Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000829-TA|BGIBMGA000829-PA|IPR004871|CPSF A subunit,
C-terminal, IPR011046|WD40-like, IPR003006|Immunoglobulin/major
histocompatibility complex
(1218 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPJ698.03c |prp12|sap130|U2 snRNP-associated protein Sap130 |S... 1044 0.0
SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1 |Schizosacc... 58 1e-08
SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces... 45 7e-05
SPCC11E10.08 |rik1||silencing protein Rik1|Schizosaccharomyces p... 35 0.080
SPBC23G7.06c |||conserved eukaryotic protein|Schizosaccharomyces... 31 1.3
SPCC126.04c |||SAGA complex subunit Sgf73 |Schizosaccharomyces p... 30 1.7
SPAC3H8.05c |||conserved fungal protein|Schizosaccharomyces pomb... 29 3.0
SPCC663.12 |cid12||poly|Schizosaccharomyces pombe|chr 3|||Manual 29 4.0
SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces... 29 4.0
SPCC1020.01c |pma2|SPCC1393.01|P-type proton ATPase Pma2 |Schizo... 29 5.2
SPCC1259.10 |pgp1||metallopeptidase Pgp1|Schizosaccharomyces pom... 29 5.2
SPBC1709.06 |dus2||tRNA dihydrouridine synthase Dus2 |Schizosacc... 28 9.2
SPAC6F12.10c |ade3|min11|phosphoribosylformylglycinamidine synth... 28 9.2
>SPAPJ698.03c |prp12|sap130|U2 snRNP-associated protein Sap130
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1206
Score = 1044 bits (2584), Expect = 0.0
Identities = 564/1240 (45%), Positives = 775/1240 (62%), Gaps = 67/1240 (5%)
Query: 1 MYLYNLTLQGSSAITHAVHGNFSGTKQQEIIISRGKTLELLRPDPNTGKVHTFMKIEIFG 60
++LY+LT+Q S+ + + + SG K QEI+I+ L + + D G+++ + FG
Sbjct: 7 LFLYSLTIQNSNYVQSSCAASLSGKKAQEIVIATESRLLIYKVDATDGRMNCILNQNCFG 66
Query: 61 VVRSIMAFRLTGGTKDYIVVGSDSGRIIILEYIPTKNILEKVHQETFGKSGCRRIVPGQY 120
++R++ RLTG +DY+VV SDSGRI ILEY KN L ++QETFGKSG RR+VPG+Y
Sbjct: 67 IIRNVAPLRLTGFKRDYLVVTSDSGRITILEYNVEKNKLVPIYQETFGKSGIRRVVPGEY 126
Query: 121 LSIDPKGRAVMIGAIEKQKLVYILNRDAEARLTISSPLEAHKSNTLVYHMVGVDVGFENP 180
L+ID KGRA MI ++EK KLVY+LNRD+EA LTISSPLEAHK+N + +H++G+D G+ NP
Sbjct: 127 LAIDAKGRAAMIASVEKNKLVYVLNRDSEANLTISSPLEAHKANNICFHLIGLDTGYANP 186
Query: 181 MFACLEIDYEEADSDPTGEAAQKTQQTLTFYELDLGLNHVVRKYSEPLEEHANFLITVPG 240
+FA LE+DY E D D T EA +++ L++YELDLGLNHVV+++S+ ++ ++ LI VPG
Sbjct: 187 IFAALEVDYSEIDHDSTREAFTSSEKVLSYYELDLGLNHVVKRWSKVVDRNSYMLIPVPG 246
Query: 241 GNDGPSGVLICSENYLTYKNLGDQ-HDIRCPIPRRR----NDLDDP---------ERGMI 286
