Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000829-TA|BGIBMGA000829-PA|IPR004871|CPSF A subunit,
C-terminal, IPR011046|WD40-like, IPR003006|Immunoglobulin/major
histocompatibility complex
(1218 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0296 + 1978565-1981197,1981216-1981639,1982280-1982771,198... 1346 0.0
05_07_0328 + 29286109-29286120,29286982-29287146,29288427-292885... 119 1e-26
07_01_0736 - 5600201-5600374,5600455-5600563,5601075-5601196,560... 80 9e-15
04_03_0036 - 9950353-9950379,9950753-9950791,9951021-9951194,995... 38 0.050
07_03_0627 - 20061951-20062391,20062912-20062960,20063386-200638... 36 0.15
02_05_1214 + 34976814-34979813 33 1.9
06_01_1053 - 8328902-8329156,8330538-8330804,8330895-8332343,833... 32 2.5
08_01_0901 - 8873905-8874076,8874674-8874786,8875388-8875522,887... 30 9.9
05_05_0226 + 23442971-23443857,23444209-23446324 30 9.9
>02_01_0296 + 1978565-1981197,1981216-1981639,1982280-1982771,
1982950-1983087
Length = 1228
Score = 1346 bits (3334), Expect = 0.0
Identities = 668/1242 (53%), Positives = 880/1242 (70%), Gaps = 43/1242 (3%)
Query: 1 MYLYNLTLQGSSAITHAVHGNFSG---------------TKQQEIIISRGKTLELLRPDP 45
MYLY+LTLQ ++ AV G+FSG + QEI ++RG TLELLRPDP
Sbjct: 1 MYLYSLTLQRATGAVCAVIGSFSGRDSKKSAASGSSSSSSSTQEIAVARGTTLELLRPDP 60
Query: 46 NTGKVHTFMKIEIFGVVRSIMAFRLTGGTKDYIVVGSDSGRIIILEYIPTKNILEKVHQE 105
TG++ T + +++FG +RS+ FRLTG TKDY+VVGSDSGR++ILEY P +N L+KVHQE
Sbjct: 61 ETGRLRTLLSVDVFGAIRSLAQFRLTGATKDYLVVGSDSGRLVILEYSPDRNRLDKVHQE 120
Query: 106 TFGKSGCRRIVPGQYLSIDPKGRAVMIGAIEKQKLVYILNRDAEARLTISSPLEAHKSNT 165
TFGKSGCRRIVPGQ L++DPKGRA+ I A+EKQKLVY+LNRDA ARLTISSPLEAHKSNT
Sbjct: 121 TFGKSGCRRIVPGQLLAVDPKGRALCIAALEKQKLVYVLNRDAAARLTISSPLEAHKSNT 180
Query: 166 LVYHMVGVDVGFENPMFACLEIDYEEADSDPTGEAAQKTQQTLTFYELDLGLNHVVRKYS 225
L + + +D GF+NP+FA +E++Y E+D DPTG+AA++ Q+ LTFYELDLGLNHV RK S
Sbjct: 181 LTFSLTALDCGFDNPVFAAIELEYAESDRDPTGQAAEQAQKHLTFYELDLGLNHVSRKAS 240
Query: 226 EPLEEHANFLITVPGGNDGPSGVLICSENYLTYKNLGDQHDIRCPIPRRRNDLDDPERGM 285
EP++ AN L+TVPGG DGPSG+L+C +N++ Y+N G ++R IPRR DL ERG+
Sbjct: 241 EPIDNGANLLVTVPGGGDGPSGLLVCCDNFVLYRNQGHP-EVRAVIPRRA-DLP-AERGV 297
Query: 286 IFVCSATHKTKSMFFFLAQTEQGDIFKITIETDEDMVTEIKLKYFDTVPVATSMCVLKTG 345
+ V +ATH+ KS+FFFL QTE GDIFK+ +E D VTE+++KYFDT+PV +++CVL++G
Sbjct: 298 LIVAAATHRQKSLFFFLLQTEYGDIFKVDLEHSNDTVTELRIKYFDTIPVTSAICVLRSG 357
