GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000829-TA|BGIBMGA000829-PA|IPR004871|CPSF A subunit,
C-terminal, IPR011046|WD40-like, IPR003006|Immunoglobulin/major
histocompatibility complex
         (1218 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY170874-1|AAO34131.1| 1221|Anopheles gambiae alkali metal ion/p...    25   9.1  
AB090813-1|BAC57901.1|  724|Anopheles gambiae gag-like protein p...    25   9.1  

>AY170874-1|AAO34131.1| 1221|Anopheles gambiae alkali metal
           ion/proton exchanger 3 protein.
          Length = 1221

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 12/34 (35%), Positives = 21/34 (61%), Gaps = 2/34 (5%)

Query: 350 ACEFGNHYLYQIAHLGDEDDEPEFSSAMPLEEGD 383
           A +F N Y+ ++ H  +ED+E +  +A P E+ D
Sbjct: 874 AKQFANDYINEVLHEDNEDEERQ--AAGPSEDWD 905


>AB090813-1|BAC57901.1|  724|Anopheles gambiae gag-like protein
           protein.
          Length = 724

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 15/67 (22%), Positives = 28/67 (41%), Gaps = 1/67 (1%)

Query: 802 EMKKHRRIQMAQEMREXXXXXXPEEQQLANEMADAFLSDTLPEYIFSSPKAGAGMWASLI 861
           ++++ R+ Q  Q+ ++        +QQ   +          PE I  SP  G   W SL+
Sbjct: 455 QLRQQRQQQQPQQQQQQRPQQQRPQQQRPQQQRSQQRKPAKPELIEVSPNEGQD-WESLL 513

Query: 862 RVVDMGI 868
            +V   +
Sbjct: 514 LLVQTAV 520


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.320    0.136    0.403 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,288,802
Number of Sequences: 2123
Number of extensions: 55830
Number of successful extensions: 204
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 204
Number of HSP's gapped (non-prelim): 2
length of query: 1218
length of database: 516,269
effective HSP length: 72
effective length of query: 1146
effective length of database: 363,413
effective search space: 416471298
effective search space used: 416471298
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 53 (25.4 bits)