GNDGPSG L+ S +++Y++L H I PI RR+ N + P G +
Sbjct: 247 GNDGPSGTLVISNGWISYRHLQKAFHQI--PILRRQAASANAISTPWNQVNSNSANDGPL 304
Query: 287 FVCSATHKTKSMFFFLAQTEQGDIFKITIETD-EDMVTEIKLKYFDTVPVATSMCVLKTG 345
V + HK K FF+L QT GD+ K+TIE D + V E++LKYFDTVP+A + +LKTG
Sbjct: 305 IVSAVLHKMKGSFFYLLQTGDGDLLKLTIEHDGQGNVVELRLKYFDTVPLAVQLNILKTG 364
Query: 346 FLFVACEFGNHYLYQIAHLGDEDDEPEFSS----AMPLEEGD-TFFFAPRPLRNLVLVDE 400
FLFVA EFGNH LYQ +LG +DDE E +S A E G F R L+NL LV+E
Sbjct: 365 FLFVATEFGNHQLYQFENLGIDDDELEITSLDFQAQDNEVGTKNVHFGVRGLQNLSLVEE 424
Query: 401 MDSLSPILACHV--ADLAGEDTPQVYLACGRGPRSSLRALRHGLEVAEMAVSELPGSPNA 458
+ SL + + A +GE Q+Y CGRG SSLR LR GLE E+ SELPG+P A
Sbjct: 425 IPSLYSLTDTLLMKAPSSGEAN-QLYTVCGRGSNSSLRQLRRGLETTEIVASELPGAPIA 483
Query: 459 VWTVRRNKDEEYDSYIIVSFVNATLVLSIGETVEEVTDSGFLGTTPTLSCHAMGNDALVQ 518
+WT++ N+ + YDSYII+SF N TLVLSIGETVEE++DSGFL + TL+ MG D+LVQ
Sbjct: 484 IWTLKLNQTDVYDSYIILSFTNGTLVLSIGETVEEISDSGFLSSVSTLNARQMGRDSLVQ 543
Query: 519 VYPDGIRHIRADKRVNEWKAPGKKSIVRCAVNQRQVVIALTGGELVYFEMDPT---GQLN 575
++P GIR+IRA+K+ +EWK P +V+ A+N Q+V+AL+ GELVYFEM GQLN
Sbjct: 544 IHPKGIRYIRANKQTSEWKLPQDVYVVQSAINDMQIVVALSNGELVYFEMSDDVEGGQLN 603
Query: 576 EYTERKKLSSDVCCMALGSVAAGEQRAWFLAVGLNDNTVRIISLDPADCLSPRSMQALPA 635
EY ERK L+++V +ALG V G +R+ F+ + +D TVR++SLD L S+QAL +
Sbjct: 604 EYQERKTLTANVTSLALGPVQEGSRRSNFMCLACDDATVRVLSLDLYTTLENLSVQALSS 663
Query: 636 GAESLCIIEQPFESGAKSALHLNIGLSNGVLLRTTLDSVSGDLADTRTRYLGSRPVKLFK 695
A SLCII P S L+L+IGL NGV LRT +D SG L DTRTR+LG R VK++
Sbjct: 664 PANSLCII--PMNVNGVSTLYLHIGLMNGVYLRTVIDVTSGQLLDTRTRFLGPRAVKIYP 721
Query: 696 VRVQAAEAVLAVSSRTWLGYHYQNRFHLTPLSYECLEYAAGFSSEQCTEGIVAISSNTLR 755
+ ++ VLAVSSRT+L Y YQ L+P++Y +++A+ F+SEQC EGIVAI NTL+
Sbjct: 722 ITMKNQNTVLAVSSRTFLAYSYQQNLQLSPIAYSAIDHASSFASEQCPEGIVAIQKNTLK 781
Query: 756 ILALEKLGAVFNQTFVPLEYTPRKFIINSDNNHIIVLETDHNAYTEEMKKHRRIQMAQEM 815
I ++ L PL TPRK + + + + +L+++ + + AQE
Sbjct: 782 IFTVDSLQDDLKSDIYPLICTPRKIVKHPNFPVLYILQSE--------RNFDSFKYAQEN 833
Query: 816 REXXXXXXPEEQQLANEMADAFLSDTLPEYIFSSPKAGAGMWASLIRVVDMGIGGGQPNT 875
+ E+Q E+ S W S I V DM
Sbjct: 834 GDVGSSYTKEKQN---------------EHTSKS-------WVSFISVFDMI----SKKI 867
Query: 876 LFRLPLEQNEAAVSLCIVRWAAHAEHAQPHLVVGVAKDLILSPRSCTEGSLHVYKIYGNT 935
+ PL NEAA S+ + E LV G A ++ L R+C+ G+ VY+ +
Sbjct: 868 IHESPLGDNEAAFSMTAAFFKNRDEF---FLVAGSATNMDLECRTCSHGNFRVYRFHDEG 924
