GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000827-TA|BGIBMGA000827-PA|IPR007835|MOFRL
         (421 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_20837| Best HMM Match : No HMM Matches (HMM E-Value=.)             304   7e-83
SB_21701| Best HMM Match : No HMM Matches (HMM E-Value=.)              34   0.19 
SB_42627| Best HMM Match : DUF164 (HMM E-Value=0.33)                   31   1.3  
SB_8591| Best HMM Match : DUF601 (HMM E-Value=0.23)                    31   1.3  
SB_52593| Best HMM Match : Baculo_PEP_C (HMM E-Value=6.1)              31   2.3  
SB_22331| Best HMM Match : fn3 (HMM E-Value=7.1e-14)                   30   3.1  
SB_53686| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   4.1  
SB_5271| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   4.1  
SB_49481| Best HMM Match : Trigger_C (HMM E-Value=1.6)                 29   5.4  
SB_35218| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   9.4  

>SB_20837| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1304

 Score =  304 bits (747), Expect = 7e-83
 Identities = 171/421 (40%), Positives = 248/421 (58%), Gaps = 29/421 (6%)

Query: 1   MSREVENILQSKIKYGIISIPMGSLDVFNKSRNVEYF--------------EGAKDNLPD 46
           M+R VE++L   I  G+ SIP G  D   +S N ++               EGAK NLPD
Sbjct: 77  MARAVEDVLGHNIIRGVASIPCGLQDAIKESGNEDFIKSTLLRPGSPIHIIEGAKHNLPD 136

Query: 47  NSAQNTALKIKNLITQLNKDDLLLVLISGGGSALLPLPKSPITLEEKIGLVKKLANSGAD 106
           + AQ  A +I+N+ TQ+ ++D+LLVLISGGGSALLP P   ITL+EK+  +K +A+SG  
Sbjct: 137 DRAQYAATQIQNIATQVTENDILLVLISGGGSALLPSPIDAITLQEKLKTIKAVASSGGT 196

Query: 107 IKELNTVRKVISDLKGGQLAVKAQPAQVVSLILSDIVGDPLDLIASGPTVQNTDGANKAV 166
           I +LNTVRK +S LKGG+LA  A PA+VV+LILSD++GDPLD+IASGPTV +       +
Sbjct: 197 IVDLNTVRKNLSKLKGGKLAQLAYPAKVVTLILSDVIGDPLDIIASGPTVPDQSNPRDCL 256

Query: 167 DVLKKYNLIDALPKSVQTLLENNGDNLVFPTN------NTSNYIIGSNKISTKAAVVQCI 220
           ++ +K    + +PKSV   L+   D     +       N  N ++G+N+I+ KAA  +  
Sbjct: 257 EIFRKLKAEEKVPKSVMQYLQGMADQPKPESQNNREFANVHNVLVGTNRIAVKAAAAEAA 316

Query: 221 ELNYLPLVLSNKVTGNVQDVANKYSKLVTVICKYLRQNLEIDELKSNIKKLEISGTDLKV 280
            L Y P++ S  + G   +V   ++ L ++        L  + +  N    +   T   V
Sbjct: 317 NLGYTPIIASTTLEGEAGEVGKSFANLASIA-------LTGNPIPGNSPVADKDLTSENV 369

Query: 281 LNEIKISNKKPLCLILGGEITVAVKGTGKGGRNQQLALEFSKYLHKVKDQLNDFD-IFIL 339
           +N+IK   +KPLC+I  GE TV +KGTGKGGRNQ++ L  +  + + +   +  D +  L
Sbjct: 370 INQIK-GAQKPLCVIGAGETTVTIKGTGKGGRNQEMVLSSALLMQQAQQIFSKEDGVVFL 428

Query: 340 SAGTDGIDGPTDAAGAIGYLNLISESTADGLDVDKYLANNDTYNFFKLFKNDHLHVFTGH 399
           SAGTDG DGPT AAGA+   + ++E+T  GL   +++ NND+Y F+  F N   HV TG 
Sbjct: 429 SAGTDGQDGPTPAAGALATPSQVNEATKHGLSAQEFIDNNDSYTFYSNFLNGRDHVVTGL 488

Query: 400 T 400
           T
Sbjct: 489 T 489


>SB_21701| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1906

 Score = 34.3 bits (75), Expect = 0.19
 Identities = 31/123 (25%), Positives = 53/123 (43%), Gaps = 3/123 (2%)

