Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000828-TA|BGIBMGA000828-PA|IPR008994|Nucleic
acid-binding, OB-fold, IPR001208|MCM, IPR008049|MCM protein 6
(799 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_52330| Best HMM Match : MCM (HMM E-Value=0) 332 8e-91
SB_43377| Best HMM Match : No HMM Matches (HMM E-Value=.) 250 4e-66
SB_54665| Best HMM Match : No HMM Matches (HMM E-Value=.) 226 6e-59
SB_32060| Best HMM Match : No HMM Matches (HMM E-Value=.) 200 5e-51
SB_56664| Best HMM Match : bZIP_1 (HMM E-Value=0.00033) 190 3e-48
SB_53807| Best HMM Match : MCM (HMM E-Value=0) 179 9e-45
SB_6324| Best HMM Match : MCM (HMM E-Value=0) 146 8e-35
SB_55518| Best HMM Match : MCM (HMM E-Value=8.6e-19) 139 7e-33
SB_6119| Best HMM Match : MCM (HMM E-Value=3.6e-13) 122 1e-27
SB_12515| Best HMM Match : No HMM Matches (HMM E-Value=.) 51 3e-06
SB_53376| Best HMM Match : DUF498 (HMM E-Value=5.7) 42 0.002
SB_11767| Best HMM Match : Kinesin (HMM E-Value=0) 37 0.073
SB_53111| Best HMM Match : Complex1_30kDa (HMM E-Value=2.6) 34 0.51
SB_19075| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.68
SB_2190| Best HMM Match : SGS (HMM E-Value=2.5) 33 0.68
SB_53812| Best HMM Match : LANC_like (HMM E-Value=4.9e-17) 33 0.90
SB_12218| Best HMM Match : PHK_AB (HMM E-Value=2.2e-07) 32 2.1
SB_19024| Best HMM Match : Thiolase_C (HMM E-Value=5.4e-36) 31 2.7
SB_35452| Best HMM Match : UK (HMM E-Value=5.7) 31 3.6
SB_33291| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 4.8
SB_1573| Best HMM Match : Thiolase_C (HMM E-Value=1.6e-40) 31 4.8
SB_38457| Best HMM Match : zf-C2H2 (HMM E-Value=0) 30 6.3
SB_19130| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 8.4
SB_50178| Best HMM Match : F5_F8_type_C (HMM E-Value=0.6) 30 8.4
>SB_52330| Best HMM Match : MCM (HMM E-Value=0)
Length = 368
Score = 332 bits (815), Expect = 8e-91
Identities = 169/259 (65%), Positives = 199/259 (76%), Gaps = 27/259 (10%)
Query: 292 FGTAELPTHDLTTEDMRKQMTDKEWDKVYEMSRDRNLYNNLITSLFPSIHGNNEVKRGVL 351
FG +L D+T E ++KQMT +EW K+YEMSRD+NLY N+I S+FP+IHGN+EVKRGVL
Sbjct: 22 FGGKDLDGDDMTAEAIKKQMTPQEWQKIYEMSRDKNLYQNIINSIFPTIHGNDEVKRGVL 81
Query: 352 LMLFGGVAKTTIEGTTLRGDINVCIVGDPSTAKSQLLKQVSEITPRAVYTSGKASSAAGL 411
LMLFGGV K T+E T+LRGDIN+C+VGDPSTAKSQ LK V E + RAVYTSGKASSAAGL
Sbjct: 82 LMLFGGVPKKTLEKTSLRGDINICVVGDPSTAKSQFLKHVEEFSARAVYTSGKASSAAGL 141
Query: 412 TAAVVRDEESFDFVIEAGALMLADNGVCCIDEFDKMDPGDQVAIHEAMEQQTISLAKAGV 471
TAAVV+DEES +FVIEAGA+MLADNGVCCIDEFDKMDP DQVAIHEAMEQQTISL KAGV
Sbjct: 142 TAAVVKDEESSEFVIEAGAMMLADNGVCCIDEFDKMDPRDQVAIHEAMEQQTISLTKAGV 201
Query: 472 RATLNARTSILAAANPIGGRYDRAKSLQQNVALSPPIMSRFDLFFILIDESSEMVDYAIA 531
+ LN + PI R+ DLFFIL+DE +E+VDYAIA
Sbjct: 202 KQNLN-------MSAPIMSRF--------------------DLFFILVDECNEVVDYAIA 234
Query: 532 RKIVDLHCNKEESYDCVYS 550
R+IVDLH +E+S + VY+
Sbjct: 235 RRIVDLHSRREQSVERVYA 253
Score = 83.4 bits (197), Expect = 6e-16
