GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000828-TA|BGIBMGA000828-PA|IPR008994|Nucleic
acid-binding, OB-fold, IPR001208|MCM, IPR008049|MCM protein 6
         (799 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    26   1.4  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   7.4  
AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc fi...    23   7.4  

>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 25.8 bits (54), Expect = 1.4
 Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 1/48 (2%)

Query: 14  KDEVGIRCQKLFQDFLEEFKEDNEIKYEKHAKELLKP-ELSTLEVSFD 60
           K EV   C K F D L +  E ++I  + HAK +    E +T + S D
Sbjct: 526 KIEVTEDCNKSFNDLLTQVAELDQIYADTHAKLVQAAFEQNTTDQSMD 573


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.4 bits (48), Expect = 7.4
 Identities = 11/30 (36%), Positives = 16/30 (53%)

Query: 286  QAVSRRFGTAELPTHDLTTEDMRKQMTDKE 315
            Q V+R +G        +TTE+MRK +   E
Sbjct: 1892 QLVNRNYGVNARGKDGMTTEEMRKLIERNE 1921


>AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc
           finger domain-Z2 isoform protein.
          Length = 71

 Score = 23.4 bits (48), Expect = 7.4
 Identities = 7/20 (35%), Positives = 12/20 (60%)

Query: 529 AIARKIVDLHCNKEESYDCV 548
           ++ R + D H  ++E Y CV
Sbjct: 20  SLKRHVADKHAERQEEYRCV 39


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.318    0.134    0.380 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 202,129
Number of Sequences: 429
Number of extensions: 8003
Number of successful extensions: 12
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 9
Number of HSP's gapped (non-prelim): 3
length of query: 799
length of database: 140,377
effective HSP length: 63
effective length of query: 736
effective length of database: 113,350
effective search space: 83425600
effective search space used: 83425600
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 47 (23.0 bits)