GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000825-TA|BGIBMGA000825-PA|IPR004299|Membrane bound
O-acyl transferase, MBOAT
         (392 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0292 + 27581862-27581913,27582395-27582615,27582691-275830...    95   9e-20
07_03_0834 - 21848064-21849752,21851121-21851850,21852617-21852705     31   1.2  
03_05_0788 + 27709563-27709832,27710101-27710887,27710947-277110...    30   3.7  
05_01_0363 - 2846133-2846441,2846820-2846885,2847184-2847276,284...    29   4.9  
03_06_0350 - 33306753-33307060,33307133-33307193,33307283-333074...    29   4.9  
08_02_1160 - 24793708-24794796,24794888-24794951,24795028-247951...    29   6.4  
01_06_1736 + 39556376-39556523,39556651-39556745,39556867-395570...    29   8.5  

>02_05_0292 +
           27581862-27581913,27582395-27582615,27582691-27583087,
           27583645-27583730,27584229-27584292,27584395-27584507,
           27584998-27585036,27585037-27585177
          Length = 370

 Score = 95.1 bits (226), Expect = 9e-20
 Identities = 80/328 (24%), Positives = 141/328 (42%), Gaps = 12/328 (3%)

Query: 46  VLTLKLMALSFDLWDGKKMIKGETLSENNKKTALLRAPSFVELIGFVYFPACFLVGPIFS 105
           VLTLK+++ + +  DG  M+K E L +  KK  L + PS +E  G+         GP++ 
Sbjct: 22  VLTLKIISCAINYSDG--MLKEEGLRDAQKKYRLAKLPSLIEYFGYCLCCGSHFAGPVYE 79

Query: 106 FRRYIDFVMDKFPVEKEAKVYEKQALRRLLQGLGYLIAFQVGVYVFNVKYMLSDDFWETS 165
            + Y+++   K              LR L+Q    +  +      F +       ++E  
Sbjct: 80  MKDYLEYTERKGLWASPTPSPLLPTLRALVQAGACMGLYLYLSPQFPLSRFSEPLYYEWG 139

Query: 166 IFYRHFYCGMWAHFALYKYISCWLLTEASCIRFGMSYNGVETTPEGKTISKWDGCNNIKL 225
            ++R FY  M    A +KY   W L+EA+ I  G+ ++G   +   K  +KWD   N+ +
Sbjct: 140 FWHRLFYQYMSGFTARWKYYFIWSLSEAAIIISGLGFSGWSDSSPPK--AKWDRAKNVDV 197

Query: 226 LRFEGATKFQHYIDSFNCNTNHFAAEYIYKRLKFLGNRN--LSQFFTLLFLALWHGTRSG 283
           L  E AT        +N   + +   Y+Y+RL   G +   L    T    A+WHG   G
Sbjct: 198 LGVELATSAVQLPLMWNIQVSTWLRYYVYERLVQKGKKPGFLQLLGTQTVSAVWHGLYPG 257

Query: 284 YYMTFFNEFLIMLMEKEL---EPIISKTELYNKLWSHNVTKYML---YGLLKMYTIVFMG 337
           Y + F    L++   K +   +  +S    +  L   N +  ++   Y  +    +  M 
Sbjct: 258 YIIFFVQSALMINGSKVIYRWQQAVSNPVFHAILVFVNFSYTLMVLNYSCIGFQFVFTML 317

Query: 338 WSLAPFDLKAFSKWWGVYSSLYYSGFVL 365
           ++L    + +F +    Y S+YY G ++
Sbjct: 318 YTLRFLQVLSFKETLASYQSVYYIGTIV 345


>07_03_0834 - 21848064-21849752,21851121-21851850,21852617-21852705
          Length = 835

 Score = 31.5 bits (68), Expect = 1.2
 Identities = 20/85 (23%), Positives = 36/85 (42%), Gaps = 1/85 (1%)