Identities = 40/83 (48%), Positives = 62/83 (74%), Gaps = 3/83 (3%)
Query: 717 GMHKSAVVSWYLEQLVAQGQIESEDELLERKTLVEKVIDRLMYHDQVIIPLSTTGLRGTQ 776
G+ +S VV+WYL ++ Q +IE+E+EL E+K LV+KV+DRL+++D VI+ L + +
Sbjct: 288 GLRRSRVVNWYLGEI--QSEIETEEELAEKKMLVDKVLDRLIHNDGVILELKSWKESDKE 345
Query: 777 KSSEQD-IEDDPLLVVHPNYVVD 798
K E+D E+DPLLVVHPNY+++
Sbjct: 346 KEGEKDEEEEDPLLVVHPNYLLE 368
Score = 50.4 bits (115), Expect = 6e-06
Identities = 23/30 (76%), Positives = 24/30 (80%)
Query: 621 VTPAHVHEAYRLLNKSIIRVEQPDIHLDED 650
V P HV EAYRLLNKSIIRVE PDI DE+
Sbjct: 255 VEPKHVKEAYRLLNKSIIRVETPDIQFDEE 284
>SB_43377| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 625
Score = 250 bits (611), Expect = 4e-66
Identities = 196/630 (31%), Positives = 311/630 (49%), Gaps = 92/630 (14%)
Query: 3 VADTYAT--QSQVKDEVGIRCQKLFQDFLEEFKEDN-EIKYEKHAKELLKPELSTLEVSF 59
V+D + + QS +D + +K F++FL EF E Y K+ LEV
Sbjct: 11 VSDPFGSEDQSDERDLNRVSAKKRFKEFLREFHEGTFAFPYRDQLKQHYNLGQYYLEVDL 70
Query: 60 DDVEKYNQNLATTIIE---EYYRIYPFLNRAILNYILSLAETGMKKDLQDKECYVSFVDV 116
+D+ +++NLA + + EY ++ + + + + G ++++QD + ++
Sbjct: 71 EDLSSFDENLADKLRKNPSEYLPLFETAAKEVADEVTRPRPIG-EEEVQDVQ--ITLRSG 127
Query: 117 PTRHKVRELTTAKIGTLIRISGQIVRTHPVHPELVQGTF--------------------Y 156
++REL + + L++I G I+ + + T Y
Sbjct: 128 ANPFQIRELRSEHMAALVKIPGIIISASSIRSKATNITIQCRSCQNTISSIPLKPGLEGY 187
Query: 157 TIPTICRN-----PVCANRRRFMLDADKSVFVDFQKIRIQETQAELPRGCIPRSLEVILR 211
+P C P C F++ DK VDFQ +++QE+ +P G +PR +++
Sbjct: 188 AMPRKCPTDQTGRPPCPLDPFFIMP-DKCKCVDFQVLKLQESPDAVPNGEMPRHMQLYCD 246
Query: 212 AEAVESVQAGDRYDFTGTLIVVPDVGALSMPGSRAEITTRTKLANEGQMEGIKGLKALGV 271
E V G+R V +G S+ K+A + E + +G+
Sbjct: 247 RYLTERVVPGNR---------VTVIGIYSIK----------KVAQKANKE--RDAIGVGI 285
Query: 272 RELHYKTAFLACSVQAVSRRFGTAELPTHDLTTEDMRKQMTDKEWDKVYEMSRDRNLYNN 331
R+ + + + + R G P + E+ R+ T + V
Sbjct: 286 RKPYLRVVGIYVDTEGPGRSTGA---PMNPADEEEFRRLATRPDVADV------------ 330
Query: 332 LITSLFPSIHGNNEVKRGVLLMLFGGVAKTTIEGTTLRGDINVCIVGDPSTAKSQLLKQV 391
+ S+ PSI+G+ ++K+ + +LFGG K +G T RGDINV ++GDP TAKSQLLK V
Sbjct: 331 IARSIAPSIYGSVDIKKCIACLLFGGSRKRLPDGLTRRGDINVLLLGDPGTAKSQLLKFV 390
Query: 392 SEITPRAVYTSGKASSAAGLTAAVVRDEESFDFVIEAGALMLADNGVCCIDEFDKMDPGD 451
+++P VYTSGK SSAAGLTA+V+RD S +FV+E GA++LAD GV CIDEFDKM D
Sbjct: 391 EKVSPIGVYTSGKGSSAAGLTASVMRDPVSRNFVMEGGAMVLADGGVVCIDEFDKMREDD 450
Query: 452 QVAIHEAMEQQTISLAKAGVRATLNARTSILAAANPIGGRYDRAKSLQ------------ 499
+VAIHEAMEQQTIS+AKAG+ TLN+R ++LAAAN + GR+D K Q
Sbjct: 451 RVAIHEAMEQQTISIAKAGITTTLNSRCAVLAAANSVFGRWDDTKGDQVCPSVTQLTYYY 510
Query: 500 -----QNVALSPPIMSRFDLFFILIDESSEMVDYAIARKIVDLHCNKEESYDC---VYSR 551
N+ P I+SRFD FI+ DE ++ D +A+ ++ +H N ++ S
Sbjct: 511 RAIAGHNIDFMPTILSRFDTIFIVKDEHNQAKDIHLAKHVMQVHLNAAQTTQANEGELSL 570
Query: 552 DDLLRYIAFARS-FKPVITEEAGKLLVEYY 580
L +YI++ +S P ++E A + L Y
Sbjct: 571 SFLKKYISYCKSKCGPRLSESAAEKLKNRY 600
>SB_54665| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 573
