GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000826-TA|BGIBMGA000826-PA|IPR001156|Peptidase S60,
transferrin lactoferrin
         (855 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41264-1|AAA82421.1|  929|Caenorhabditis elegans Hypothetical pr...    33   0.64 
AC024775-1|AAK68455.1|  456|Caenorhabditis elegans Hypothetical ...    33   0.85 
U55369-1|AAK52175.1| 1247|Caenorhabditis elegans Cystic fibrosis...    30   6.0  
AL110487-17|CAH10818.1|  304|Caenorhabditis elegans Hypothetical...    30   6.0  
AL110487-16|CAH10817.1|  307|Caenorhabditis elegans Hypothetical...    30   6.0  
AL110487-15|CAB54432.1|  395|Caenorhabditis elegans Hypothetical...    30   6.0  

>U41264-1|AAA82421.1|  929|Caenorhabditis elegans Hypothetical
           protein F10E7.8 protein.
          Length = 929

 Score = 33.5 bits (73), Expect = 0.64
 Identities = 15/43 (34%), Positives = 24/43 (55%)

Query: 82  DIEECMKWLEQEEATLLGLDAGEVYVAGRYHSLVPILQELDGR 124
           D+ +  KW  ++  T++  +   V +AG YH +V IL E  GR
Sbjct: 218 DLSDSEKWRTRQLPTMVDNEMLRVILAGLYHMIVQILDERSGR 260


>AC024775-1|AAK68455.1|  456|Caenorhabditis elegans Hypothetical
           protein Y41D4A.5 protein.
          Length = 456

 Score = 33.1 bits (72), Expect = 0.85
 Identities = 18/58 (31%), Positives = 31/58 (53%), Gaps = 1/58 (1%)

Query: 40  LITWCTISALEQKKCEKLMKSSLQDKGLFGNDYIELQCKKAFDIEE-CMKWLEQEEAT 96
           ++  C +  L + KCE+     + +  LFG+  I L+ +K FD +E  M+ L+ E  T
Sbjct: 183 VVILCKLVELNKIKCERYWPEQVGESELFGDYEITLEEEKLFDDDEYLMRCLKMENQT 240


>U55369-1|AAK52175.1| 1247|Caenorhabditis elegans Cystic fibrosis
           transmembrane conductanceregulator homolog protein 1
           protein.
          Length = 1247

 Score = 30.3 bits (65), Expect = 6.0
 Identities = 20/52 (38%), Positives = 32/52 (61%), Gaps = 4/52 (7%)

Query: 57  LMKSSLQDKGLFGNDYIELQCKK---AFDIEECMKWLEQEEATLLGLDAGEV 105
           +   SL++  LFGNDY++ +  K   A D+++ +  L + EAT+LG D G V
Sbjct: 479 IFSQSLKENILFGNDYVKSKYDKVIMACDLKKDIFSLPRCEATVLG-DKGYV 529


>AL110487-17|CAH10818.1|  304|Caenorhabditis elegans Hypothetical
           protein Y39E4B.3c protein.
          Length = 304

 Score = 30.3 bits (65), Expect = 6.0
 Identities = 16/48 (33%), Positives = 24/48 (50%)

Query: 359 ILSSSTEPNRFSYDNYNFNKDRYYDNRETESDIRVSTLPPYQQRTDDT 406
           I+ S+TEP  ++  NYN++      N E +  I +S L   Q  T  T
Sbjct: 158 IIKSATEPFNYNGRNYNWDNHGQVRNGEFQCSIPLSQLTAQQSTTTTT 205


>AL110487-16|CAH10817.1|  307|Caenorhabditis elegans Hypothetical
           protein Y39E4B.3b protein.
          Length = 307

 Score = 30.3 bits (65), Expect = 6.0
 Identities = 16/48 (33%), Positives = 24/48 (50%)

Query: 359 ILSSSTEPNRFSYDNYNFNKDRYYDNRETESDIRVSTLPPYQQRTDDT 406
           I+ S+TEP  ++  NYN++      N E +  I +S L   Q  T  T
Sbjct: 158 IIKSATEPFNYNGRNYNWDNHGQVRNGEFQCSIPLSQLTAQQSTTTTT 205


>AL110487-15|CAB54432.1|  395|Caenorhabditis elegans Hypothetical
           protein Y39E4B.3a protein.
          Length = 395

 Score = 30.3 bits (65), Expect = 6.0
 Identities = 16/48 (33%), Positives = 24/48 (50%)

Query: 359 ILSSSTEPNRFSYDNYNFNKDRYYDNRETESDIRVSTLPPYQQRTDDT 406
           I+ S+TEP  ++  NYN++      N E +  I +S L   Q  T  T
Sbjct: 158 IIKSATEPFNYNGRNYNWDNHGQVRNGEFQCSIPLSQLTAQQSTTTTT 205


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.320    0.135    0.418 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,515,001
Number of Sequences: 27539
Number of extensions: 950461
Number of successful extensions: 1883
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1876
Number of HSP's gapped (non-prelim): 8
length of query: 855
length of database: 12,573,161
effective HSP length: 88
effective length of query: 767
effective length of database: 10,149,729
effective search space: 7784842143
effective search space used: 7784842143
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 64 (29.9 bits)