Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000829-TA|BGIBMGA000829-PA|IPR004871|CPSF A subunit,
C-terminal, IPR011046|WD40-like, IPR003006|Immunoglobulin/major
histocompatibility complex
(1218 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_12239| Best HMM Match : CPSF_A (HMM E-Value=1.2) 677 0.0
SB_46407| Best HMM Match : CPSF_A (HMM E-Value=3.8e-11) 164 4e-40
SB_57383| Best HMM Match : No HMM Matches (HMM E-Value=.) 77 9e-14
SB_11717| Best HMM Match : No HMM Matches (HMM E-Value=.) 70 1e-11
SB_54215| Best HMM Match : No HMM Matches (HMM E-Value=.) 43 0.001
SB_47303| Best HMM Match : CPSF_A (HMM E-Value=0) 37 0.087
SB_52352| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.15
SB_47874| Best HMM Match : Keratin_B2 (HMM E-Value=4.9) 35 0.46
SB_22182| Best HMM Match : DUF1626 (HMM E-Value=1.7) 32 2.5
SB_40561| Best HMM Match : Keratin_B2 (HMM E-Value=1.1) 30 10.0
SB_27305| Best HMM Match : MFMR (HMM E-Value=0.53) 30 10.0
>SB_12239| Best HMM Match : CPSF_A (HMM E-Value=1.2)
Length = 864
Score = 677 bits (1672), Expect = 0.0
Identities = 322/421 (76%), Positives = 361/421 (85%), Gaps = 21/421 (4%)
Query: 1 MYLYNLTLQGSSAITHAVHGNFSGTKQQEIIISRGKTLELLRPDPNTGKVHTFMKIEIFG 60
M+LY LTLQ +SAI + +HGNFSGTKQQEI++SRGK +ELLR DPNTGKV + IE+FG
Sbjct: 1 MHLYALTLQRASAINNTIHGNFSGTKQQEIVVSRGKFVELLRTDPNTGKVFPVLAIEMFG 60
Query: 61 VVRSIMAFRLTGGTKDYIVVGSDSGRIIILEYIPTKNILEKVHQETFGKSGCRRIVPGQY 120
+VR ++AFRLTGG+KD+IVVGSDSGRI+ILEYIP+KN+ EKVHQETFGKSGCRRIVPGQY
Sbjct: 61 IVRDLIAFRLTGGSKDFIVVGSDSGRIVILEYIPSKNVFEKVHQETFGKSGCRRIVPGQY 120
Query: 121 LSIDPKGRAVMIGAIEKQKLVYILNRDAEARLTISSPLEAHKSNTLVYHMVGVDVGFENP 180
L+ DPKGRA+MIGAIEKQKLVYI+NRD+ ARLTISSPLEAHKS+TLVYHMVGVD GFENP
Sbjct: 121 LAADPKGRAIMIGAIEKQKLVYIMNRDSAARLTISSPLEAHKSHTLVYHMVGVDAGFENP 180
Query: 181 MFACLEIDYEEADSDPTGEAAQKTQQTLTFYELDLGLNHVVRKYSEPLEEHANFLITVPG 240
MFACLE+DYEEAD+D TGEAAQ TQQTLTFYELDLGLNHVVRKYSEPLEEH N LI VPG
Sbjct: 181 MFACLEMDYEEADTDHTGEAAQTTQQTLTFYELDLGLNHVVRKYSEPLEEHGNLLIAVPG 240
Query: 241 GNDGPSGVLICSENYLTYKNLGDQHDIRCPIPRRRNDLDDPERGMIFVCSATHKTKSMFF 300
G+DGPSGVL+CSENYLTYKN GDQ DIR PIPRR KSMFF
Sbjct: 241 GSDGPSGVLVCSENYLTYKNFGDQPDIRMPIPRR---------------------KSMFF 279
Query: 301 FLAQTEQGDIFKITIETDEDMVTEIKLKYFDTVPVATSMCVLKTGFLFVACEFGNHYLYQ 360
FL QTEQGDIFKIT+ETDEDMVTEI++KYFDTVP A SMCVLKTGFLF A EFGNHYLYQ