Score = 226 bits (552), Expect = 6e-59
Identities = 107/213 (50%), Positives = 147/213 (69%)
Query: 326 RNLYNNLITSLFPSIHGNNEVKRGVLLMLFGGVAKTTIEGTTLRGDINVCIVGDPSTAKS 385
++++ L SL PSIHG+ +K+ VL +L GG K GT LRGDIN+ ++GDPSTAKS
Sbjct: 82 KDVFEVLAKSLAPSIHGHEFIKKAVLCLLLGGTEKVLENGTRLRGDINILLIGDPSTAKS 141
Query: 386 QLLKQVSEITPRAVYTSGKASSAAGLTAAVVRDEESFDFVIEAGALMLADNGVCCIDEFD 445
Q+L+ V PRA+ T+G+ SS GLTAAV D E+ D +EAGA++LAD GV CIDEFD
Sbjct: 142 QMLRYVLHSAPRAIPTTGRGSSGVGLTAAVTTDPETGDRRLEAGAMVLADRGVVCIDEFD 201
Query: 446 KMDPGDQVAIHEAMEQQTISLAKAGVRATLNARTSILAAANPIGGRYDRAKSLQQNVALS 505
KM D+ AIHE MEQ ++++KAG+ A LNAR S+LAAANP+ GRYD K+ N+ +
Sbjct: 202 KMSDIDRTAIHEVMEQGRVTISKAGIHAKLNARCSVLAAANPVFGRYDEFKNPMDNIGMQ 261
Query: 506 PPIMSRFDLFFILIDESSEMVDYAIARKIVDLH 538
++SRFDL FI++D+ D I+ ++ +H
Sbjct: 262 DSLLSRFDLLFIVLDQMDPDNDRRISEHVLRIH 294
>SB_32060| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1162
Score = 200 bits (487), Expect = 5e-51
Identities = 107/223 (47%), Positives = 150/223 (67%), Gaps = 6/223 (2%)
Query: 302 LTTEDMRKQMTDKEWDKVYEMSRDRNLYNNLITSLFPSIHGNNEVKRGVLLMLFGGVAKT 361
+ TE+M KQ D+ W K + + N+++ S P ++G VK V L+L GGV +
Sbjct: 902 IVTEEM-KQEFDEFWSK--HKDKPLSGRNHILASFCPQVYGLYAVKLAVTLILMGGVQRV 958
Query: 362 TIEGTTLRGDINVCIVGDPSTAKSQLLKQVSEITPRAVYTSGKASSAAGLTAAVVRDEES 421
GT +RG+ ++ ++GDP T KSQ LK ++I PR+V T+G S++AGLT A VRD S
Sbjct: 959 DASGTRVRGESHMLLIGDPGTGKSQFLKYSAKIMPRSVLTTGIGSTSAGLTVAAVRD--S 1016
Query: 422 FDFVIEAGALMLADNGVCCIDEFDKMDPGDQVAIHEAMEQQTISLAKAGVRATLNARTSI 481
++ +EAGAL+LAD G+CCIDEF+ + D+ +IHEAMEQQTIS+AKAG+ LN RT+I
Sbjct: 1017 GEWQLEAGALVLADGGLCCIDEFNSIREHDRGSIHEAMEQQTISVAKAGMVCKLNTRTTI 1076
Query: 482 LAAANPIGGRYDRAKSLQQNVALSPPIMSRFDLFFILIDESSE 524
LAA NP G+ D +SL N AL+ P++SRFDL F+L D +E
Sbjct: 1077 LAATNP-KGQLDIDQSLSVNTALASPLLSRFDLVFVLQDVKNE 1118
Score = 44.4 bits (100), Expect = 4e-04
Identities = 56/237 (23%), Positives = 106/237 (44%), Gaps = 36/237 (15%)
Query: 25 FQDFLEEFK--EDNEIKYEKHAKELLKPELSTLEVSFDDVEKYNQNLATTIIEEYYRIYP 82
FQ FLEE+ + I ++ + ++TLE+ D++ A +++ + ++ P
Sbjct: 647 FQLFLEEYHVIDIRRILLQEDTAQHYSLIVNTLELFDSDIQS-----AQSLLTQPNKMLP 701
Query: 83 FLNRAILNYILSLA-ETGMKKDLQDK-ECYVSFVDVPTRHKVRELTTAK---IGTLIRIS 137
+ A+ +SL ET ++ K +V ++P +++ T K +G + +S
Sbjct: 702 LFDSALTQAAVSLMQETETPTNMSFKPNIHVRLSNLPICPELKRSTIPKSSDMGRFLAVS 761
Query: 138 GQIVRTHPV-----HPELVQGT-------------FYTIP--TICRNPVCANRRRFML-- 175
G ++R + E + FYTIP T C + +F
Sbjct: 762 GTVIRVSSIKMLEHEREFICSRCKYVFSAQADFEQFYTIPKPTSCPSGEGCTSNKFNCLS 821
Query: 176 --DADKSVFVDFQKIRIQETQAELPRGCIPRSLEVILRAEAVESVQAGDRYDFTGTL 230
++ + D+Q+I+IQE +L G IPRS+ V+L + V+S +AGD +G +
Sbjct: 822 EPGSNPTSCRDYQEIKIQEQVQKLAVGTIPRSMWVVLEDDLVDSCKAGDDVTISGVV 878
>SB_56664| Best HMM Match : bZIP_1 (HMM E-Value=0.00033)
Length = 652
Score = 190 bits (464), Expect = 3e-48
Identities = 93/141 (65%), Positives = 109/141 (77%), Gaps = 17/141 (12%)
