Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000829-TA|BGIBMGA000829-PA|IPR004871|CPSF A subunit,
C-terminal, IPR011046|WD40-like, IPR003006|Immunoglobulin/major
histocompatibility complex
(1218 letters)
Database: celegans
27,539 sequences; 12,573,161 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF043699-3|AAB97566.1| 1220|Caenorhabditis elegans Temporarily a... 1515 0.0
Z68507-3|CAA92824.2| 1134|Caenorhabditis elegans Hypothetical pr... 83 9e-16
AC024211-6|AAF36067.2| 1454|Caenorhabditis elegans Hypothetical ... 57 7e-08
Z12017-8|CAD62040.1| 211|Caenorhabditis elegans Hypothetical pr... 31 6.6
>AF043699-3|AAB97566.1| 1220|Caenorhabditis elegans Temporarily
assigned gene nameprotein 203 protein.
Length = 1220
Score = 1515 bits (3755), Expect = 0.0
Identities = 718/1227 (58%), Positives = 926/1227 (75%), Gaps = 16/1227 (1%)
Query: 1 MYLYNLTLQGSSAITHAVHGNFSGT-KQQEIIISRGKTLELLRPDPNTGKVHTFMKIEIF 59
M+LYNLTLQG SAI A+ GNFSGT K QEI++ RG LELL D TGK+ +IF
Sbjct: 1 MHLYNLTLQGQSAINQAIQGNFSGTPKAQEIVVGRGSALELLTLDTVTGKIKVMCHQDIF 60
Query: 60 GVVRSIMAFRLTGGTKDYIVVGSDSGRIIILEYIPTKNILEKVHQETFGKSGCRRIVPGQ 119
G+VRS++AFRLT GT+D+I VGSDSGRI+IL+Y K E++HQETFGK+GCRRIVPG
Sbjct: 61 GIVRSLLAFRLTAGTRDFIAVGSDSGRIVILQYNAEKTCFERLHQETFGKTGCRRIVPGH 120
Query: 120 YLSIDPKGRAVMIGAIEKQKLVYILNRDAEARLTISSPLEAHKSNTLVYHMVGVDVGFEN 179
+L DP+GRA+MIGA+E+QKLVYI+NRD+EA LTISSPLEAHK +TL Y MVG+DVGFEN
Sbjct: 121 FLVGDPRGRALMIGAVERQKLVYIMNRDSEAHLTISSPLEAHKHHTLCYAMVGIDVGFEN 180
Query: 180 PMFACLEIDYEEADSDPTGEAAQKTQQTLTFYELDLGLNHVVRKYSEPLEEHANFLITVP 239
P FACLE DYE+AD+DPTGEAA++TQQTLTFYELDLGLNHVVRKY+EPL + N LI VP
Sbjct: 181 PTFACLEFDYEDADNDPTGEAAKRTQQTLTFYELDLGLNHVVRKYAEPLNDPGNLLIAVP 240
Query: 240 GGNDGPSGVLICSENYLTYKNLGDQHDIRCPIPRRRNDLDDPERGMIFVCSATHKTKSMF 299
GGNDGPSGV++C ENYL YKNLGDQ DIRCPIPRRRN+LDD +R M+ + +ATHKTK+M+
Sbjct: 241 GGNDGPSGVIVCCENYLVYKNLGDQPDIRCPIPRRRNELDDADRTMLIIATATHKTKNMY 300
Query: 300 FFLAQTEQGDIFKITIETDEDMVTEIKLKYFDTVPVATSMCVLKTGFLFVACEFGNHYLY 359
FFL Q E GDIFK+T+ETDED+V+E+KLKYFDTVP A ++C+LK+GFLFVA EFGNH LY
Sbjct: 301 FFLVQAENGDIFKVTLETDEDLVSEMKLKYFDTVPPANALCILKSGFLFVAAEFGNHELY 360
Query: 360 QIAHLGDEDDEPEFSSAMPLEEGDTFFFAPRPLRNLVLVDEMDSLSPILACHVADLAGED 419