Sbjct: 280 FLVQTEQGDIFKITLETDEDMVTEIRMKYFDTVPPAVSMCVLKTGFLFTASEFGNHYLYQ 339
Query: 361 IAHLGDEDDEPEFSSAMPLEEGDTFFFAPRPLRNLVLVDEMDSLSPILACHVADLAGEDT 420
IAHLGD+DDE EFSS M LEEG TFFF PR L+NLVLVDE++SL+PI+ C V+++A +
Sbjct: 340 IAHLGDDDDELEFSSTMELEEGTTFFFQPRGLKNLVLVDELESLAPIMNCQVSEMAVSEL 399
Query: 421 P 421
P
Sbjct: 400 P 400
Score = 348 bits (855), Expect = 2e-95
Identities = 167/226 (73%), Positives = 196/226 (86%), Gaps = 6/226 (2%)
Query: 443 EVAEMAVSELPGSPNAVWTVRRNKDEEYDSYIIVSFVNATLVLSIGETVEEVTDSGFLGT 502
+V+EMAVSELPG+PNAVWTV+ +E+D+YI+VSF+NATLVLSIGETVEEVTDSGFLGT
Sbjct: 390 QVSEMAVSELPGNPNAVWTVKHTTADEFDAYIVVSFINATLVLSIGETVEEVTDSGFLGT 449
Query: 503 TPTLSCHAMGNDALVQVYPDGIRHIRADKRVNEWKAPGKKSIVRCAVNQRQVVIALTGGE 562
TPTLSC +G +ALVQ+YPDGIRHIRADKRVNEWKAPGKK+IV+ AVN+RQVVIALTGGE
Sbjct: 450 TPTLSCSQLGEEALVQIYPDGIRHIRADKRVNEWKAPGKKTIVKSAVNERQVVIALTGGE 509
Query: 563 LVYFEMDPTGQLNEYTERKKLSSDVCCMALGSVAAGEQRAWFLAVGLNDNTVRIISLDPA 622
+VYFEMD +GQLNEYTERK++S+DV CMALG++ GE R+ FLA+GL+DNTVRIISLDP
Sbjct: 510 VVYFEMDSSGQLNEYTERKEMSADVQCMALGTILHGELRSRFLAIGLSDNTVRIISLDPQ 569
Query: 623 DCLSPRSMQALPAGAESLCIIEQPFESGAKS------ALHLNIGLS 662
DCL+P SMQALPA ESLCI+E + GA+S L LNIGLS
Sbjct: 570 DCLTPLSMQALPAMPESLCIVEMGGKEGAESEGGSMGGLFLNIGLS 615
Score = 244 bits (597), Expect = 3e-64
Identities = 135/257 (52%), Positives = 172/257 (66%), Gaps = 23/257 (8%)
Query: 703 AVLAVSSRTWLGYHYQNRFHLTPLSYECLEYAAGFSSEQCTEGIVAISSNTLRILALEKL 762
+VLA+SSR+WL Y +Q+R HLTPLSYE LEYA+GFSSEQC EGIVAI+ NTLRILALEKL
Sbjct: 615 SVLAMSSRSWLSYTHQSRVHLTPLSYETLEYASGFSSEQCPEGIVAIAGNTLRILALEKL 674
Query: 763 GAVFNQTFVPLEYTPRKFIINSDNNHIIVLETDHNAYTEEMKKHRRIQMAQEMREXXXXX 822
GAVFNQ PL+YTPRKF+I+S N ++V+ETDHN YT+ ++ R+ QMA+EM E
Sbjct: 675 GAVFNQVATPLKYTPRKFVIHSPTNTLVVIETDHNTYTDAAREERKQQMAEEMVEMASE- 733
Query: 823 XPEEQQLANEMADAFLSDTLPEYIFSSPKAGAGMWASLIRVVDMGIGGGQPNTLFRLPLE 882
EE++LA + A FLS+ L E F SPKAG GMWAS+IRV+D G T + L+
Sbjct: 734 --EEKELAAQAAAEFLSEELSEQQFGSPKAGTGMWASVIRVLDPIKG----ETHDVVQLD 787
Query: 883 QNEAAVSLCI--------VRWAA-----HAEHAQPHLVVGVAKDLILSPRSCTEGSLHVY 929
QNEAA S+C+ R++ A ++VG AKD+ LSPRSC+ G L+ Y
Sbjct: 788 QNEAAFSVCVRVFIDRLFFRYSVCVCSFSARPDDTFVIVGTAKDMALSPRSCSTGYLYAY 847
Query: 930 KIYGNTG---KLELVHK 943
++ KLE HK
Sbjct: 848 RLVQQPSGGIKLEFQHK 864