Query: 120 HKVRELTTAKIGTLIRISGQIVRTHPVHPELVQGTF-----------------YTIPTIC 162
+++RELT+ KIG+L+RISGQ+VRTHPVHPELV TF YT PT+C
Sbjct: 507 YRIRELTSQKIGSLLRISGQVVRTHPVHPELVTATFTCLDCQTVIKDVEQQFKYTQPTVC 566
Query: 163 RNPVCANRRRFMLDADKSVFVDFQKIRIQETQAELPRGCIPRSLEVILRAEAVESVQAGD 222
RNP+C NR RF LD +KS +VDFQK+RIQETQAELPRGCIPRS+EVILRAEAVE QAGD
Sbjct: 567 RNPICQNRARFALDINKSRYVDFQKVRIQETQAELPRGCIPRSVEVILRAEAVEQAQAGD 626
Query: 223 RYDFTGTLIVVPDVGALSMPG 243
+ DFTGTLIVVPD+ L+ PG
Sbjct: 627 KCDFTGTLIVVPDIAQLATPG 647
>SB_53807| Best HMM Match : MCM (HMM E-Value=0)
Length = 789
Score = 179 bits (435), Expect = 9e-45
Identities = 120/347 (34%), Positives = 182/347 (52%), Gaps = 47/347 (13%)
Query: 311 MTDKEWDKVYEMSRDRNLYNNLITSLFPSIHGNNEVKRGVLLMLFGGVAKTTIEGTTLRG 370
+TD++ + +S+D + +I S+ PSI+G+ ++KR + L LFGGVAK +RG
Sbjct: 378 LTDEDIKAINALSKDERIGERIIASIGPSIYGHEDIKRALALSLFGGVAKDPGGKHKIRG 437
Query: 371 DINVCIVGDPSTAKSQLLKQVSEITPRAVYTSGKASSAAGLTAAVVRDEESFDFVIEAGA 430
DINV + GDP TAKSQ LK V + PRAV+T+G+ +SA GLTA V R + ++ +EAGA
Sbjct: 438 DINVLLCGDPGTAKSQFLKYVEKTAPRAVFTTGQGASAVGLTAYVQRHPVTKEWTLEAGA 497
Query: 431 LMLADNGVCCIDEFDKMDPGDQVAIHEAMEQQTISLAKAGVRATLNARTSILAAANPIGG 490
L+LAD G+C IDEFDK A+ + A N PIGG
Sbjct: 498 LVLADKGMCLIDEFDK--------------------ARCSILAAAN----------PIGG 527
Query: 491 RYDRAKSLQQNVALSPPIMSRFDLFFILIDESSEMVDYAIARKIVDLHC--------NKE 542
RYD + + +NV L+ PI+SRFD+ ++ D + D +AR +V+ H N++
Sbjct: 528 RYDPSLTFAENVDLTEPILSRFDILCVVRDTVDAIQDELLARFVVNSHVRHHPNTPENED 587
Query: 543 ESYDCVYSRDD------LLRYIAFARS-FKPVITEEAGKLLVEYYXXXXXXXXXXXXXXW 595
E + +D L +Y+ +AR P + + + +
Sbjct: 588 EDMETEEVNEDAIPQDLLKKYMIYARERVHPRLNNMDQDKVAKMFADLRKESMATGSI-- 645
Query: 596 RITVRQLESMVRLAEGVAKMHCSGHVTPAHVHEAYRLLNKSIIRVEQ 642
ITVR +ESM+R+AE AKMH +V V+ A R++ +S I ++
Sbjct: 646 PITVRHIESMIRMAESHAKMHLREYVMEDDVNMAIRVMLESFIDTQK 692
Score = 67.7 bits (158), Expect = 3e-11
Identities = 52/223 (23%), Positives = 103/223 (46%), Gaps = 24/223 (10%)
Query: 25 FQDFLEEFKEDN-EIKYEKHAKELLKPELSTLEVSFDDVEKYNQNLATTIIEEYYRIYPF 83
F+ FL F +D Y + +++ + +L + ++ + Q LA + E +
Sbjct: 121 FKQFLRTFVDDQGHSVYREKIRQMCEANKQSLVIDYNILANEQQVLAYFLPEAPTEMLQI 180
Query: 84 LNRAILNYILSLAETGMKKDLQDKECYVSFVDVPTRHKVRELTTAKIGTLIRISGQIVRT 143
+ A +L++ D E +V ++P ++R L + LIR G + +
Sbjct: 181 FDEAAKEVVLAMFPN---YDRITTEIHVRIAELPLMEELRSLRQLHVNQLIRTGGVVTSS 237
Query: 144 HPVHPEL------------VQGTFY------TIPTICRNPVCANRRRFMLDADKSVFVDF 185
+ P+L + G F+ P C P C +R F ++ +++++ ++
Sbjct: 238 TGIMPQLSVIKYDCPKCSFILGPFFQGSDQEVKPGSC--PECQSRGPFEINMEQTLYQNY 295
Query: 186 QKIRIQETQAELPRGCIPRSLEVILRAEAVESVQAGDRYDFTG 228
QKI+IQE+ +++ G +PR +VIL A+ V+S + GD + TG
Sbjct: 296 QKIKIQESPSKVAAGRLPRYKDVILMADLVDSCKPGDEIELTG 338
>SB_6324| Best HMM Match : MCM (HMM E-Value=0)
Length = 1592
Score = 146 bits (353), Expect = 8e-35
Identities = 85/213 (39%), Positives = 122/213 (57%), Gaps = 10/213 (4%)