Query: 936 GKLELVHKTPVDEYPGAIAAFNGRLLAGVGRMLRLYDIGRRKLLRKCENRHIPNLIADIK 995
KLEL+ T +D P A+ F GR+LAGVGR LR+YD+G +K+LRK E +P I I
Sbjct: 925 KKLELISHTEIDGIPMALTPFQGRMLAGVGRFLRIYDLGNKKMLRKGELSAVPLFITHIT 984
Query: 996 TIGQRIFVSDVQESVFCVKHKKRENQLIIFADDTNPRWITNSCILDYDTIAVSDKFGNVA 1055
RI V+D Q SV V +K +N L+ FADDT RW T + ++DYDT+A DKFGN+
Sbjct: 985 VQASRIVVADSQYSVRFVVYKPEDNHLLTFADDTIHRWTTTNVLVDYDTLAGGDKFGNIW 1044
Query: 1056 IMRLPQSVSDDVDEDPTGNKALWDRGLLNGASQKGDVVVNFHVGETVTSLQRATLIPGGS 1115
++R P+ VS DE+ + +K + ++ LN K D++ +F + TSLQ+ L+ G
Sbjct: 1045 LLRCPEHVSKLADEENSESKLIHEKPFLNSTPHKLDLMAHFFTNDIPTSLQKVQLVEGAR 1104
Query: 1116 EALLYATISGSLGVLLPFTSREDHDFFQHLEMHMRSENSPLCGRDHLSFRSYYYPVKNVI 1175
E LL+ + G++GV PF ++ED FFQ LE +R E PL GRDHL++RSYY PVK VI
Sbjct: 1105 EVLLWTGLLGTVGVFTPFINQEDVRFFQQLEFLLRKECPPLAGRDHLAYRSYYAPVKCVI 1164
Query: 1176 DGDLCEQFNSLDPGKQKAIAGDLERTPAEVSKKLEDIRTR 1215
DGDLCE + SL Q+ IA +L+RT AEVSKK+ED R R
Sbjct: 1165 DGDLCEMYYSLPHPVQEMIANELDRTIAEVSKKIEDFRVR 1204
>SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1072
Score = 57.6 bits (133), Expect = 1e-08
Identities = 150/810 (18%), Positives = 311/810 (38%), Gaps = 90/810 (11%)
Query: 4 YNLTLQGSSAITHAVHGNFSGTKQQEIIISRGKTLELLRPDPNTGKVHTFMKIEIFGVVR 63
Y L S+I +AV F +I+++ LE+ + N ++ IF +
Sbjct: 3 YVTYLHKPSSIRNAVFCKFVNASSWNVIVAKVNCLEVYSYENN--RLCLITSANIFAKIV 60
Query: 64 SIMAFRLTGGTKDYIVVGSDSGRIIILEYIPTKNILEK-VHQETFGKSGCRRIVPGQYLS 122
++ AF+ D+I+V +DS R L + N + + + + R G L
Sbjct: 61 NVKAFKPVSSPTDHIIVATDSFRYFTLFWDANDNTVSNGIKIQDCSERSLRESQSGPLLL 120
Query: 123 IDPKGRAVMIGAIEKQKLVYILNRDAEARLTISSPLEAHKS-NTLVYHMVGVDVG-FENP 180
+DP R + + + + + + + +T + H + + + + VD+ N
Sbjct: 121 VDPFQRVICLHVYQGLLTIIPIFKSKKRFMTSHNNPSLHDNFSVRIQELNVVDIAMLYNS 180
Query: 181 MFACLEIDYEEADSDPTGEAAQKTQQTLTFYELDLGLNHVVRKYSEPLEEHANFLITVPG 240
L + Y+++ S + + E ++ + VV +EE +P
Sbjct: 181 SRPSLAVLYKDSKS-----IVHLSTYKINVREQEIDEDDVV---CHDIEEGK----LIPS 228
Query: 241 GNDGPSGVLICSENYLTYKNLGDQHD---IRCPIPRRRNDL-DDPERGMIFVCSATHKTK 296
N GV + E Y+ Y + Q + PI + +DPE G+
Sbjct: 229 EN---GGVFVFGEMYVYYISKDIQVSKLLLTYPITAFSPSISNDPETGL----------D 275
Query: 297 SMFFFLAQTEQGDIFKI-TIETDEDMVTEIKLKYFDTVPVATSMCVLKTGFLFVACEFGN 355
S + +A E G ++K + TDE ++L+ +A+ + L LFV F N
Sbjct: 276 SSIYIVAD-ESGMLYKFKALFTDE--TVSMELEKLGESSIASCLIALPDNHLFVGSHFNN 332
Query: 356 HYLYQIAHLGDEDDEPEFSSAMPLEEGDTFFFAPRPLRNLVLVDEMDSLSPILACHVADL 415