>SB_46407| Best HMM Match : CPSF_A (HMM E-Value=3.8e-11)
Length = 242
Score = 164 bits (398), Expect = 4e-40
Identities = 75/148 (50%), Positives = 106/148 (71%), Gaps = 5/148 (3%)
Query: 889 SLCIVRWAAHAEHAQPHLVVGVAKDLILSPRSCTEGSLHVYKIYGNTG---KLELVHKTP 945
S+C+ ++A + ++VG AKD+ LSPRSC+ G L+ Y++ KLE HKT
Sbjct: 51 SVCVCSFSARPDDT--FVIVGTAKDMALSPRSCSTGYLYAYRLVQQPSGGIKLEFQHKTE 108
Query: 946 VDEYPGAIAAFNGRLLAGVGRMLRLYDIGRRKLLRKCENRHIPNLIADIKTIGQRIFVSD 1005
VD+ P A+ F GRLLAG+GR+LR+YDIG++K+LRKCEN+ +PN I +I ++G RI VSD
Sbjct: 109 VDDVPAALEPFQGRLLAGIGRLLRVYDIGKKKMLRKCENKKLPNFICNINSMGTRIVVSD 168
Query: 1006 VQESVFCVKHKKRENQLIIFADDTNPRW 1033
+QES VK+K R+NQL++FADD NP +
Sbjct: 169 IQESFHFVKYKPRDNQLVVFADDVNPSY 196
>SB_57383| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 46
Score = 77.0 bits (181), Expect = 9e-14
Identities = 34/46 (73%), Positives = 41/46 (89%)
Query: 1173 NVIDGDLCEQFNSLDPGKQKAIAGDLERTPAEVSKKLEDIRTRYAF 1218
+V+DGDLCE +NSLD K++ IA +L+RTPAEVSKKLEDIRTRYAF
Sbjct: 1 SVVDGDLCEHYNSLDYSKRRTIAEELDRTPAEVSKKLEDIRTRYAF 46
>SB_11717| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 173
Score = 70.1 bits (164), Expect = 1e-11
Identities = 30/47 (63%), Positives = 41/47 (87%)
Query: 1091 DVVVNFHVGETVTSLQRATLIPGGSEALLYATISGSLGVLLPFTSRE 1137
+ + N+ VGETV SLQ+ATLIPGGSE+L++ T+SG +G+L+PFTSRE
Sbjct: 127 ETMCNYFVGETVLSLQKATLIPGGSESLVFTTLSGGVGMLVPFTSRE 173
Score = 61.3 bits (142), Expect = 5e-09
Identities = 26/36 (72%), Positives = 29/36 (80%)
Query: 1057 MRLPQSVSDDVDEDPTGNKALWDRGLLNGASQKGDV 1092
+RLP SDDVDEDPTG KA WDRGLLNGA QK ++
Sbjct: 56 VRLPSGSSDDVDEDPTGTKAFWDRGLLNGAQQKREM 91
Score = 38.7 bits (86), Expect = 0.028
Identities = 14/22 (63%), Positives = 18/22 (81%)
Query: 1033 WITNSCILDYDTIAVSDKFGNV 1054
W+T C LDYDT+A +DKFGN+
Sbjct: 2 WLTCCCYLDYDTLAGADKFGNI 23
>SB_54215| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 695
Score = 43.2 bits (97), Expect = 0.001
Identities = 47/164 (28%), Positives = 69/164 (42%), Gaps = 28/164 (17%)
Query: 397 LVDEMDSLSPILACHVADLAGEDTPQVYLACGRGPRSSLRALRHGLEVAEMAVSELPGSP 456
+++ +L PI+ V DL + Q+ G SLR +R+G+ + E A +L G
Sbjct: 289 VMETFTNLGPIVDMVVVDLERQGQGQLVTCSGAKKEGSLRIIRNGIGIHEHATIDLAG-- 346
Query: 457 NAVWTVRRNKDEEYDSYIIVSFVNATLVLSIGETVEEVTDSGFLGTTPTLSCHAMGNDAL 516
I+V L LS GE VEE GF T + L
Sbjct: 347 -----------------IMV------LSLS-GEEVEETEIPGFSDDQQTYYSGNVTGAQL 382