Query: 89   TLEEKIGLVKKLANSGADIKELNTVRKVISDLKGGQLAVKAQPAQVVSLILSDIVGDPLD 148
            T EE   + K+ A+  A +KEL  +R+ +S+LKG  +  +A   + + L   +      D
Sbjct: 1608 TAEEVQRIKKENASLKAQVKELGEIRRSVSELKGELVEAEALKEKFIQLQRVERALRN-D 1666

Query: 149  LIASGPTVQNTDGANKAVDVLKKYNLIDALPKSVQTLLENNGDNLVFPTNNTSNYIIGSN 208
            L      +Q  DG  +  D+ +K         +       N D      N+ +N II +N
Sbjct: 1667 LQIQKMEIQRKDG--RIDDLERKLTKTQQQHNNNNNEAGGNNDKNCSSNNSDNNSIINNN 1724

Query: 209  KIS 211
             I+
Sbjct: 1725 SIN 1727


>SB_42627| Best HMM Match : DUF164 (HMM E-Value=0.33)
          Length = 412

 Score = 31.5 bits (68), Expect = 1.3
 Identities = 23/74 (31%), Positives = 39/74 (52%), Gaps = 2/74 (2%)

Query: 37  FEGAKDNLPDNSAQNTALKIKNLITQLNKDDLLLVLISGGGSALLPLPKSPITLEEKIGL 96
           F  ++ +LP   A   AL++KNL+    +  +LL + SG   ++  L K   TL+     
Sbjct: 10  FGKSQRSLPWKGASKLALRVKNLLAPNREFPILLKMASGATESV--LQKICDTLKRVEKR 67

Query: 97  VKKLANSGADIKEL 110
           V+ + NS A ++EL
Sbjct: 68  VRVIENSVACLEEL 81


>SB_8591| Best HMM Match : DUF601 (HMM E-Value=0.23)
          Length = 3368

 Score = 31.5 bits (68), Expect = 1.3
 Identities = 47/195 (24%), Positives = 75/195 (38%), Gaps = 21/195 (10%)

Query: 106  DIKELNTVRKVISDLKGGQLAVKAQPAQVVSLILSDIVGDPLDLIA-------SGPTVQN 158
            D  E  T +++I+ +   Q  +     Q  SL   ++ GD LD          S   VQ 
Sbjct: 2437 DFTEEQT-QEIINKVYKAQSLITKTADQATSLDHQEVKGDALDTFKFVIPQKQSEADVQG 2495

Query: 159  TDGANKAVDVLKKYNLIDALPKSVQTLLENNGDNLVFPTNNTSNYIIGSNKISTKAAVVQ 218
            T    +  D  K +N     P        N  D   + +   +N    + K +T  A+ +
Sbjct: 2496 TCHGQETND--KPFNSFTFAPPKDNDSTSNQ-DKTSYGSQQVNNNTTSTFKFATPTALCE 2552

Query: 219  CIELNYLPLVLSNKVTGNVQDVANKYSKLVTVICKYLRQNL-----EIDELKSNIKKLEI 273
              E + +          +VQ+V N+   L +   KYL+  L     EI E   ++  L  
Sbjct: 2553 PKEDDSID---DQTAPSSVQEVPNQTLTLFSY--KYLKHQLTATVNEIHETSDDMANLLY 2607

Query: 274  SGTDLKVLNEIKISN 288
             G D+K   E+K SN
Sbjct: 2608 DGDDVKEDQEVKSSN 2622


>SB_52593| Best HMM Match : Baculo_PEP_C (HMM E-Value=6.1)
          Length = 552

 Score = 30.7 bits (66), Expect = 2.3
 Identities = 29/105 (27%), Positives = 52/105 (49%), Gaps = 5/105 (4%)

Query: 188 NNGDNLVFPTNNTSNYIIGSNKISTKAAVVQCIELNYLPLVLSNKVTGNVQDVANKYSKL 247
           N G + V   N  ++Y+   N  ++   V+     +Y+ ++  N VT  V+ V N ++  
Sbjct: 106 NPGTSYVKVLNPVTSYVKVLNPFTSNVKVLNP-GTSYVKVL--NPVTSYVK-VLNSFTSY 161

Query: 248 VTVICKYLRQNLEIDELKSNIKKLEISGTDLKVLNEIKISNKKPL 292
           V V+  Y      ++ + SN+K L    +++KVLN +  SN K L
Sbjct: 162 VKVLNPYTSYVKLLNPVTSNVKVLNPVTSNVKVLNPV-TSNVKLL 205



 Score = 28.7 bits (61), Expect = 9.4
 Identities = 27/93 (29%), Positives = 46/93 (49%), Gaps = 6/93 (6%)