L Q+ + + + E L+ F P+ + ++ D+ S I+ C A
Sbjct: 333 SVLLQLPSITKNNHKLEI-----LQN----FVNIAPISDFIIDDDQTG-SSIITCSGAYK 382
Query: 416 AGEDTPQVYLACGRGPRSSLRALRHGLEVAEMAVSELPGSPNAVWTVRRNKDEEYDSYII 475
G +LR +R+ + + +A+ E+ G + R YD+YI
Sbjct: 383 DG----------------TLRIIRNSINIENVALIEMEGIKDFFSVSFR---ANYDNYIF 423
Query: 476 VSFVNATLVLSIG-ETVEEVTDSGFLGTTPTLSCHAMGNDALVQVYPDGIRHIRADKRVN 534
+S + T + + E V + GN ++Q+ IR + K+++
Sbjct: 424 LSLICETRAIIVSPEGVFSANHDLSCEESTIFVSTIYGNSQILQITTKEIR-LFDGKKLH 482
Query: 535 EWKAPGKKSIVRCAVNQRQVVIALTGGELVYFEMDPTGQLNEYTERKKLSSDVCCMALGS 594
W +P SI + V +A+ GG +++FE ++ Y C + S
Sbjct: 483 SWISP--MSITCGSSFADNVCVAVAGGLILFFE--GITEVGRYQ---------CDTEVSS 529
Query: 595 VAAGEQRAWFLAVGLNDNTVRIISLDPADCLSPRSMQALPAGAESLCIIEQPFESGAKSA 654
+ E+ ++ + D + D + +P S+ ++ + G
Sbjct: 530 LCFTEENVVYVGLWSADIIMLTYCQDGISLTHSLKLTDIP---RSIVYSQKYGDDGGT-- 584
Query: 655 LHLNIGLSNGVLLRTTLDSVSGDLADTRTRYLGSRPVKLFKVRVQAAEAVLAVSSRTWLG 714
L + +NG +L + R LG P+ L + A+ A+ + L
Sbjct: 585 --LYVSTNNGYVLMFNFQNGQVIEHSLRRNQLGVAPIILKHFDSKEKNAIFALGEKPQLM 642
Query: 715 YHYQNRFHLTPLSYECLEYAAGFSSEQCTEGIVAISSNTLRILALEKLGAVFNQTFVPLE 774
Y+ ++ +TPLS + + + + ++ +++ + + + ++ ++ QT V ++
Sbjct: 643 YYESDKLVITPLSCTEMLNISSYVNPSLGVNMLYCTNSYISLAKMSEIRSLNVQT-VSVK 701
Query: 775 YTPRKFIINSDNNHIIVLETDHNAYTEEMK 804
PR+ NS ++ ++ + + T+E +
Sbjct: 702 GFPRRICSNSLFYFVLCMQLEESIGTQEQR 731
Score = 39.1 bits (87), Expect = 0.004
Identities = 62/301 (20%), Positives = 126/301 (41%), Gaps = 35/301 (11%)
Query: 924 GSLHVYKIYGNTGKLELVHKTPVDEYPGAIAAFNGRLLAGVGRMLRLYDIGRRKLLRKCE 983
G L V+++ + +E+ + V + + ++AG+ + +++ + +
Sbjct: 787 GRLMVFEMTSDNN-IEMQAEHKVQGSVNTLVLYKHLIVAGINASVCIFEYEHGTMHVRNS 845
Query: 984 NRHIPNLIADIKTIGQRIFVSDVQESVFCVKHKKRENQLIIFADDTNPRWITNSCILDYD 1043
R P DI I +D+ +S+ ++ ++QLI A D +P W T+ IL
Sbjct: 846 IR-TPTYTIDISVNQDEIIAADLMKSITVLQFI--DDQLIEVARDYHPLWATSVEILSER 902
Query: 1044 TIAVSDKFGNVAIMRLPQSVSDDVDEDPTGNKALWDRGLLNGASQKGDVVVNFHVGETVT 1103
V++ GN A++ L +VS + + K W + F++GE +
Sbjct: 903 KYFVTEADGN-AVILLRDNVSPQLSD---RKKLRWYK--------------KFYLGELIN 944
Query: 1104 SLQRATLIPGGSEA-----LLYATISGSLGVLLPFTSREDHDFFQHLEMHMRSENSPLCG 1158
+ T I ++ LL AT+ GSL +++ + L+ ++R G
Sbjct: 945 KTRHCTFIEPQDKSLVTPQLLCATVDGSL-MIVGDAGMSNTPLLLQLQDNIRKVIPSFGG 1003
Query: 1159 RDHLSFRSY----YYPVKNVIDGDLCEQFNSL-DPGKQKAIAGDLERTPAEVSKKLEDIR 1213
H ++ Y ++IDG L E L +P + + G E T ++S ++D++