Query: 346 FLFVACEFGNHYLYQIAHLG-DEDDEPEFSSAMPLEEG-DTFFFAPRPLRNLVLVDEMDS 403
FLF A EFGNH LYQ +G D D E ++ M +EG FF PR L+NL +DE++S
Sbjct: 358 FLFAASEFGNHALYQFRDIGRDVDVESSSATLMETDEGFQPVFFQPRALKNLYRIDEIES 417
Query: 404 LSPILACHVADLAGEDTPQVYLACGRGPRSSLRALRHGLEVAEMAVSELPGSPNAVWTVR 463
L PI+ VA+L E+TPQV+ ACGRGPRS+LR LR GL ++EMA S LP P AVWTV+
Sbjct: 418 LMPIMDMRVANLFDEETPQVFTACGRGPRSTLRILRPGLAISEMARSMLPAEPIAVWTVK 477
Query: 464 RNKDEEYDSYIIVSFVNATLVLSIGETVEEVTDSGFLGTTPTLSCHAMGNDALVQVYPDG 523
+N ++ +D+YI+VSF N TLVLSIGET+EEV+DS FL TT +L+ +G D+L+QV+P+G
Sbjct: 478 KNINDMFDAYIVVSFANVTLVLSIGETIEEVSDSQFLDTTHSLAVSLLGEDSLMQVHPNG 537
Query: 524 IRHIRADKRVNEWKAPGKKSIVRCAVNQRQVVIALTGGELVYFEMDPTGQLNEYTERKKL 583
IRHIR D RVNEW+ PGKK+I + N+ QVVIAL+GGEL+YFEMD TGQL E E++ +
Sbjct: 538 IRHIREDGRVNEWRTPGKKTITKVGSNRLQVVIALSGGELIYFEMDMTGQLME-VEKQDM 596
Query: 584 SSDVCCMALGSVAAGEQRAWFLAVGLNDNTVRIISLDPADCLSPRSMQALPAGAESLCII 643
S DV C+A+ V G QR+ FLAVG DNT+RI+S+DP DCL P S+Q++ + ESL +
Sbjct: 597 SGDVACLAIAPVPEGRQRSRFLAVGSFDNTIRILSVDPDDCLQPLSVQSVSSAPESLMFL 656
Query: 644 EQPFESGAKSA------LHLNIGLSNGVLLRTTLDSVSGDLADTRTRYLGSRPVKLFKVR 697
E G + L LN GL NGVL RT +D V+G L+DTR+R+LG RP KLF
Sbjct: 657 EVQASVGGEDGADHPANLFLNAGLQNGVLFRTNVDMVTGQLSDTRSRFLGLRPPKLFPCI 716
Query: 698 VQAAEAVLAVSSRTWLGYHYQNRFHLTPLSYECLEYAAGFSSEQCTEGIVAISSNTLRIL 757
V +A+L +SSR WLGY +Q F LTPLS + LE AA FSS+QC+EG+VA++ + LRI
Sbjct: 717 VSHRQAMLCLSSRPWLGYIHQGHFLLTPLSCDTLESAASFSSDQCSEGVVAVAGDALRIF 776
Query: 758 ALEKLGAVFNQTFVPLEYTPRKFIINSDNNHIIVLETDHNAYTEEMKKHRRIQM--AQEM 815
+E LG FN+T +PL YTPRKF+I ++ V+E+D A + E ++ + + A +
Sbjct: 777 TIEHLGETFNETAIPLRYTPRKFVILPKKKYLAVIESDKGALSAEEREAAKKECLEAAGV 836
Query: 816 REXXXXXXPEEQQLANEMAD-AFLSDTLPEYIFSSPKAGAGMWASLIRVVDMGIGGGQPN 874
E ++ + + D A +TLP+ + PKA + R++D +
Sbjct: 837 TENGNANNGDQMENGDGQEDGAEDRNTLPDEQYGYPKAESE------RILDPK----SRD 886
Query: 875 TLFRLPLEQNEAAVSLCIVRWAAHAEHAQPHLVVGVAKDLILSP-RSCTEGSLHVYKIYG 933
T L L+ NEAAVS+C V + H + L VG AK L P R+ + G +H+YK
Sbjct: 887 TTCLLELQDNEAAVSICTVNF--HDKEHGTLLAVGTAKGLQFWPKRNLSAGFIHIYKFVD 944
Query: 934 NTGKLELVHKTPVDEYPGAIAAFNGRLLAGVGRMLRLYDIGRRKLLRKCENRHIPNLIAD 993
LEL+HKT V+E P A+ F GRLLAGVG +LRLYD+G+RKLLRKCEN+ P I
Sbjct: 945 EGRSLELLHKTQVEEVPLALCQFQGRLLAGVGSVLRLYDLGKRKLLRKCENKLFPRTIVS 1004
Query: 994 IKTIGQRIFVSDVQESVFCVKHKKRENQLIIFADDTNPRWITNSCILDYDTIAVSDKFGN 1053