Query: 427 EAGALMLADNGVCCIDEFDKMDPGDQVAIHEAMEQQTISLAKAGVRATLNARTSILAAAN 486
+ GAL+LAD GVCCIDEFDKM GD+ AIHE MEQQT+S+AKAG+ TLNAR SILAAAN
Sbjct: 868 KGGALVLADKGVCCIDEFDKMMDGDRTAIHEVMEQQTVSIAKAGIMTTLNARVSILAAAN 927
Query: 487 PIGGRYDRAKSLQQNVALSPPIMSRFDLFFILIDESSEMVDYAIARKIVDLH---CNKEE 543
P GRY+ KS +QN+ L ++SRFDL +++ D+ + D +A+ I +H +
Sbjct: 928 PAYGRYNPKKSAEQNIQLPAALLSRFDLLWLIQDKPDKENDLRLAQHITYVHQHSAHPPS 987
Query: 544 SYDCVYSRDDLLRYIAFARSFKPVITEEAGKLLVEYYXXXXXXXXXXXXXXWRITVRQLE 603
YD + + + RYIA + +P++ E +V Y + + R L
Sbjct: 988 HYDPL-DMNLMRRYIAACKEKQPIVPGELSDYIVSAYVEMRKDARNNHDTTF-TSARTLL 1045
Query: 604 SMVRLAEGVAKMHCSGHVTPAHVHEAYRLLNKS 636
+++RLA + + V+EA RL+ S
Sbjct: 1046 AVLRLATALRTLS-----EKEDVNEAMRLMEMS 1073
Score = 48.4 bits (110), Expect = 2e-05
Identities = 52/222 (23%), Positives = 88/222 (39%), Gaps = 25/222 (11%)
Query: 20 RCQKLFQDFLEEFKEDNEIKYEKHAKELLKPELSTLEVSFDDVEKYNQNLATTIIEEYYR 79
+ ++ +F + E E KY + ++ E L + DD+ + +Q+LA + E R
Sbjct: 558 KAKRFLAEFYVQGDEGKEFKYGEQLIKIAHREQQELLIELDDIAEIDQDLAENVKENTRR 617
Query: 80 IYPFLNRAILNYILSLAETGMKKDLQDKECYVSFVDVPTRHKVRELTTAKIGTLIRISGQ 139
AI + E +++Q K+ +D+ H+ L + G
Sbjct: 618 YKRLFEDAIYEMLPEYKE----REVQTKDA----LDIYIEHR---LLLEQRNRQNEPGGA 666
Query: 140 IVRTHPVHPELVQGTFYTIPTICRNPVCANRRRFMLDADKSVFVDFQKIRIQETQAELPR 199
I PEL++ A R + L S FV FQ+++IQE ++P
Sbjct: 667 IDPRTKYPPELLRRL-------------AGGRLY-LQTRGSKFVKFQELKIQEHSDQVPV 712
Query: 200 GCIPRSLEVILRAEAVESVQAGDRYDFTGTLIVVPDVGALSM 241
G IPRS+ +I + E GD TG + + G M
Sbjct: 713 GHIPRSMTIIAKGENTRLATPGDHVSVTGIFLPMMKTGFRQM 754
>SB_55518| Best HMM Match : MCM (HMM E-Value=8.6e-19)
Length = 171
Score = 139 bits (337), Expect = 7e-33
Identities = 73/129 (56%), Positives = 96/129 (74%), Gaps = 3/129 (2%)
Query: 396 PRAVYTSGKASSAAGLTAAVVRDEESFDFVIEAGALMLADNGVCCIDEFDKMDPGDQVAI 455
PR+V T+G S++AGLT A VRD S ++ +EAGAL+LAD G+CCIDEF+ + D+ +I
Sbjct: 2 PRSVLTTGIGSTSAGLTVAAVRD--SGEWQLEAGALVLADGGLCCIDEFNSIREHDRGSI 59
Query: 456 HEAMEQQTISLAKAGVRATLNARTSILAAANPIGGRYDRAKSLQQNVALSPPIMSRFDLF 515
HEAMEQQTIS+AKAG+ LN RT+ILAA NP G+ D +SL N AL+ P++SRFDL
Sbjct: 60 HEAMEQQTISVAKAGMVCKLNTRTTILAATNP-KGQLDIDQSLSVNTALASPLLSRFDLV 118
Query: 516 FILIDESSE 524
F+L D +E
Sbjct: 119 FVLQDVKNE 127
>SB_6119| Best HMM Match : MCM (HMM E-Value=3.6e-13)
Length = 100
Score = 122 bits (294), Expect = 1e-27
Identities = 54/96 (56%), Positives = 73/96 (76%)
Query: 426 IEAGALMLADNGVCCIDEFDKMDPGDQVAIHEAMEQQTISLAKAGVRATLNARTSILAAA 485
+EAGA++LAD GV CIDEFDKM D+ AIHE MEQ ++++KAG+ A LNAR S+LAAA
Sbjct: 5 LEAGAMVLADRGVVCIDEFDKMSDIDRTAIHEVMEQGRVTISKAGIHAKLNARCSVLAAA 64
Query: 486 NPIGGRYDRAKSLQQNVALSPPIMSRFDLFFILIDE 521
NP+ GRYD K+ N+ + ++SRFDL FI++D+
Sbjct: 65 NPVFGRYDEFKNPMDNIGMQDSLLSRFDLLFIVLDQ 100
>SB_12515| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 769
Score = 51.2 bits (117), Expect = 3e-06
Identities = 19/32 (59%), Positives = 26/32 (81%)
Query: 428 AGALMLADNGVCCIDEFDKMDPGDQVAIHEAM 459