Sbjct: 1004 LSHKEWKEYRGENETSPSDLIDGSLIESILGLREPILNEIVNGGHEGTKLDIS--VQDLK 1061
Query: 1214 T 1214
+
Sbjct: 1062 S 1062
>SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1441
Score = 44.8 bits (101), Expect = 7e-05
Identities = 30/128 (23%), Positives = 63/128 (49%), Gaps = 2/128 (1%)
Query: 469 EYDSYIIVSFVNATLVLSIGETVEEVTDSGFLGTTPTLSCHA-MGNDALVQVYPDGIRHI 527
E ++Y+++S + + GET +EV S F + TL+ + + +VQ+ P +R
Sbjct: 585 ELETYLVLSKEKESFIFLAGETFDEVQHSDFSKDSKTLNVGSLLSGMRMVQICPTSLRVY 644
Query: 528 RADKRVNE-WKAPGKKSIVRCAVNQRQVVIALTGGELVYFEMDPTGQLNEYTERKKLSSD 586
++ R+ + + K+ +V ++ +++ GG + ++MD Q T+ + SD
Sbjct: 645 DSNLRLTQLFNFSKKQIVVSTSICDPCIIVVFLGGGIALYKMDLKSQRLIKTDLQNRLSD 704
Query: 587 VCCMALGS 594
V +L S
Sbjct: 705 VKTASLVS 712
>SPCC11E10.08 |rik1||silencing protein Rik1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1040
Score = 34.7 bits (76), Expect = 0.080
Identities = 82/421 (19%), Positives = 160/421 (38%), Gaps = 32/421 (7%)
Query: 392 LRNLVLVDEMDSLSPILACHVADLAGEDTPQVYLACGRGPRS-SLRALRHGLEVAEMAVS 450
L NL + ++DS+ + H + D + +L C PR+ SL +H L++ + +
Sbjct: 327 LINLSTLKDVDSIPNLGPIHDLLVLKNDIEKSFLVCAGTPRNASLIYFQHALKLDILGQT 386
Query: 451 ELPGSPNAVWTVRRNKDEEYDSYIIVSFVNATLVLSIGETVEEVTDSGFLGTTPTLSCHA 510
++ G A+ V + E + + F + T+ +I E + D T++
Sbjct: 387 KISGILRAM--VLPSYPEHK---LFLGFPSETVAFNIKEDFQLELDPSLSTKERTIALSG 441
Query: 511 MGNDALVQVYPDGIRHIRADKRVNEWKAPGKKSIVRCAVNQRQVVIALTGGELVYFEMDP 570
N VQV + + KR + + I A Q I + G L F+ D
Sbjct: 442 T-NGEFVQVTSTFLCIYDSAKRS---RLVYIEKITNAACYQEYSAIVINGTALAIFKKDT 497
Query: 571 TGQLNEYTERKKLSSDVCCMALGSVAAGEQRAWFLAVGLNDNTVRIISLDPADCLSPRSM 630
RK S++ C+ + + + VG V I++ +S
Sbjct: 498 E------VARKVFESEISCLDFSA-------QFQIGVGFWSKQVMILTFSDNSSISCAFQ 544
Query: 631 QALPAGAESLCIIEQPFESGAKSALHLNIGLSNGVLLRTTLDSVSGDLADTRTRYLGSRP 690
+P+ ++ I+E G L L + +G L +L + T++ G+ P
Sbjct: 545 TNVPSLPRNI-ILEGV---GVDRNLLL-VSSGSGEFKSYVL--FKNNLVFSETKHFGTTP 597
Query: 691 VKLFKVRVQAAEAVLAVSSRTWLGYHYQNRFHLTPLSYECLEYAAGFSSEQCTEGIVAIS 750
V + + ++ + + Y + PLS F + ++++S
Sbjct: 598 VSFRRFTMNIGTYIICNNDCPHMVYGFNGALCYMPLSMPQSYDVCQFRDNSGKDFLISVS 657
Query: 751 SNTLRILALEKLGAVFNQTFVPLEYTPRKFIINSDNNHIIVLETDHNAYTEEMKKHRRIQ 810
L+ L L L + + V LE+ P + II + + LE + Y E K++ ++
Sbjct: 658 LGGLKFLQLNPLPELTPRK-VLLEHVPLQAIIFQNKLLLRTLENRYEDY-ESYKENYHLE 715
Query: 811 M 811
+
Sbjct: 716 L 716
>SPBC23G7.06c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 745