QIA LG+ DD+ EFSSAM E D FF P L++L+ +D MDSLSP+ + D+A ED
Sbjct: 361 QIASLGEGDDD-EFSSAMGFGENDAAFFEPHELKSLIPIDSMDSLSPLTDAVIGDIARED 419
Query: 420 TPQVYLACGRGPRSSLRALRHGLEVAEMAVSELPGSPNAVWTVRRNKDEEYDSYIIVSFV 479
Q+Y GRG RSSL+ LR+GLE++EMAVS+LPG+PNAVWTV++N +++YDSYI+VSFV
Sbjct: 420 AAQIYSLVGRGARSSLKVLRNGLEISEMAVSDLPGNPNAVWTVKKNIEDQYDSYIVVSFV 479
Query: 480 NATLVLSIGETVEEVTDSGFLGTTPTLSCHAMGNDALVQVYPDGIRHIRADKRVNEWKAP 539
NATL L+IG+TVEE +DSGFL TTPT+ C +G+D+LVQ+Y +GIRHIRADKR+NEWKAP
Sbjct: 480 NATLALTIGDTVEEASDSGFLPTTPTIGCAMIGDDSLVQIYSEGIRHIRADKRINEWKAP 539
Query: 540 GKKSIVRCAVNQRQVVIALTGGELVYFEMDPTGQLNEYTERKKLSSDVCCMALGSVAAGE 599
++ IV+CAVN+RQV +ALTGGELVYFE+D G LNE+TERK ++D+ CM ++ GE
Sbjct: 540 PRRQIVKCAVNRRQVAVALTGGELVYFELDLNGTLNEFTERKLFNADIACMTFSEISEGE 599
Query: 600 QRAWFLAVGLNDNTVRIISLDPADCLSPRSMQALPAGAESLCIIEQPFESG-AKSALHLN 658
+ FLA+G DN VRIISLDP D L P S Q+LP ES+ +I+ P E G +A+HLN
Sbjct: 600 LNSRFLALGTVDNAVRIISLDPNDMLMPLSTQSLPCPPESILLIDTPNEDGKGVAAVHLN 659
Query: 659 IGLSNGVLLRTTLDSVSGDLADTRTRYLGSRPVKLFKVRVQAAEAVLAVSSRTWLGYHYQ 718
IGL NG L R T+D+V+G + DTRTRYLG+RPVKLFKV+ Q A+L SSR+WL YH+Q
Sbjct: 660 IGLQNGCLFRNTVDNVTGAIMDTRTRYLGTRPVKLFKVQCQGRSAILCTSSRSWLLYHFQ 719
Query: 719 NRFHLTPLSYECLEYAAGFSSEQCTEGIVAISSNTLRILALEKLGAVFNQTFVPLEYTPR 778
RFHLTPLSY LEYAA F S QC+EGIVAIS++TLRI+A EKLG FN + TPR
Sbjct: 720 RRFHLTPLSYANLEYAASFCSNQCSEGIVAISASTLRIIAAEKLGVAFNVQSFEHKMTPR 779
Query: 779 KFIINSDNNHIIVLETDHNAYTEEMKKHRRIQMAQEMREXXXXXXPEEQQLANEMADAFL 838
+ ++ +IV+ETDH +YTE K +R QMA ++ E QLA E+A
Sbjct: 780 RVAVHPSMPCLIVIETDHASYTEVTKNIKRNQMAADVE--AMASDETEAQLAQEIATNLR 837
Query: 839 SDTLPEYIFSSPKAGAGMWASLIRVVDMGIGGGQPNTLFRLPLEQNEAAVSLCIVRWAAH 898
L E ++ +P+A G WAS I ++ G + F LP ++N V+L V+++ H
Sbjct: 838 ERRLDERVYGAPRAARGKWASAISLI--SATSGDKLSYFELPQDENAKCVAL--VQFSKH 893
Query: 899 AEHAQPHLVVGVAKDL---ILSPRSC----TEGSLHVYKIYGNTGKLELVHKTPVDEYPG 951
A + GV + L + P T G ++ + + N + + +H+T G
Sbjct: 894 PNEAMVLVGCGVNEVLNVHDIDPNDTSIRPTRGCVYTFHLSANGDRFDFLHRTETPLPVG 953
Query: 952 AIAAFNGRLLAGVGRMLRLYDIGRRKLLRKCENRHIPNLIADIKTIGQRIFVSDVQESVF 1011
AI F G L G GR LR+YDIG++KLL KCEN++ P I +I++ GQRI VSD QESV