+GAL+L+DNG+CCIDEFDKM+ + +HE M
Sbjct: 375 SGALVLSDNGICCIDEFDKMNDSTRAVLHEVM 406
Score = 46.4 bits (105), Expect = 9e-05
Identities = 17/43 (39%), Positives = 32/43 (74%)
Query: 318 KVYEMSRDRNLYNNLITSLFPSIHGNNEVKRGVLLMLFGGVAK 360
+++++++ ++Y L +L PSI+ N ++K+G+LL LFGG AK
Sbjct: 322 QLHQLAKQPDIYERLARNLAPSIYENEDIKKGILLQLFGGTAK 364
Score = 41.5 bits (93), Expect = 0.003
Identities = 28/82 (34%), Positives = 41/82 (50%), Gaps = 3/82 (3%)
Query: 557 YIAFARSF-KPVITEEAGKLLVEYYXXXXXXXXXXXXXXWRITVRQLESMVRLAEGVAKM 615
YI +AR++ P + EEA + L++ Y RQLES++RLAE A+M
Sbjct: 473 YIGYARTYINPRLGEEAAQSLIQVYVEMRKVGSSHGAVT--AYPRQLESLIRLAEAHARM 530
Query: 616 HCSGHVTPAHVHEAYRLLNKSI 637
S V V EA RL +++
Sbjct: 531 RFSDTVDIVDVEEAKRLHREAL 552
Score = 29.9 bits (64), Expect = 8.4
Identities = 25/112 (22%), Positives = 48/112 (42%), Gaps = 6/112 (5%)
Query: 40 YEKHAKELLKPELSTLEVSFDDVEKYNQNLATTIIEEYYRIYPFLNRAILN-YILSLAET 98
Y + +E+ E L + ++K++ +L ++ + P + AI + +T
Sbjct: 125 YMQRLEEIHVLETPFLNIDCCQLKKFDADLYRQLVCYPQEVVPTFDMAINEIFFEKYPDT 184
Query: 99 GMKKDLQDKECYVSFVDVPTRHKVRELTTAKIGTLIRISGQIVRTHPVHPEL 150
++ +Q V +V +R L I TLI I G + RT + PE+
Sbjct: 185 TLEHQIQ-----VRTYNVDKTKNMRALNPEDIDTLITICGMVTRTSSIIPEM 231
>SB_53376| Best HMM Match : DUF498 (HMM E-Value=5.7)
Length = 228
Score = 41.9 bits (94), Expect = 0.002
Identities = 51/221 (23%), Positives = 94/221 (42%), Gaps = 16/221 (7%)
Query: 427 EAGALMLADNGVCCIDEFDKMDPGDQVAIHEAMEQQTISLAKAGVRATLNARTSILAAAN 486
+ G + LA NGV +DE + + + +E + +++++A T + ++A+ N
Sbjct: 7 QPGEISLAHNGVLFLDELPEFKREVLEVMRQPLEDREVTISRAKFTITYPSSFMLVASMN 66
Query: 487 PIGGRYDRAKSLQQNVALSPPIMSRF--DLFFILIDESSEMVDYAIA--RKIVDLHCNKE 542
P G Y + VA SP M R+ + L+D ++ K+ D K
Sbjct: 67 PSPGGYFNDPNAP--VASSPMEMQRYLSKISGPLLDRIDIHIEVTPVPFEKLSD--TRKA 122
Query: 543 ESYDCVYSRDDLLRYIAFAR--SFKPV--ITEEAGKLLVEYYXXXXXXXXXXXXXXWR-- 596
ES + R L R I R +FK + + + KL+ EY R
Sbjct: 123 ESSAAIRERVTLAREIQSVRFQNFKNIHYNAQLSSKLIREYCVLDDESLQLLKTAMERLN 182
Query: 597 ITVRQLESMVRLAEGVAKMHCSGHVTPAHVHEA--YRLLNK 635
++ R + ++++A +A + S + H+ EA YR L++
Sbjct: 183 LSARAYDRILKVARTIADLEASRTIQSCHIAEAIQYRSLDR 223
>SB_11767| Best HMM Match : Kinesin (HMM E-Value=0)
Length = 1230
Score = 36.7 bits (81), Expect = 0.073
Identities = 22/65 (33%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
Query: 616 HCSGHVTPAHVHEAYRLLNKSIIRVEQPDIHLDEDEPQCEPSMDVDQDEPNGTAETPSNG 675
HC+ + A H+ YR L+ +I R +I+ DE E CE D ++ + TA+ +N
Sbjct: 205 HCTAKIYCALYHDIYRALHHNIYRALYHNIYPDEKE--CEKRRDNAKEARDFTAKALANF 262
Query: 676 DSAPK 680
D A K
Sbjct: 263 DEAIK 267
>SB_53111| Best HMM Match : Complex1_30kDa (HMM E-Value=2.6)
Length = 227
Score = 33.9 bits (74), Expect = 0.51
Identities = 15/30 (50%), Positives = 21/30 (70%)
Query: 308 RKQMTDKEWDKVYEMSRDRNLYNNLITSLF 337
+K +TDK+WDK+Y +S NL + IT LF
Sbjct: 125 KKILTDKQWDKLYPLSGSPNLKDFDITLLF 154
>SB_19075| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 6500