Score = 30.7 bits (66), Expect = 1.3
Identities = 27/101 (26%), Positives = 45/101 (44%), Gaps = 9/101 (8%)
Query: 955 AFNGRLLAGVGRMLRLYDIGRRKLLRKCENRHIPNLIADIKTIGQRIFVSDVQESVFCVK 1014
AF GR+ G+ + + KL +K P ++ D+K I + V + +V +K
Sbjct: 213 AFIGRIFLGIHKTEGFKSLVVEKLTKKLSRIKTPGIMTDVKVID--VDVGEAIPTVNGLK 270
Query: 1015 HKKREN--QLIIFADDTNPRWITNSCILDYDTIAVSDKFGN 1053
+ N +LI+ AD W C +T A + KFG+
Sbjct: 271 FESLSNGGELIVSAD----IWYEGDCSFKAETTA-NIKFGS 306
>SPCC126.04c |||SAGA complex subunit Sgf73 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 344
Score = 30.3 bits (65), Expect = 1.7
Identities = 14/45 (31%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Query: 513 NDALVQVYPDGI-RHIRADKRVNEWKAPGKKSIVRCAVNQRQVVI 556
N+ ++ YPDG+ + + AD+RV+ ++ K I NQ Q+++
Sbjct: 18 NEQVLLKYPDGLPKDVLADQRVDNTESQVKDEITSNITNQTQILL 62
>SPAC3H8.05c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1073
Score = 29.5 bits (63), Expect = 3.0
Identities = 19/78 (24%), Positives = 33/78 (42%)
Query: 423 VYLACGRGPRSSLRALRHGLEVAEMAVSELPGSPNAVWTVRRNKDEEYDSYIIVSFVNAT 482
VY G G L +R+G + + L + N + E+ +++ +
Sbjct: 390 VYATAGIGKSGCLVTMRYGCSSTTLLEAILTEGAVLSGIINSNHNSEFYAWLTYPWQTQI 449
Query: 483 LVLSIGETVEEVTDSGFL 500
L L + VE+VT+S FL
Sbjct: 450 LRLHLDGVVEDVTESLFL 467
>SPCC663.12 |cid12||poly|Schizosaccharomyces pombe|chr 3|||Manual
Length = 336
Score = 29.1 bits (62), Expect = 4.0
Identities = 16/70 (22%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
Query: 123 IDPKGRAVMIGAIEKQKLVYILNRDAEARLTISSPLEAHKSNTLVYHMVGVDVGFENPMF 182
+D ++ +G +EK+++ +L + +A S + N + +GVD+ F N
Sbjct: 78 VDVSLKSPRVGELEKRRVTMVLRKYLDADADFHSSARVPRINLVDVSGIGVDLTFGNDK- 136
Query: 183 ACLEIDYEEA 192
AC + ++A
Sbjct: 137 ACRTAELQKA 146
>SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1526
Score = 29.1 bits (62), Expect = 4.0
Identities = 16/61 (26%), Positives = 31/61 (50%), Gaps = 3/61 (4%)
Query: 977 KLLRKCENRHIPNLIADIKTIGQRIFVSDVQESVF---CVKHKKRENQLIIFADDTNPRW 1033
KLL + N+H+ L +D + + ++ +F +HK++ NQL+ + T P +
Sbjct: 589 KLLAQSTNKHVATLFSDYQETETKTVRGRTKKGLFRTVAQRHKEQLNQLMNQFNSTQPHF 648
Query: 1034 I 1034
I
Sbjct: 649 I 649
>SPCC1020.01c |pma2|SPCC1393.01|P-type proton ATPase Pma2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1010
Score = 28.7 bits (61), Expect = 5.2
Identities = 15/48 (31%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Query: 104 QETFGKSGCRRIVPGQYLSIDPKGRAVMIGAIEKQKLVYILNRDAEAR 151