Sbjct: 954 AIHDFRGMALVGFGRFLRMYDIGQKKLLAKCENKNFPVSIVNIQSTGQRIIVSDSQESVH 1013
Query: 1012 CVKHKKRENQLIIFADDTNPRWITNSCILDYDTIAVSDKFGNVAIMRLPQSVSDDVDEDP 1071
++++K +NQL++FADDT PR++T C+LDY T+AV+DKFGN+A++RLP+ V++DV +DP
Sbjct: 1014 FLRYRKGDNQLVVFADDTTPRYVTCVCVLDYHTVAVADKFGNLAVVRLPERVNEDVQDDP 1073
Query: 1072 TGNKALWDRGLLNGASQKGDVVVNFHVGETVTSLQRATLIPGGSEALLYATISGSLGVLL 1131
T +K++WDRG LNGASQK ++V NF +G+T+TSLQ+ +L+PG +EAL+Y TI G++G L+
Sbjct: 1074 TVSKSVWDRGWLNGASQKVELVSNFFIGDTITSLQKTSLMPGANEALVYTTIGGAIGCLV 1133
Query: 1132 PFTSREDHDFFQHLEMHMRSENSPLCGRDHLSFRSYYYPVKNVIDGDLCEQFNSLDPGKQ 1191
F S+++ DFF +LEMH+RSE PLCGRDHL++RSYY P K+VIDGD+CEQF+ +D KQ
Sbjct: 1134 SFMSKDEVDFFTNLEMHVRSEYPPLCGRDHLAYRSYYAPCKSVIDGDICEQFSLMDTQKQ 1193
Query: 1192 KAIAGDLERTPAEVSKKLEDIRTRYAF 1218
K +A +L +T +E+SKKLEDIRTRYAF
Sbjct: 1194 KDVAEELGKTVSEISKKLEDIRTRYAF 1220
>Z68507-3|CAA92824.2| 1134|Caenorhabditis elegans Hypothetical
protein M18.5 protein.
Length = 1134
Score = 83.4 bits (197), Expect = 9e-16
Identities = 163/776 (21%), Positives = 308/776 (39%), Gaps = 104/776 (13%)
Query: 4 YNLTLQGSSAITHAVHGNFSGTKQQEIIISRGKTLELLRPDPNTGKVHTFMKIEIFGVVR 63
Y ++ + +S + +V GNF+G + +I++RG +++ P K +I I+G V
Sbjct: 5 YCVSAKKASVVVESVVGNFTGHENVNLIVARGNRIDVQLVSPEGLK--NVCEIPIYGQVL 62
Query: 64 SIMAFRLTGGTKDYIVVGSDSGRIIILEYIPTKNILEKVHQETFGKSGCRRIVPGQYLSI 123
+I + + ++V ++ + IL Y K + +GC
Sbjct: 63 TIALVKCKRDKRHSLIVVTEKWHMAILAYRDGKVVTRA--------AGC---------IA 105
Query: 124 DPKGRA---VMIGAIEKQKLVYILNRDAEARLTISSPLEAHKSNTLVYHMVGVDVGFENP 180
DP GRA + I + L+ I + ++ +S T + H +V F+ P
Sbjct: 106 DPTGRATDNLFSLTIHRNGLIAIRAFEGSVKMI------QWESGTDLRHF---NVRFDYP 156
Query: 181 MFACLE-IDYEEADSDPTGEAAQKTQ-QTLTFYELDLGLNHVVRKYSEPLEEHANFLITV 238
+ + +D E D + L F +L++ + R YS A+ + +
Sbjct: 157 NVSDFKFVDTGEDDVYRVAFIYDDDHGKHLQFSDLNMH-DKEFRTYSRQASIAADSSVLI 215
Query: 239 PGGNDGPSGVLICSENYLTYK---NLGDQHDIRCPIPRRRNDLDDPERGMIFVCSATHKT 295
P + GV++ N + YK NLG+ C + F C
Sbjct: 216 PVPH-AIGGVIVLGSNSVLYKPNDNLGEVVPYTCSLLENTT----------FTCHGIVDA 264
Query: 296 KSMFFFLAQTEQGDIFKITIETDEDM----VTEIKLKYFDTVPVATSMCVLKTGFLFVAC 351
F L+ T+ G + + + E V E+++ Y +A S+ + G +FV
Sbjct: 265 SGERFLLSDTD-GRLLMLLLNVTESQSGYTVKEMRIDYLGETSIADSINYIDNGVVFVGS 323