Score = 33.5 bits (73), Expect = 0.68
Identities = 21/75 (28%), Positives = 39/75 (52%)
Query: 364 EGTTLRGDINVCIVGDPSTAKSQLLKQVSEITPRAVYTSGKASSAAGLTAAVVRDEESFD 423
+GT+L GDI+ I D S+ QL++++ + + V A L+A + ++SF
Sbjct: 4198 QGTSLTGDISAVIKADNSSEPDQLVQKIVKEGSKEVSPVRDADIVFALSATGQQRDQSFR 4257
Query: 424 FVIEAGALMLADNGV 438
+ EA ++A G+
Sbjct: 4258 MLQEAVKGLVARYGI 4272
>SB_2190| Best HMM Match : SGS (HMM E-Value=2.5)
Length = 221
Score = 33.5 bits (73), Expect = 0.68
Identities = 12/40 (30%), Positives = 26/40 (65%)
Query: 311 MTDKEWDKVYEMSRDRNLYNNLITSLFPSIHGNNEVKRGV 350
+TD++ + +S+D + +I S+ PSI+G+ ++KR +
Sbjct: 57 LTDEDIKAINALSKDERIGERIIASIGPSIYGHEDIKRAL 96
>SB_53812| Best HMM Match : LANC_like (HMM E-Value=4.9e-17)
Length = 283
Score = 33.1 bits (72), Expect = 0.90
Identities = 28/115 (24%), Positives = 51/115 (44%), Gaps = 3/115 (2%)
Query: 26 QDFLEEFKE-DNEIKYEKHAKELLKPELSTL-EVSFDDVEKYNQNLATTIIEEYYRIYPF 83
++F +F + D + ++ +P LS L E + + +Y + L + E + +Y
Sbjct: 6 REFENKFSDYDGRTRLLSEKGKIEEPFLSNLTEQALKMLRRYEEGLKSERDESNHSVYTG 65
Query: 84 LNRAILNYILSLAETGMKKDLQDKECYVSFVDVPTRHKVRELTTAKIGTLIRISG 138
A L Y L LA T + D + +ECY+S + LT ++ L +G
Sbjct: 66 SGGAALLY-LHLASTLFRDDKEKRECYLSSALQILEQAAKNLTGRRVTFLCGDAG 119
>SB_12218| Best HMM Match : PHK_AB (HMM E-Value=2.2e-07)
Length = 732
Score = 31.9 bits (69), Expect = 2.1
Identities = 23/98 (23%), Positives = 47/98 (47%), Gaps = 8/98 (8%)
Query: 61 DVEKYNQNLATTIIEEYYRIYPFLNRAILNYILSLAETGMK----KDLQDKECYVSFVDV 116
+ +KY E + + PF + +L +ILS E G+ + L +K+ + +D+
Sbjct: 522 ETKKYMNRSREDAAEYFMNLSPFEMKTLLYHILSGKEFGITDGSVRTLSEKQLSIINIDL 581
Query: 117 PTRHKVRELTTAKIGTLIRISGQIVRTHPVHPELVQGT 154
P R +++L+ A + +SG+ + P+L+ T
Sbjct: 582 PKRVGIKKLSNA----IKNLSGRSMHRQHGQPDLLHLT 615
>SB_19024| Best HMM Match : Thiolase_C (HMM E-Value=5.4e-36)
Length = 330
Score = 31.5 bits (68), Expect = 2.7
Identities = 48/199 (24%), Positives = 68/199 (34%), Gaps = 8/199 (4%)
Query: 249 TTRTKLANEGQMEGIKG--LKALGVRELHYKTAFLACSVQAVSRR--FGTAELPTHD--- 301
T T +EG + G + + L KT V V F T EL T++
Sbjct: 3 TDLTSTFDEGNCIKLVGYDMTKTAAKRLFDKTGLSPKDVDVVELHDCFSTNELLTYEALG 62
Query: 302 LTTEDMRKQMTDKEWDKVYEMSRDRNLYNNLITSLFPSIHGNNEVKRGVLLMLFGGVAKT 361
L E +M D+ D Y N LI+ P + L L G K
Sbjct: 63 LCDEGKAGEMVDRG-DNTYGGKYVVNPSGGLISKGHPLGATGLAQCTELTLQLRGACGKR 121
Query: 362 TIEGTTLRGDINVCIVGDPSTAKSQLLKQVSEITPRAVYTSGKASSAAGLTAAVVRDEES 421
+ G L N+ + G A ++ S PR YT+ A+ G +A V DE
Sbjct: 122 QVPGAKLALQHNLGLGGAVIVALYRMGFPKSRFQPRQAYTAATATGKDGFKSAAVFDEIE 181
Query: 422 FDFVIEAGALMLADNGVCC 440
+ + GV C
Sbjct: 182 KQIKKDGAKFVKKVKGVYC 200
>SB_35452| Best HMM Match : UK (HMM E-Value=5.7)
Length = 223
Score = 31.1 bits (67), Expect = 3.6
Identities = 20/74 (27%), Positives = 37/74 (50%), Gaps = 6/74 (8%)
Query: 621 VTPAHVHEAYRLLNKSIIRVEQ-PDIHLDEDEPQCEPSMDVDQDEPNGTAETPSNGDSAP 679
VT H + + + S++ +E+ P+I ++ D+P C P + D D + S
Sbjct: 144 VTNIHTKSSIKGQSMSLVALEKHPEIWINVDQPPCAPFVITDAD-----IKAQEERVSRQ 198
