GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000827-TA|BGIBMGA000827-PA|IPR007835|MOFRL
         (421 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    22   9.4  
AY769607-1|AAV40983.1|  196|Tribolium castaneum heat shock cogna...    22   9.4  
AY769606-1|AAV40982.1|  196|Tribolium castaneum heat shock prote...    22   9.4  

>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 21.8 bits (44), Expect = 9.4
 Identities = 11/33 (33%), Positives = 15/33 (45%)

Query: 115 KVISDLKGGQLAVKAQPAQVVSLILSDIVGDPL 147
           KV+  L  G LAV        SL+   +V  P+
Sbjct: 490 KVLEPLYSGNLAVSVATPNDTSLVRGRLVAKPV 522


>AY769607-1|AAV40983.1|  196|Tribolium castaneum heat shock cognate
           70 protein.
          Length = 196

 Score = 21.8 bits (44), Expect = 9.4
 Identities = 20/79 (25%), Positives = 29/79 (36%)

Query: 313 NQQLALEFSKYLHKVKDQLNDFDIFILSAGTDGIDGPTDAAGAIGYLNLISESTADGLDV 372
           N+  A   +  L K  ++  +  IF L  GT  +   T   G         ++   G D 
Sbjct: 2   NEPTAAAIAYGLDKKAEKERNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDF 61

Query: 373 DKYLANNDTYNFFKLFKND 391
           D  L    T +F K  K D
Sbjct: 62  DNRLVEYCTQDFKKKHKAD 80


>AY769606-1|AAV40982.1|  196|Tribolium castaneum heat shock protein
           70 protein.
          Length = 196

 Score = 21.8 bits (44), Expect = 9.4
 Identities = 20/79 (25%), Positives = 29/79 (36%)

Query: 313 NQQLALEFSKYLHKVKDQLNDFDIFILSAGTDGIDGPTDAAGAIGYLNLISESTADGLDV 372
           N+  A   +  L K  ++  +  IF L  GT  +   T   G         ++   G D 
Sbjct: 2   NEPTAAAIAYGLDKKAERERNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDF 61

Query: 373 DKYLANNDTYNFFKLFKND 391
           D  L    T +F K  K D
Sbjct: 62  DNRLVEYCTQDFKKKHKAD 80


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.314    0.135    0.369 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 92,616
Number of Sequences: 317
Number of extensions: 3891
Number of successful extensions: 11
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 8
Number of HSP's gapped (non-prelim): 3
length of query: 421
length of database: 114,650
effective HSP length: 59
effective length of query: 362
effective length of database: 95,947
effective search space: 34732814
effective search space used: 34732814
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 44 (21.8 bits)