GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000826-TA|BGIBMGA000826-PA|IPR001156|Peptidase S60,
transferrin lactoferrin
         (855 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharo...    29   2.1  
SPBP8B7.18c |||phosphomethylpyrimidine kinase|Schizosaccharomyce...    28   4.8  
SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|ch...    27   8.3  

>SPAC23D3.13c |||guanyl-nucleotide exchange
           factor|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1616

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 17/49 (34%), Positives = 25/49 (51%)

Query: 739 ANHTELDAFSNLMVYALQFYGAVTSDEFSFSMFYSQPPYSDLIFSDVAV 787
           +N  +  +FS LM Y L  Y    S+    +  YSQP Y + + S +AV
Sbjct: 672 SNFQDSKSFSTLMDYELVSYKNELSELMYVTSSYSQPAYMEFLESLLAV 720


>SPBP8B7.18c |||phosphomethylpyrimidine kinase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 551

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 3/41 (7%)

Query: 224 CYGGAGIRCTLADPFA-GYEG--ALKCLVANNSGDIAFVRD 261
           C GGAGI+  L    + G  G  A+ CLVA N+G +  V +
Sbjct: 46  CSGGAGIQADLKTMTSLGVYGMSAITCLVAENAGGVDSVEE 86


>SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1208

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 22/80 (27%), Positives = 43/80 (53%), Gaps = 6/80 (7%)

Query: 58   MKSSLQDKGLFGNDYIELQCKKAFDIEECMKWLEQEEATLLGLDAGEVYVAGRY---HSL 114
            ++  L+++ L  +D I    K+   ++E +KWLE+E + L  +D  E Y + ++   ++L
Sbjct: 937  LQDELKNRNLLMDD-ISSYNKQTTKLQEKIKWLERERSIL--IDELESYRSNQFNYQNNL 993

Query: 115  VPILQELDGRGEPYQYSVAV 134
            V    EL+ R +  Q  + V
Sbjct: 994  VQDKNELEERLKEIQKELEV 1013


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.320    0.135    0.418 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,918,644
Number of Sequences: 5004
Number of extensions: 167797
Number of successful extensions: 338
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 336
Number of HSP's gapped (non-prelim): 4
length of query: 855
length of database: 2,362,478
effective HSP length: 79
effective length of query: 776
effective length of database: 1,967,162
effective search space: 1526517712
effective search space used: 1526517712
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 58 (27.5 bits)