I T RI+V D+QES K+++ ENQL IFADD+ PRW+T + +D+DT+A +DKFGN
Sbjct: 1005 IHTYRDRIYVGDMQESFHYCKYRRDENQLYIFADDSVPRWLTAANHIDFDTMAGADKFGN 1064
Query: 1054 VAIMRLPQSVSDDVDEDPTGNKALWDRGLLNGASQKGDVVVNFHVGETVTSLQRATLIPG 1113
+ RLPQ +SD+++EDPTG K W++G LNGA K + +V FHVG+ VT LQ+A+LIPG
Sbjct: 1065 IYFARLPQDLSDEIEEDPTGGKIKWEQGKLNGAPNKVEEIVQFHVGDVVTCLQKASLIPG 1124
Query: 1114 GSEALLYATISGSLGVLLPFTSREDHDFFQHLEMHMRSENSPLCGRDHLSFRSYYYPVKN 1173
G E L+Y T+ GS+G LL FTSRED DFF HLEMH+R E+ PLCGRDH+++RS Y+PVK+
Sbjct: 1125 GGECLIYGTVMGSVGALLAFTSREDVDFFSHLEMHLRQEHPPLCGRDHMAYRSAYFPVKD 1184
Query: 1174 VIDGDLCEQFNSLDPGKQKAIAGDLERTPAEVSKKLEDIRTR 1215
VIDGDLCEQF SL Q+ IA +L+RTP E+ KKLEDIR +
Sbjct: 1185 VIDGDLCEQFPSLPADMQRKIADELDRTPGEILKKLEDIRNK 1226
>05_07_0328 +
29286109-29286120,29286982-29287146,29288427-29288589,
29288625-29288903,29289047-29289122,29289725-29289787,
29292116-29292164,29292413-29292504,29293017-29293068,
29293209-29293271,29293382-29293431,29293941-29294016,
29294444-29294656,29294763-29294869,29294966-29295074,
29295489-29295689,29295773-29296033,29296154-29296171,
29296287-29296397,29296755-29297030,29297108-29297382,
29297814-29298165,29298371-29298655,29298715-29299261,
29301658-29301781,29301871-29301946,29302062-29302136,
29302300-29302353,29302833-29302892,29302977-29303093,
29303228-29303361,29303480-29303682,29303879-29303976,
29304358-29304461,29304537-29304702,29304803-29304925,
29305047-29305129,29305217-29305358,29305523-29305549,
29305784-29305854,29305930-29306518
Length = 2046
Score = 119 bits (287), Expect = 1e-26
Identities = 125/535 (23%), Positives = 229/535 (42%), Gaps = 65/535 (12%)
Query: 301 FLAQTEQGDIFKITIETDEDMVTEIKLKYFDTVPVATSMCVLKTGFLFVACEFGNHYLYQ 360
+L G + + + + + VT +K++Y +A+S+ L G ++V FG+ L +
Sbjct: 467 YLLGDNAGILHLLVLTHERERVTGLKIEYLGETSIASSISYLDNGVVYVGSRFGDSQLVK 526
Query: 361 IAHLGDEDDEPEFSSAMPLEEGDTFFFAPRPLRNLVLVDEMDSLSPILACHVADLAGEDT 420
+ D P S LE +L PI+ V DL +
Sbjct: 527 LNLQAD----PNGSYVEVLER-------------------YVNLGPIVDFCVVDLDRQGQ 563
Query: 421 PQVYLACGRGPRSSLRALRHGLEVAEMAVSELPGSPNAVWTVRRNKDEEYDSYIIVSFVN 480
QV G SLR +R+G+ + E A EL G +W+++ + ++ YD Y++VSF++
Sbjct: 564 GQVVTCSGAFKDGSLRVVRNGIGINEQASVELQGI-KGLWSLKSSFNDPYDMYLVVSFIS 622
Query: 481 AT--LVLSIGETVEEVTDSGFLGTTPTLSCHAMGNDALVQV------------------- 519
T L +++ + +EE GF T TL C ND L+QV
Sbjct: 623 ETRFLAMNMEDELEETEIEGFDAQTQTLFCQNAINDLLIQVPFLITASFIFVAFLRQKVV 682