Query: 517 VQVYPDGIRHIRADKR--VNEWKAPGKKSIVRCAVNQRQVVIAL 558
+QV +R + + R V+EWK P K+I + N QVV A+
Sbjct: 383 IQVTAASVRLVNCETRQLVSEWKHPSAKNISVASCNTEQVVAAV 426
Score = 39.5 bits (88), Expect = 0.016
Identities = 27/124 (21%), Positives = 60/124 (48%), Gaps = 1/124 (0%)
Query: 656 HLNIGLSNGVLLRTTLDSVSGDLADTRTRYLGSRPVKLFKVRVQAAEAVLAVSSRTWLGY 715
+L L +G L T+D +G LA+ + LG++P L + + V A S R + Y
Sbjct: 444 YLLCALGDGTLFYFTMDPSTGALAECKKVTLGTQPTMLRTFKSLSTVNVFACSDRPTVIY 503
Query: 716 HYQNRFHLTPLSYECLEYAAGFSSEQCTEGIVAISSNTLRILALEKLGAVFNQTFVPLEY 775
++ + ++ + + + +S+ + + + +L I ++++ + +T VPL
Sbjct: 504 SSNHKLVFSNVNLKEVNFMCPLNSQGYPDSLALANDGSLTIGTIDEIQKLHIRT-VPLGE 562
Query: 776 TPRK 779
+PR+
Sbjct: 563 SPRR 566
Score = 34.3 bits (75), Expect = 0.61
Identities = 25/88 (28%), Positives = 44/88 (50%), Gaps = 6/88 (6%)
Query: 4 YNLTLQGSSAITHAVHGNFSGTKQQEIIISRGKTLELLRPDPNTGKVHTFMKIEIFGVVR 63
Y +T Q +A+ AV GNF+G ++I++ LE+ P + + + ++G V
Sbjct: 5 YVVTAQKPTAVNAAVVGNFTGPDDLNLVIAKNTRLEIHLVTPE--GLRPMLDVGLYGSVG 62
Query: 64 SIMAFRLTGGTKDYIVVGSDSGRIIILE 91
+ FR D I SD+G+I I++
Sbjct: 63 VMELFR----PPDRIGRPSDTGQIGIID 86
>SB_47303| Best HMM Match : CPSF_A (HMM E-Value=0)
Length = 1291
Score = 37.1 bits (82), Expect = 0.087
Identities = 26/106 (24%), Positives = 50/106 (47%), Gaps = 13/106 (12%)
Query: 467 DEEYDSYIIVSFVNATLVLSIGETVEEVTDSGFLGTTPTLSCHAMGNDALVQVYP----- 521
+E+Y S++I+S +++++L + + EV SGF T+ GN + + P
Sbjct: 180 NEKYHSFLILSREDSSMILKTEQEIMEVDQSGFSTQCATIYAGNFGNGSYILQLPCISEV 239
Query: 522 DGIRHIRADKRVNEWKAPGKKSIVRCAVNQRQVVIALTGGELVYFE 567
+ ++HI D G +IV C+V V+ + G ++ E
Sbjct: 240 NQLQHIPMDS--------GLSNIVWCSVCDPYAVLLMADGSVILIE 277
>SB_52352| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 645
Score = 36.3 bits (80), Expect = 0.15
Identities = 24/80 (30%), Positives = 44/80 (55%), Gaps = 5/80 (6%)
Query: 58 IFGVVRSIMAFRLTGGTKDYIVVGSDSGRIIILEYIPTKNILE--KVH--QETFGKSGCR 113
+FG + S+ A RL G T+D +++ ++ I++Y P K+ ++ +H ++ KS C
Sbjct: 364 LFGNIESLHAIRLAGNTRDSLLMSFKDAKLSIVDYDPGKHDIKTRSLHFFEDEKIKSHCL 423
Query: 114 RIVPGQYLSIDPKGR-AVMI 132
+ IDP+ R AVM+
Sbjct: 424 AQDRAPVVRIDPERRCAVML 443
>SB_47874| Best HMM Match : Keratin_B2 (HMM E-Value=4.9)
Length = 253
Score = 34.7 bits (76), Expect = 0.46
Identities = 14/56 (25%), Positives = 27/56 (48%)
