GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000826-TA|BGIBMGA000826-PA|IPR001156|Peptidase S60,
transferrin lactoferrin
         (855 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_12466| Best HMM Match : Transferrin (HMM E-Value=4.4e-21)          116   1e-25
SB_31903| Best HMM Match : Amino_oxidase (HMM E-Value=3.36312e-44)     31   5.2  
SB_55856| Best HMM Match : TPR_2 (HMM E-Value=4.1e-14)                 30   9.0  
SB_11257| Best HMM Match : GCC2_GCC3 (HMM E-Value=2.7e-11)             30   9.0  

>SB_12466| Best HMM Match : Transferrin (HMM E-Value=4.4e-21)
          Length = 291

 Score =  116 bits (278), Expect = 1e-25
 Identities = 76/252 (30%), Positives = 134/252 (53%), Gaps = 20/252 (7%)

Query: 43  WCTISALEQKKCEKLMKSSLQDKGLFGNDYIELQCKKAFDIEECMKWLEQEEATLLGLDA 102
           WC IS  E +KC+ L  + +  + +  N+ + L C +   + +CM  ++++EA L+ L  
Sbjct: 29  WCCISDAEVEKCQAL--AHVASRVVTSNETVNLTCVRGDGVTDCMSRIQRDEADLVTLGE 86

Query: 103 GEVYVAGRYHSLVPILQELDGRGEPY-QYSVAVVRKGGLPNIQPGYGLQAMRGAKACFPS 161
            ++Y+AG  + L P++ E  G  + +  Y+VA+VR     NI        ++GA  C P 
Sbjct: 87  EDIYIAGAKYGLRPVVAEDYGSKDKHIHYAVALVRSTTTVNI------TTLKGAITCHPR 140

Query: 162 VGSLAGWVMPIHVLMQEGGLKVTDCNNHVKSATEYFGESCAPNSLKDLYNPIGDNSDKLC 221
              + GW +P+  L+ +  ++  DC+ +  SA E+FG+SC P  + D  N +  N+ KL 
Sbjct: 141 AEDMIGWKIPVGFLIWKKLMQRKDCDVY-NSAGEFFGKSCVP-GVFDAANNL--NNTKLP 196

Query: 222 KLCYGGAGIRC--TLADPFAGYEGALKCLVANNSGDIAFVRDTTI-QHALLSHKILGGIT 278
            LC   +   C    ++ + GY G+  CLV    G++AFVR TT+ ++  + + +  G  
Sbjct: 197 SLCGACSNPTCPGDESERYYGYNGSYVCLV-EGRGEVAFVRHTTVFEYTGVINDLNPGF- 254

Query: 279 EDQFELICRDGS 290
              F+L+C DG+
Sbjct: 255 --DFKLLCPDGT 264



 Score =  105 bits (253), Expect = 1e-22
 Identities = 68/218 (31%), Positives = 99/218 (45%), Gaps = 9/218 (4%)

Query: 475 CVTSDPEMDKCVKMRRALKAASLSPE---LSCWRAHSSRHCARAIAAGSCDFALFDAGDM 531
           C  SD E++KC  +         S E   L+C R      C   I     D       D+
Sbjct: 30  CCISDAEVEKCQALAHVASRVVTSNETVNLTCVRGDGVTDCMSRIQRDEADLVTLGEEDI 89

Query: 532 LHAAQHDRLVPFMQEVYSSGDSW-YYAVAVAKEQDPDTDLTYLRAKNTCHTGIGMAAGWL 590
             A     L P + E Y S D   +YAVA+ +      ++T L+   TCH       GW 
Sbjct: 90  YIAGAKYGLRPVVAEDYGSKDKHIHYAVALVRSTTT-VNITTLKGAITCHPRAEDMIGWK 148

Query: 591 YPLAYLLSNGWIRPYGCNGAHAAAEYWTKSCAPGALSSEYVDSGSLPYDNLCHLCHGASF 650
            P+ +L+    ++   C+  ++A E++ KSC PG   +    + +L    L  LC   S 
Sbjct: 149 IPVGFLIWKKLMQRKDCDVYNSAGEFFGKSCVPGVFDA----ANNLNNTKLPSLCGACSN 204

Query: 651 RRCRRDASEQYFGHVGAVRCMVEGGGDVAFVRHTAPAE 688
             C  D SE+Y+G+ G+  C+VEG G+VAFVRHT   E
Sbjct: 205 PTCPGDESERYYGYNGSYVCLVEGRGEVAFVRHTTVFE 242


>SB_31903| Best HMM Match : Amino_oxidase (HMM E-Value=3.36312e-44)
          Length = 1021

 Score = 30.7 bits (66), Expect = 5.2
 Identities = 16/65 (24%), Positives = 29/65 (44%)

Query: 727 LGKVPGSVLMGRANHTELDAFSNLMVYALQFYGAVTSDEFSFSMFYSQPPYSDLIFSDVA 786
           +  + GS  +   N ++ D  S +M    Q YG +      F   +S+ PY+   +SD  
Sbjct: 887 MATITGSEALRIENQSDEDTRSEVMATLRQLYGVIPEPTEMFYARWSKDPYTRGAYSDPT 946

Query: 787 VRLKP 791
           +  +P
Sbjct: 947 LDARP 951


>SB_55856| Best HMM Match : TPR_2 (HMM E-Value=4.1e-14)
          Length = 742

 Score = 29.9 bits (64), Expect = 9.0
 Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 2/36 (5%)

Query: 78  KKAFDIEECMKWLEQEEATL--LGLDAGEVYVAGRY 111
           ++A  +EEC K+LEQ E  L    +DAG  Y  G Y
Sbjct: 454 RRAGKLEECPKYLEQAENALPRAAMDAGFNYCKGLY 489


>SB_11257| Best HMM Match : GCC2_GCC3 (HMM E-Value=2.7e-11)
          Length = 3810

 Score = 29.9 bits (64), Expect = 9.0
 Identities = 10/21 (47%), Positives = 13/21 (61%)

Query: 587  AGWLYPLAYLLSNGWIRPYGC 607
            +G+L P  Y   NG + PYGC
Sbjct: 3156 SGYLCPTGYYCGNGTVHPYGC 3176


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.320    0.135    0.418 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,413,463
Number of Sequences: 59808
Number of extensions: 1292228
Number of successful extensions: 2456
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 2446
Number of HSP's gapped (non-prelim): 6
length of query: 855
length of database: 16,821,457
effective HSP length: 88
effective length of query: 767
effective length of database: 11,558,353
effective search space: 8865256751
effective search space used: 8865256751
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 64 (29.9 bits)