Query: 520 --YPDGIRHIRADKR--VNEWKAPGKKSIVRCAVNQRQVVIALTGGELVYFEMDPTGQLN 575
+ +R + R V++W AP S+ + N QV++A GG LVY E+ + +L
Sbjct: 683 SVTANSVRLVSCTSRELVDQWNAPEGFSVNVASANASQVLLATGGGHLVYLEIKDS-KLV 741
Query: 576 EYTERKKLSSDVCCMALGSVAAGEQRAWFLAVGL-NDNTVRIISLDPADCLSPRSM--QA 632
E + +L ++ C+ L + Q + AVG+ D +VRI+SL + + ++ +
Sbjct: 742 E-VKHIQLEHEISCVDLNPIGENPQYSSLAAVGMWTDISVRILSLPDLELIRKENLGGEI 800
Query: 633 LPAGAESLCIIEQPFESGAKSALHLNIGLSNGVLLRTTLDSVSGDLADTRTRYLGSRPVK 692
+P LC +E +L L +G L L++ +G+L D + LG++P+
Sbjct: 801 VPRSV-LLCTLE--------GVSYLLCALGDGHLFSFLLNASTGELTDRKKVSLGTQPIS 851
Query: 693 LFKVRVQAAEAVLAVSSRTWLGYHYQNRFHLTPLSYECLEYAAGFSSEQCTEGIVAISSN 752
L + V A S R + Y + + ++ + + + F++ + +
Sbjct: 852 LRTFSSKGTTHVFASSDRPTVIYSSNKKLLYSNVNLKEVNHMCPFNTAAIPDSLAIAKEG 911
Query: 753 TLRILALEKLGAVFNQTFVPLEYTPRKFIINSDNNHIIVLETDHNAYT-EEMKKH 806
L I ++ + + +T +PL R+ + + HN + EE + H
Sbjct: 912 ELSIGTIDDIQKLHIRT-IPLNEQARRICHQEQSRTLAFCSFKHNQTSIEESETH 965
Score = 56.8 bits (131), Expect = 1e-07
Identities = 72/300 (24%), Positives = 132/300 (44%), Gaps = 48/300 (16%)
Query: 922 TEGSLHVYKIYGNTGKLELVHKTPVDEYPGAIAAFNGRLLAGVGRMLRLY-----DIGRR 976
++G + V+ + G+L+L+ + ++ AFNG+LLA + + ++LY + G
Sbjct: 1020 SKGRILVFAV--EDGRLQLIVEKETKGAVYSLNAFNGKLLAAINQKIQLYKWMLREDGSH 1077
Query: 977 KLLRKCENRHIPNLIADIKTIGQRIFVSDVQESV---------FCVKHKKRENQLIIFAD 1027
+L +C H L +T G I V D+ +S+ F + + E+ + A
Sbjct: 1078 ELQSEC-GHHGHILALYTQTRGDFIVVGDLMKSISLLVYKLTFFFLFEQHEESAIEELAR 1136
Query: 1028 DTNPRWITNSCILDYDTIAVSDKFGNVAIMRLPQSVSDDVDEDPTGNKALWDRGLLNGAS 1087
D N W++ +LD D I + + N I + ++ DE +RG L
Sbjct: 1137 DYNANWMSAVEMLD-DEIYIGAE-NNYNIFTVRKNSDAATDE---------ERGRL---- 1181
Query: 1088 QKGDVVVNFHVGETVTSLQRATLI-------PGGSEALLYATISGSLGVLLPFTSREDHD 1140
+VV +H+GE V L+ +L+ G +++ TI+G +G++ E +
Sbjct: 1182 ---EVVGEYHLGEFVNRLRHGSLVMRLPDSEMGQIPTVIFGTINGVIGIIASL-PHEQYV 1237
Query: 1141 FFQHLEMHMRSENSPLCGRDHLSFRSYYYPVK-----NVIDGDLCEQFNSLDPGKQKAIA 1195
F + L+ + + H +RS++ K N +DGDL E F L K + +A
Sbjct: 1238 FLEKLQSTLVKFIKGVGNLSHEQWRSFHNDKKTSEARNFLDGDLIESFLDLSRNKMEEVA 1297
>07_01_0736 -
5600201-5600374,5600455-5600563,5601075-5601196,
5602859-5602935,5603349-5603487,5604306-5604618,
5605084-5605394,5607245-5609141,5609239-5609374,
5609519-5609607,5610424-5610507,5611112-5611191,
5611312-5611446,5612340-5612585
Length = 1303