Query: 200 TSNYIIGSNKISTKAAVVQCIELNYLPLVLSNKVTGNVQDVANKYSKLVTVICKYLRQNL 259
           TSN  + SN +++   V+  +  N   + + N VT N + V N  +  V V+  +     
Sbjct: 269 TSNVKV-SNPVTSYVKVLNPVTSN---VTVFNPVTSN-EKVLNPVTSYVKVLNPFTSNIK 323

Query: 260 EIDELKSNIKKLEISGTDLKVLNEIKISNKKPL 292
            ++ + SN+K L    + +KVLN +  SN K L
Sbjct: 324 VLNPVTSNVKVLNPVTSYVKVLNPV-TSNVKVL 355


>SB_22331| Best HMM Match : fn3 (HMM E-Value=7.1e-14)
          Length = 908

 Score = 30.3 bits (65), Expect = 3.1
 Identities = 21/87 (24%), Positives = 37/87 (42%), Gaps = 2/87 (2%)

Query: 295 ILGGEITVAVKGTGKGGRNQQLALEFSKYLHKVKDQLNDFDIFILSAGTDGIDGPTDAAG 354
           +LG ++ V     G GG   +   EF+K L     + ND    +  +  D  D   +   
Sbjct: 788 VLGAQVNVRFSIAGAGGPAMEAQAEFTKLLEDAIIE-NDIAQSVQRSVADAEDLVINTQS 846

Query: 355 AIGYLNLISESTADGLDVDKYLANNDT 381
            +GY N + ++T D + +     N +T
Sbjct: 847 VVGYNNKLQKAT-DSMMLGANAINTET 872


>SB_53686| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 354

 Score = 29.9 bits (64), Expect = 4.1
 Identities = 21/87 (24%), Positives = 37/87 (42%), Gaps = 2/87 (2%)

Query: 295 ILGGEITVAVKGTGKGGRNQQLALEFSKYLHKVKDQLNDFDIFILSAGTDGIDGPTDAAG 354
           +LG ++ V     G GG   +   EF+K L     + ND    +  +  D  D   +   
Sbjct: 234 VLGAQVNVRSSIAGAGGPAMEAQAEFTKLLEDAIIE-NDIAQSVQRSVADAEDLVINTQS 292

Query: 355 AIGYLNLISESTADGLDVDKYLANNDT 381
            +GY N + ++T D + +     N +T
Sbjct: 293 VVGYNNKLQKAT-DSMMLGANAINTET 318


>SB_5271| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 216

 Score = 29.9 bits (64), Expect = 4.1
 Identities = 20/71 (28%), Positives = 32/71 (45%), Gaps = 4/71 (5%)

Query: 316 LALEFSKYLHKVK-DQLNDFDIFILSAGTDGID---GPTDAAGAIGYLNLISESTADGLD 371
           L   F  Y  K + ++   + + I   G D ++   G  D   AI   N++     DG D
Sbjct: 15  LIYHFDHYTPKSEVEKTYSYPLEITLRGDDKLEVIFGARDNVKAINGENVVGRKLPDGTD 74

Query: 372 VDKYLANNDTY 382
           V ++LAN + Y
Sbjct: 75  VMEFLANKENY 85


>SB_49481| Best HMM Match : Trigger_C (HMM E-Value=1.6)
          Length = 342

 Score = 29.5 bits (63), Expect = 5.4
 Identities = 18/50 (36%), Positives = 29/50 (58%), Gaps = 2/50 (4%)

Query: 91  EEKIGLVKKLANSGADIKELNTVRKVISDLKGGQLAVKAQPAQVVSLILS 140
           E+K   +KKLAN   +IK  + +RK++ + +G Q  V+   A V  +I S
Sbjct: 198 EQKYKSLKKLANG--EIKMNDLLRKIMDEKEGLQKQVERLKANVAQIIAS 245


>SB_35218| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 303

 Score = 28.7 bits (61), Expect = 9.4
 Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 1/38 (2%)

Query: 217 VQCIELNYLPLVLSNKVTGNVQD-VANKYSKLVTVICK 253
           V C EL  + ++  NKV  NV++ VA  YS+  T+ CK
Sbjct: 96  VPCPELISVSILFKNKVFRNVEEVVALLYSQKDTITCK 133


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.314    0.135    0.369 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,070,999
Number of Sequences: 59808
Number of extensions: 572386
Number of successful extensions: 1320
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1309
Number of HSP's gapped (non-prelim): 14
length of query: 421
length of database: 16,821,457
effective HSP length: 84
effective length of query: 337
effective length of database: 11,797,585
effective search space: 3975786145
effective search space used: 3975786145
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 61 (28.7 bits)