Query: 352 EFGNHYLYQIAHLGDEDDEPEFSSAMPLEEGDTFFFAPRPLRNLVLVDEMDSLSPILACH 411
G+ L ++ EP S + E + P+R++V+V E D ++ C
Sbjct: 324 RLGDSQLIRLM------TEPNGGSYSVILET---YSNIGPIRDMVMV-ESDGQPQLVTCT 373
Query: 412 VADLAGEDTPQVYLACGRGPRSSLRALRHGLEVAEMAVSELPGSPNAVWTVRRNKDEEYD 471
AD G SLR +R+G+ + E+A +L G ++ +R D D
Sbjct: 374 GADKDG----------------SLRVIRNGIGIDELASVDLAGVVG-IFPIRL--DSNAD 414
Query: 472 SYIIVSFVNATLVLSI-GETVEEVTDSGFLGTTPTLSCHAM--GNDA--LVQVYPDGIRH 526
+Y+IVS + T VL I GE +E+V PT+ + ND+ ++Q IR
Sbjct: 415 NYVIVSLSDETHVLQITGEELEDVKLLEINTDLPTIFASTLFGPNDSGIILQATEKQIRL 474
Query: 527 IRADKRVNEWKAPGKKSIVRCAVNQRQVVIALTGGELVYFE---MDPTGQLN-EYTERKK 582
+ + W+ + I + +VN I L + VY +D G L+ + T KK
Sbjct: 475 MSSSGLSKFWEPTNGEIISKVSVNAANGQIVLAARDTVYLLTCIVDEMGALDIQLTAEKK 534
Query: 583 LSSDVCCMALGSVAAG-EQRAWFLAVGL-NDNTVRIISLDP--ADCLSPRSMQALPAGAE 638
+++ C+ L + +A FL + + + +I L C + + +P
Sbjct: 535 FENEIACLDLSNEGDDPNNKATFLVLAFWSTFAMEVIQLPDLITVCHTDLPTKIIPRSII 594
Query: 639 SLCIIEQPFESGAKSALHLNIGLSNGVLLRTTLDSVSGDLADTRTRYLGSRPVKLFKVRV 698
+ CI E + L + +G L+ D +G + + +G+RP L +VR
Sbjct: 595 ATCIEEVHY---------LLVAFGDGALVYYVFDIKTGTHGEPKKSNVGTRPPSLHRVRN 645
Query: 699 QAAEAVLAVSSRTWLGYHYQNRFHLTPLSYECLEYAAGFSSEQCTEGIVAISSNTL 754
+ + + S R + + + + ++ + ++ SS + +V N++
Sbjct: 646 KNRQHLFVCSDRPVIIFSASKKLVFSNVNVKLVDTVCSLSSSAYRDCLVISDGNSM 701
Score = 62.5 bits (145), Expect = 2e-09
Identities = 68/296 (22%), Positives = 126/296 (42%), Gaps = 37/296 (12%)
Query: 937 KLELVHKTPVDEYPGAIAAFNGRLLAGVGRMLRLYDIGRRKLLR-KCEN-RHIPNLIADI 994
KL VH+ V P AI NG+L+A + +RL++ K LR +C + H+ + D+
Sbjct: 852 KLRRVHELVVRGSPLAIRILNGKLVAAINSSIRLFEWTTDKELRLECSSFNHV--IALDL 909
Query: 995 KTIGQRIFVSDVQESVFCVKHKKRENQLIIFADDTNPRWITNSCILDYDTIAVSDKFGNV 1054
K + + + V+DV SV + ++ E A D N +W+ + ++I + N+
Sbjct: 910 KVMNEEVAVADVMRSVSLLSYRMLEGNFEEVAKDWNSQWMVTCEFITAESILGGEAHLNL 969
Query: 1055 AIMRLPQS--VSDD--VDEDPTGNKALWDRGLLNGASQKGDVVVNFHVGETVTSLQRATL 1110
+ + ++ ++DD +PTG W G L + +V+ Q
Sbjct: 970 FTVEVDKTRPITDDGRYVLEPTG---YWYLGELPKVMTRSTLVI-----------QPEDS 1015
Query: 1111 IPGGSEALLYATISGSLGVLLPFTSREDHDFFQHLEMHMRSENSPLCGRDHLSFRSYYY- 1169