Score = 80.2 bits (189), Expect = 9e-15
Identities = 40/128 (31%), Positives = 74/128 (57%), Gaps = 2/128 (1%)
Query: 395 LVLVDEMDSLSPILACHVADLAGEDTPQVYLACGRGPRSSLRALRHGLEVAEMAVSE-LP 453
LV + +++PIL +AD GE Q++ CG P SLR +R+G+ V ++ ++ +
Sbjct: 471 LVHKSAIQNVAPILDLAIADHHGEKQDQMFACCGMCPEGSLRVIRNGVNVEKLLRTDPIY 530
Query: 454 GSPNAVWTVRRNKDEEYDSYIIVSFVNATLVLSIGETVEEVTDS-GFLGTTPTLSCHAMG 512
+WT+R + + Y S++++SFV T +LS+G + ++ D+ GF TL+C +
Sbjct: 531 HGVTGLWTLRMKRTDAYHSFLVLSFVEETRILSVGLSFNDICDAVGFQTDVCTLACGLVA 590
Query: 513 NDALVQVY 520
+ LVQ++
Sbjct: 591 DGLLVQIH 598
Score = 55.2 bits (127), Expect = 3e-07
Identities = 46/173 (26%), Positives = 81/173 (46%), Gaps = 11/173 (6%)
Query: 1023 IIFADDTNPRWITNSCILDYDTIAVSDKFGNVAIMRLPQSVSDDVDEDPTGNKALWDRGL 1082
+I++D R + + +L +T VSD+ G+++++ P+ +V E P N A+
Sbjct: 1104 LIYSDPAQ-RLVGDVALLSCETAVVSDRRGSISVLSCPRL---EVSESPEKNLAV-HCSF 1158
Query: 1083 LNGASQKGDVVVNFHVGETVTSLQRATLIPGGSEALLYATISGSLGVLLPFTSREDHDFF 1142
G + V F + L L ++ +T+ GS+ V++P TS E+H
Sbjct: 1159 YMGETAMSIQKVAFKHWLPIDDLTEPVL-ESVYNCVVASTLLGSIFVMIPLTS-EEHQML 1216
Query: 1143 QHLE--MHMRSENSPLCGRDHLSFRSYYYP--VKNVIDGDLCEQFNSLDPGKQ 1191
Q ++ + + +PL G DH FR P V ++DGD+ QF L +Q
Sbjct: 1217 QDVQERLSVHPLTAPLLGNDHAEFRRRGIPSGVPPILDGDMLVQFLELTSEQQ 1269
Score = 51.2 bits (117), Expect = 5e-06
Identities = 49/213 (23%), Positives = 88/213 (41%), Gaps = 23/213 (10%)
Query: 604 FLAVGLNDNTVRIISLDPADCLSPRSMQALPA----GAESLCIIEQPFESGAKSALHLNI 659
F +G ++ +V IISL+P + ++ + G I + A + ++
Sbjct: 715 FAVIGTHEPSVHIISLEPGEAFQQLAVGHISVNNALGTPISGCIPENVRFVAAARFYILA 774
Query: 660 GLSNGVLLRTTLDSVSGDLA-------------DTR-----TRYLGSRPVKLFKVRVQAA 701
GL NG+LLR + G DT R +G PV L + +A
Sbjct: 775 GLRNGMLLRFESQTSKGHCFPGSFYKESSTPCDDTSLMLIAVRRIGITPVVLVPLHDRAN 834
Query: 702 EAVLAVSSRTWLGYHYQNRFHLTPLSYECLEYAAGFSSEQCTEGIVAISSNTLRILALEK 761
++ + R WL ++ + +S+ + SS C G++ +S N L ++ +
Sbjct: 835 ADIIVLGDRPWLLQSARHSLAYSSISFLPASHVTPVSSTDCPSGLLFVSENCLHLVEMVH 894
Query: 762 LGAVFNQTFVPLEYTPRKFIINSDNNHIIVLET 794
G N + TPRK + +SD+ ++VL T
Sbjct: 895 -GKRLNAQKFSIGGTPRKVLYHSDSRTLLVLRT 926
Score = 40.3 bits (90), Expect = 0.009
Identities = 35/146 (23%), Positives = 68/146 (46%), Gaps = 11/146 (7%)
Query: 2 YLYNLTLQGSSAITHAVHGNFSGTKQQEIIISRGKTLELLRPDPNTGKVHTFMKIEIFGV 61
YL L+GS A+ H G F ++++ + +LEL+ + G + + + FG+