Query: 742 CTEGIVAISSNTLRILALEKLGAVFNQTFVPLEYTPRKFIINSDNNHIIVLETDHN 797
C + + ++TL I+ L ++N T + +P + S +H ++ TDHN
Sbjct: 146 CNHTLTTMCNHTLTIMCNHTLTTMYNHTLTTILQSPTDHHVQSHTDHHVLSNTDHN 201
>SB_22182| Best HMM Match : DUF1626 (HMM E-Value=1.7)
Length = 357
Score = 32.3 bits (70), Expect = 2.5
Identities = 38/131 (29%), Positives = 59/131 (45%), Gaps = 8/131 (6%)
Query: 580 RKKLSSDVCCMALGSVAAGEQRAWFLAVGLNDNTVRIISLDPADCLSPRSMQALPAGAES 639
RK SS+ +ALG+ E R WFL V D + I+ CL +++ +GA
Sbjct: 141 RKIFSSEERYLALGTTIDLENRRWFL-VKKTDIVLHIVK---GFCLMSKTI--FFSGARE 194
Query: 640 LCIIEQPFESGAKSALHLNIGLSNGVLLRTTLDSVSGDLADTRTRYLGSRPVKLFKVRVQ 699
+ Q + + AK L+ +S+ V + + + +LA T R K+ K RV
Sbjct: 195 IFKQGQRWLTQAKEYYELDGHVSDYVQIEQDVSQLYKELAKLETD--KERKCKMHKRRVD 252
Query: 700 AAEAVLAVSSR 710
AVLA S +
Sbjct: 253 VLCAVLADSMK 263
>SB_40561| Best HMM Match : Keratin_B2 (HMM E-Value=1.1)
Length = 1139
Score = 30.3 bits (65), Expect = 10.0
Identities = 20/76 (26%), Positives = 35/76 (46%), Gaps = 4/76 (5%)
Query: 274 RRNDLDDPERGMIFVC-SATHKTKSMFFFLAQTEQGDIFKITIETDED---MVTEIKLKY 329
R+ L P + ++ C S HK F F + + G+IF+I I M + +K+KY
Sbjct: 63 RKAKLFLPVKTSVYRCVSKEHKNMRCFLFHSVSTSGEIFEILICKSHVIGWMTSSLKIKY 122
Query: 330 FDTVPVATSMCVLKTG 345
+ + + + K G
Sbjct: 123 YQSANIVEFDVLTKNG 138
>SB_27305| Best HMM Match : MFMR (HMM E-Value=0.53)
Length = 823
Score = 30.3 bits (65), Expect = 10.0
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 3/50 (6%)
Query: 290 SATHKTKSMFFFLAQTEQGDIFKITIETDED---MVTEIKLKYFDTVPVA 336
S HK K F F + + G+ F+I I M + +K+KY+ T +A
Sbjct: 710 SKEHKNKRCFLFHSVSTSGEFFEILICKSHVIGWMTSSLKIKYYQTANIA 759
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.320 0.136 0.403
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 41,843,123
Number of Sequences: 59808
Number of extensions: 1825263
Number of successful extensions: 3528
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 3501
Number of HSP's gapped (non-prelim): 25
length of query: 1218
length of database: 16,821,457
effective HSP length: 90
effective length of query: 1128
effective length of database: 11,438,737
effective search space: 12902895336
effective search space used: 12902895336
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 65 (30.3 bits)
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