I S+ +++ T G++G+++ + F +E + +H S+R++ +
Sbjct: 1016 IIQYSQPIMFGTNQGTIGMIVQIDDKW-KKFLIAIEKAIADSVKNCMHIEHSSYRTFVFQ 1074
Query: 1170 ----PVKNVIDGDLCEQFNSLDPG---------KQKAIAGDLERTPAEVSKKLEDI 1212
P +DGDL E +D K L R P E+ K +ED+
Sbjct: 1075 KRAEPPSGFVDGDLVESILDMDRSVAMDILSKVSDKGWDPSLPRDPVEILKVIEDL 1130
>AC024211-6|AAF36067.2| 1454|Caenorhabditis elegans Hypothetical
protein Y76B12C.7 protein.
Length = 1454
Score = 57.2 bits (132), Expect = 7e-08
Identities = 42/154 (27%), Positives = 73/154 (47%), Gaps = 5/154 (3%)
Query: 426 ACGRGPRSSLRALRHGLEVAEMAVSELPGSPNAVWTVRRNKDEEYDSYIIVSFVNATLVL 485
A G G +L + L E+ S L +W V R ++E + Y+IVS V +TL+L
Sbjct: 482 ASGHGKNGALCVHQRSLR-PEIITSSLLEGAEQLWAVGRKENESH-KYLIVSRVRSTLIL 539
Query: 486 SIGETVEEVTDSGFLGTTPTLSCHAMGNDAL-VQVYPDGIRHIRADKRVNEWKAPGKKSI 544
+GE + E+ + F+ PT++ + AL VQV I + +++ E +
Sbjct: 540 ELGEELVELEEQLFVTGEPTVAAGELSQGALAVQVTSTCIALVTDGQQMQEVHIDSNFPV 599
Query: 545 VRCAVNQRQVVIALTGGELVYFE--MDPTGQLNE 576
++ ++ V + G L+ +E M+P QL E
Sbjct: 600 IQASIVDPYVALLTQNGRLLLYELVMEPYVQLRE 633
>Z12017-8|CAD62040.1| 211|Caenorhabditis elegans Hypothetical
protein R08D7.8 protein.
Length = 211
Score = 30.7 bits (66), Expect = 6.6
Identities = 15/56 (26%), Positives = 27/56 (48%)
Query: 410 CHVADLAGEDTPQVYLACGRGPRSSLRALRHGLEVAEMAVSELPGSPNAVWTVRRN 465
C+V +L + +AC R SS+ H L++A++ + E N +T+ N
Sbjct: 125 CNVLNLLLRHSKAAIVACTRRNESSIECFEHHLKMAKLEIVEKFEYENGAYTIGEN 180
Database: celegans
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 12,573,161
Number of sequences in database: 27,539
Lambda K H
0.320 0.136 0.403
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 30,884,999
Number of Sequences: 27539
Number of extensions: 1379707
Number of successful extensions: 2721
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 2702
Number of HSP's gapped (non-prelim): 8
length of query: 1218
length of database: 12,573,161
effective HSP length: 90
effective length of query: 1128
effective length of database: 10,094,651
effective search space: 11386766328
effective search space used: 11386766328
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 65 (30.3 bits)
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