Query: 680 KKKLALSFEEYKSL 693
++KLA + E+K L
Sbjct: 199 RQKLAEAIAEHKQL 212
>SB_33291| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1227
Score = 30.7 bits (66), Expect = 4.8
Identities = 16/45 (35%), Positives = 24/45 (53%)
Query: 520 DESSEMVDYAIARKIVDLHCNKEESYDCVYSRDDLLRYIAFARSF 564
D+S ++ KI H + + + +YSR DLLR I A+SF
Sbjct: 1123 DKSVDLTICVCNSKIGQRHSKRNKHWINIYSRKDLLRVITRAKSF 1167
>SB_1573| Best HMM Match : Thiolase_C (HMM E-Value=1.6e-40)
Length = 331
Score = 30.7 bits (66), Expect = 4.8
Identities = 45/178 (25%), Positives = 63/178 (35%), Gaps = 8/178 (4%)
Query: 249 TTRTKLANEGQMEGIKG--LKALGVRELHYKTAFLACSVQAVSRR--FGTAELPTHD--- 301
T T +EG + G + + L KT V V F T EL T++
Sbjct: 148 TDLTSTFDEGNCIKLVGYDMTKTAAKRLFDKTGLSPKDVDVVELHDCFSTNELLTYEALG 207
Query: 302 LTTEDMRKQMTDKEWDKVYEMSRDRNLYNNLITSLFPSIHGNNEVKRGVLLMLFGGVAKT 361
L E +M D+ D Y N LI+ P + L L G K
Sbjct: 208 LCDEGKAGEMVDRG-DNTYGGKYVVNPSGGLISKGHPLGATGLAQCTELTLQLRGACGKR 266
Query: 362 TIEGTTLRGDINVCIVGDPSTAKSQLLKQVSEITPRAVYTSGKASSAAGLTAAVVRDE 419
+ G L N+ + G A ++ S PR YT+ A+ G +A V DE
Sbjct: 267 QVPGAKLALQHNLGLGGAVIVALYRMGFPKSRFQPRQAYTAATATGKDGFKSAAVFDE 324
>SB_38457| Best HMM Match : zf-C2H2 (HMM E-Value=0)
Length = 4303
Score = 30.3 bits (65), Expect = 6.3
Identities = 16/57 (28%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
Query: 607 RLAEGVAKMHCSGHVTPAHVHEAYRLLN--KSIIRVEQPDIHLDEDEPQCEPSMDVD 661
+ E KM C+ HV + + + + E ++ L DEP EP++DVD
Sbjct: 3965 KTCELCGKMFCTPEYVAKHVSMVHGKMRPYSEVKQTEDFELALSNDEPATEPAVDVD 4021
>SB_19130| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 658
Score = 29.9 bits (64), Expect = 8.4
Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Query: 632 LLNKSIIRVEQPDIHLDEDEPQCEPSMDVDQDEPNGTAETPSNGDSAPKKKLA 684
L++K R +Q + D D+ C+ D D D P+ TP + KKKLA
Sbjct: 422 LISKKAKR-KQTNKDYDSDDDSCDSGDDSDADTPSSNV-TPRGKNKDAKKKLA 472
>SB_50178| Best HMM Match : F5_F8_type_C (HMM E-Value=0.6)
Length = 497
Score = 29.9 bits (64), Expect = 8.4
Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 7/45 (15%)
Query: 641 EQPDIHLDED----EPQCEPSMDVDQDEPNGTAETPSNGDSAPKK 681
E+PD DED EP E S D D+ + T E P + DS P++
Sbjct: 364 EEPD---DEDSTPEEPDDEDSTPEDPDDEDSTPEEPDDEDSTPEE 405
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.380
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,009,338
Number of Sequences: 59808
Number of extensions: 956639
Number of successful extensions: 2796
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 2736
Number of HSP's gapped (non-prelim): 59
length of query: 799
length of database: 16,821,457
effective HSP length: 88
effective length of query: 711
effective length of database: 11,558,353
effective search space: 8217988983
effective search space used: 8217988983
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 64 (29.9 bits)
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