Sbjct: 51 YLAKRVLRGS-AVLHVAQGCFRSPDCVDVVLCKENSLELVVIGED-GVLQSICEQTTFGI 108
Query: 62 VR--SIMAFRLTG-------GTKDYIVVGSDSGRIIILEYIPTKNILEKVHQETFGKSGC 112
++ ++ +R T K+ +V+ SDSG++ +L + + + K G
Sbjct: 109 IKDVGVLNWRCTHFGLMPKIEGKEILVILSDSGKLSLLYFCSEMHRFFAIANIELSKPGN 168
Query: 113 RRIVPGQYLSIDPKGRAVMIGAIEKQ 138
R G+ L+ID + R V + A E +
Sbjct: 169 LRHRLGRILAIDRESRFVAVSAYEDE 194
>04_03_0036 -
9950353-9950379,9950753-9950791,9951021-9951194,
9951287-9951415,9951782-9952012,9952655-9952732,
9953035-9953055,9953790-9953855,9953935-9954015,
9954148-9954920,9955461-9955654,9956723-9956817,
9958190-9958219,9958334-9958453,9959185-9959262,
9959428-9959505,9960459-9960488,9960614-9960739,
9961239-9961379,9963416-9963532,9963619-9963670,
9963759-9963890,9964668-9964720,9964816-9964911,
9965255-9965260,9965416-9965561,9966494-9966629,
9966885-9967038,9968017-9968154,9968268-9968614
Length = 1295
Score = 37.9 bits (84), Expect = 0.050
Identities = 33/117 (28%), Positives = 53/117 (45%), Gaps = 20/117 (17%)
Query: 428 GRGPRSSLRALRHGLEVAEMAVSELPGSPNAVWTV-------RRNKDEEYDSYIIVSFVN 480
G G SL L+ + + ELP S +WTV + +D EY +Y+I+S N
Sbjct: 589 GHGKNGSLSVLQQSIRPDLITEVELP-SCRGIWTVYYKSYRGQMAEDNEYHAYLIISLEN 647
Query: 481 AT----------LVLSIGETVEEVTDS--GFLGTTPTLSCHAMGNDALVQVYPDGIR 525
T +VL G+ + EVT++ F+ + + + G ++QVY G R
Sbjct: 648 RTMETCIGSFLGMVLETGDDLGEVTETVDYFVQASTIAAGNLFGRRRVIQVYGKGAR 704
>07_03_0627 - 20061951-20062391,20062912-20062960,20063386-20063851,
20063933-20064139,20064267-20064405,20065146-20065282,
20065414-20065657,20065808-20065969,20066049-20066167,
20066240-20066314,20066327-20066500,20066607-20066769,
20067211-20067420,20067515-20067668,20067761-20067839,
20067999-20068146,20068501-20068671,20068771-20069385
Length = 1250
Score = 36.3 bits (80), Expect = 0.15
Identities = 31/118 (26%), Positives = 56/118 (47%), Gaps = 13/118 (11%)
Query: 90 LEYIPTKNILEKVHQETFGKSGCRRIVPGQYLSIDPKGRAVMIGAIEKQKLV----YILN 145
L+ +P ++ Q S RR VP +++ P+ M+GA ++ +V Y L
Sbjct: 1065 LQNMPQVGVIHMALQNDSTGSILRRTVPAAHMT--PEDVRWMVGAWRERIIVCSGKYGLA 1122
Query: 146 R-------DAEARLTISSPLEAHKSNTLVYHMVGVDVGFENPMFACLEIDYEEADSDP 196
D+ A+ ISS +E S ++VYH + V+ EN F + + E++++P
Sbjct: 1123 HGLVKAFMDSGAKAVISSAMEPPDSQSIVYHGMEVNGSLENGKFVIADDEASESEAEP 1180
>02_05_1214 + 34976814-34979813
Length = 999
Score = 32.7 bits (71), Expect = 1.9
Identities = 16/41 (39%), Positives = 21/41 (51%)
