GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000829-TA|BGIBMGA000829-PA|IPR004871|CPSF A subunit,
C-terminal, IPR011046|WD40-like, IPR003006|Immunoglobulin/major
histocompatibility complex
         (1218 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    26   2.1  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    26   2.1  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    26   2.1  
AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    25   5.0  

>AY739659-1|AAU85298.1|  288|Apis mellifera
            hyperpolarization-activated ion channelvariant T protein.
          Length = 288

 Score = 25.8 bits (54), Expect = 2.1
 Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 2/47 (4%)

Query: 1025 FADDTNPRWITNSCILDYDTIAVSDKFGNVAIMRLPQSVSDDVDEDP 1071
            F DD + RWI  +C+   DTI + D   N     + Q  ++ V  DP
Sbjct: 113  FNDDLSTRWIAFNCL--SDTIFLIDIVVNFRTGIMQQDNAEQVILDP 157


>AY739658-1|AAU85297.1|  664|Apis mellifera
            hyperpolarization-activated ion channelvariant L protein.
          Length = 664

 Score = 25.8 bits (54), Expect = 2.1
 Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 2/47 (4%)

Query: 1025 FADDTNPRWITNSCILDYDTIAVSDKFGNVAIMRLPQSVSDDVDEDP 1071
            F DD + RWI  +C+   DTI + D   N     + Q  ++ V  DP
Sbjct: 113  FNDDLSTRWIAFNCL--SDTIFLIDIVVNFRTGIMQQDNAEQVILDP 157


>AY280848-1|AAQ16312.1|  632|Apis mellifera
            hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 25.8 bits (54), Expect = 2.1
 Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 2/47 (4%)

Query: 1025 FADDTNPRWITNSCILDYDTIAVSDKFGNVAIMRLPQSVSDDVDEDP 1071
            F DD + RWI  +C+   DTI + D   N     + Q  ++ V  DP
Sbjct: 113  FNDDLSTRWIAFNCL--SDTIFLIDIVVNFRTGIMQQDNAEQVILDP 157


>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 24.6 bits (51), Expect = 5.0
 Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 6/36 (16%)

Query: 419 DTPQVYLACGRGPRSSLRALRHGLEVAEMAVSELPG 454
           +TPQ+ +  G GP+  LR+L  G+ V    V +LPG
Sbjct: 325 NTPQLLMLSGIGPKEHLRSL--GIPV----VVDLPG 354


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.320    0.136    0.403 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 347,140
Number of Sequences: 429
Number of extensions: 15107
Number of successful extensions: 27
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 26
Number of HSP's gapped (non-prelim): 4
length of query: 1218
length of database: 140,377
effective HSP length: 66
effective length of query: 1152
effective length of database: 112,063
effective search space: 129096576
effective search space used: 129096576
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 49 (23.8 bits)