGCIAPL-DEVTFRRLQSLQK 1363
Query: 1148 HMRSENSPLCGRDHLSFRSYYYPVK-------NVIDGDLCEQFNSLDPGKQKAIAGDLER 1200
+ + G + L+FR + K +++D +L + L +Q +A +
Sbjct: 1364 KLVDAVPHVAGLNPLAFRQFRSSGKARRSGPDSIVDCELLCHYEMLPLEEQLELAHQIGT 1423
Query: 1201 TPAEVSKKLEDIRTRYAF 1218
T + K L D+ +F
Sbjct: 1424 TRYSILKDLVDLSVGTSF 1441
Score = 37.1 bits (82), Expect = 0.072
Identities = 30/114 (26%), Positives = 50/114 (43%), Gaps = 17/114 (14%)
Query: 428 GRGPRSSLRALRHGLEVAEMAVSELPGSPNAVWTVRRNK--------------DEEYDSY 473
G G +L LR + + ELPG +WTV ++EY +Y
Sbjct: 548 GHGKNGALCVLRQSIRPEMITEVELPGC-KGIWTVYHKSSRGHNADSSKMAADEDEYHAY 606
Query: 474 IIVSFVNATLVLSIGETVEEVTDS-GFLGTTPTLSC-HAMGNDALVQVYPDGIR 525
+I+S T+VL + + EVT+S + T++ + G ++QV+ G R
Sbjct: 607 LIISLEARTMVLETADLLTEVTESVDYYVQGRTIAAGNLFGRRRVIQVFEHGAR 660
>At5g57590.1 68418.m07195 aminotransferase class III family protein
low similarity to 7,8-diaminopelargonic acid
aminotransferase BioA [Mesorhizobium loti] GI:12044306;
contains Pfam profile PF00202: aminotransferase, class
III
Length = 523
Score = 31.9 bits (69), Expect = 2.7
Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
Query: 950 PGAIAAFNGR--LLAGVGRMLRLYDIGRRKLLRKCENRHIPNLIADIKTIGQRIFVSDVQ 1007
PG +A+ L+ G G M + + +R L+ +C NR IP + ++ T R+ V
Sbjct: 283 PGTLASMTSHSLLIHGAGGMHMVDPLFQRVLVNECRNRKIPVIFDEVFTGFWRLGVETTT 342
Query: 1008 ESVFC 1012
E + C
Sbjct: 343 ELLGC 347
>At1g78850.1 68414.m09191 curculin-like (mannose-binding) lectin
family protein low similarity to ser/thr protein kinase
from Zea mays [GI:2598067]; contains Pfam lectin
(probable mannose binding) domain PF01453
Length = 441
Score = 30.7 bits (66), Expect = 6.3
Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Query: 770 FVPLEYTP--RKFIINSDNNHIIVLETDHNAYTEEMKKHRRIQ 810
+ P+EY P R F+ SDN + T NAYT ++ R+Q
Sbjct: 41 YSPIEYNPDVRGFVPFSDNFRLCFYNTTPNAYTLALRIGNRVQ 83
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.320 0.136 0.403
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,621,900
Number of Sequences: 28952
Number of extensions: 1323588
Number of successful extensions: 2598
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 2542
Number of HSP's gapped (non-prelim): 21
length of query: 1218
length of database: 12,070,560
effective HSP length: 89
effective length of query: 1129
effective length of database: 9,493,832
effective search space: 10718536328
effective search space used: 10718536328
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 65 (30.3 bits)
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