Query: 469 EYDSYIIVSFVNATLVLSIGETVEEVTDSGFLGTTPTLSCH 509
E Y+ V V A V ++GETV EV + G TP + H
Sbjct: 258 EQMQYLYVRVVRARGVAAVGETVAEVKLGNYRGVTPATAAH 298
>06_01_1053 - 8328902-8329156,8330538-8330804,8330895-8332343,
8332461-8332619,8333246-8333372,8333444-8333775,
8333859-8334593,8334735-8335073,8335160-8335313,
8335405-8336154,8336242-8336372
Length = 1565
Score = 32.3 bits (70), Expect = 2.5
Identities = 24/73 (32%), Positives = 34/73 (46%), Gaps = 3/73 (4%)
Query: 521 PDGIRHIRADKRVNEWKAPGKKSIVRCA--VNQRQVVIALTGGELVYFEMDPTGQLNEYT 578
PD + +IR+ R W A G KS V A ++ R V+ +T EL FE D + +Y
Sbjct: 1314 PDELYYIRSLSRCKRWSAQGGKSNVYFAKTLDDRFVIKQVTRTELDSFE-DYAAEYFKYL 1372
Query: 579 ERKKLSSDVCCMA 591
S C+A
Sbjct: 1373 TESVSSGSPTCLA 1385
>08_01_0901 - 8873905-8874076,8874674-8874786,8875388-8875522,
8875661-8875792,8876136-8876301,8877154-8877248,
8878983-8879104,8879283-8879403,8879556-8879633,
8879730-8879991,8880196-8880366,8881070-8881710
Length = 735
Score = 30.3 bits (65), Expect = 9.9
Identities = 15/53 (28%), Positives = 29/53 (54%)
Query: 960 LLAGVGRMLRLYDIGRRKLLRKCENRHIPNLIADIKTIGQRIFVSDVQESVFC 1012
++ G G M + + +R L+++C+NR IP + ++ T R+ V E + C
Sbjct: 508 VIQGAGGMHLIDPLFQRLLVKECKNRKIPVIFDEVFTGFWRLGVESASELLGC 560
>05_05_0226 + 23442971-23443857,23444209-23446324
Length = 1000
Score = 30.3 bits (65), Expect = 9.9
Identities = 26/74 (35%), Positives = 33/74 (44%), Gaps = 7/74 (9%)
Query: 337 TSMCVLKTGFLFVA--CEFGNHYLYQIAHLGDEDDE----PEFSSAMPLEEGDTFFFAPR 390
+S +L T VA C GN Y+YQ+ LG+ED + P F S LE+G
Sbjct: 322 SSRIILTTTIQSVANMCSHGNGYVYQMNTLGEEDSKELAFPGFRSP-ELEQGSASLLGKC 380
Query: 391 PLRNLVLVDEMDSL 404
L LV D L
Sbjct: 381 DGLPLALVSVSDYL 394
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.320 0.136 0.403
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 36,863,767
Number of Sequences: 37544
Number of extensions: 1658149
Number of successful extensions: 3079
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 3047
Number of HSP's gapped (non-prelim): 22
length of query: 1218
length of database: 14,793,348
effective HSP length: 90
effective length of query: 1128
effective length of database: 11,414,388
effective search space: 12875429664
effective search space used: 12875429664
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 65 (30.3 bits)
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