+E+ G +G ++VP + L DPK + +E++K Y LN+ E +
Sbjct: 149 EESPGPAGAAKVVPEELLETDPK-YGLTESEVEERKKKYGLNQMKEEK 195
>SPCC1259.10 |pgp1||metallopeptidase Pgp1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 412
Score = 28.7 bits (61), Expect = 5.2
Identities = 27/87 (31%), Positives = 37/87 (42%), Gaps = 5/87 (5%)
Query: 605 LAVGLNDNTVRIISLDPADCLSPRSMQALPAGAESLCIIEQPF----ESGAKSALHLNIG 660
LAVGLN + L L+ MQA + I+ P+ SG + L +
Sbjct: 134 LAVGLNTAKGLAVGLQKP-LLAVHHMQAHALAVQLEKSIDFPYLNILVSGGHTMLVYSNS 192
Query: 661 LSNGVLLRTTLDSVSGDLADTRTRYLG 687
L N ++ TT D GD D +YLG
Sbjct: 193 LLNHEIIVTTSDIAVGDYLDKCAKYLG 219
>SPBC1709.06 |dus2||tRNA dihydrouridine synthase Dus2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 479
Score = 27.9 bits (59), Expect = 9.2
Identities = 17/51 (33%), Positives = 22/51 (43%)
Query: 387 FAPRPLRNLVLVDEMDSLSPILACHVADLAGEDTPQVYLACGRGPRSSLRA 437
F PL L+ ++ S SP LA A L D + L CG S+ A
Sbjct: 74 FRVHPLEANRLIFQLGSASPELAVEAAKLVANDVAGIDLNCGCPKHFSVHA 124
>SPAC6F12.10c |ade3|min11|phosphoribosylformylglycinamidine synthase
Ade3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1323
Score = 27.9 bits (59), Expect = 9.2
Identities = 31/120 (25%), Positives = 61/120 (50%), Gaps = 13/120 (10%)
Query: 904 PHLVVG---VAKDLILSPR--SCTEGSLHVYKIYGNTGKLELVHKT---PVDEYPGAIAA 955
P+ VVG V + LIL+ R + T L + ++G K+ V +T P+ ++ ++ +
Sbjct: 578 PYGVVGYSTVEQRLILTDRLYNTTPIDLPMEVLFGKPPKMSRVAETQTIPLSKFDSSLKS 637
Query: 956 F----NGRLLAGVGRMLRLYDIGRRKLLRKCENRHIPNLIADIKTIGQ-RIFVSDVQESV 1010
+ + +L V R+LR+ + + L +R + LIA + +G ++ V+DV +V
Sbjct: 638 YLAPSSDPILDAVERVLRMPAVASKSFLITIGDRSVTGLIARDQMVGPWQVPVADVGVTV 697
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.320 0.136 0.403
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,670,961
Number of Sequences: 5004
Number of extensions: 248687
Number of successful extensions: 554
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 534
Number of HSP's gapped (non-prelim): 25
length of query: 1218
length of database: 2,362,478
effective HSP length: 81
effective length of query: 1137
effective length of database: 1,957,154
effective search space: 2225284098
effective search space used: 2225284098
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 59 (27.9 bits)
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