Query: 296 LMEKELEPIISKTELYNKLWSHNVTKYMLYGLLKMYTIV-FMGWSLAPFDLKAFSKWWGV 354
           L+       +  + LY +L +  V   ML  L+++  +V F+ W L   D  A   WW  
Sbjct: 3   LLPPSCSAFLPSSSLYLRLAAELVLSAMLLTLVRLIAVVLFLAWRLKHRDSDAMWLWWIS 62

Query: 355 YSSLYYSGFVLFLPWAILYKPLLKM 379
            +  ++ G    L  A    P+ ++
Sbjct: 63  IAGDFWFGVTWLLNQASKLNPVKRV 87


>03_05_0788 +
           27709563-27709832,27710101-27710887,27710947-27711086,
           27712209-27712442,27712782-27712847
          Length = 498

 Score = 29.9 bits (64), Expect = 3.7
 Identities = 18/86 (20%), Positives = 38/86 (44%), Gaps = 4/86 (4%)

Query: 278 HGT-RSGYYMTFFNEFLIMLMEKELEPIISKTELYNKLWSHNVTKYMLYGLLK---MYTI 333
           HG  R+  +  +FN+ +  +    +   +SK  L   +  H++T   +        ++T 
Sbjct: 262 HGRLRNPRFYPYFNDCIAAIDGTHIPIQVSKDLLVQHMCRHHITTQNVMACCDFDMIFTF 321

Query: 334 VFMGWSLAPFDLKAFSKWWGVYSSLY 359
           V  GW  +  D++ F     +YS ++
Sbjct: 322 VLAGWPGSVHDMRVFHDAMSIYSHVF 347


>05_01_0363 -
           2846133-2846441,2846820-2846885,2847184-2847276,
           2847487-2847600,2847762-2847849,2848116-2848199,
           2848312-2848411,2848886-2848949,2849339-2849419,
           2849944-2850000,2850188-2850387,2850668-2850971,
           2851518-2851707,2851922-2852032,2852111-2852192,
           2852443-2853046
          Length = 848

 Score = 29.5 bits (63), Expect = 4.9
 Identities = 14/50 (28%), Positives = 28/50 (56%), Gaps = 1/50 (2%)

Query: 101 GPIFSFRRYIDFVMDKFPVEKEAKVYEKQALRRLLQGLGYL-IAFQVGVY 149
           G + +FR  + ++ +KFP          + L R+L+G GY+  A ++G++
Sbjct: 678 GEVPNFRGVVSYIREKFPRFATTDKVWWEGLARILEGRGYIQEAAEIGLF 727


>03_06_0350 -
           33306753-33307060,33307133-33307193,33307283-33307458,
           33307551-33307608,33307730-33307834,33307924-33307981,
           33308072-33308238
          Length = 310

 Score = 29.5 bits (63), Expect = 4.9
 Identities = 13/52 (25%), Positives = 23/52 (44%)

Query: 203 NGVETTPEGKTISKWDGCNNIKLLRFEGATKFQHYIDSFNCNTNHFAAEYIY 254
           +G+E      T+   +   NI++LR+E   K+  + D F    N     + Y
Sbjct: 115 SGIEERIAAWTLLPQENAENIQILRYENGQKYDPHFDYFQDKVNQLQGGHRY 166


>08_02_1160 -
           24793708-24794796,24794888-24794951,24795028-24795146,
           24795496-24795612,24796365-24796406,24797342-24797506,
           24797806-24797898,24798190-24798291,24798360-24798501,
           24799301-24799651,24799741-24799839,24800019-24800230,
           24800394-24800429
          Length = 876

 Score = 29.1 bits (62), Expect = 6.4
 Identities = 18/69 (26%), Positives = 34/69 (49%), Gaps = 4/69 (5%)

Query: 286 MTFFNEFLIMLMEKELEPIISKTELYNKLW--SHNVT--KYMLYGLLKMYTIVFMGWSLA 341
           +TF  + +I+++ KE E +  K   Y  +W  SH +    + L G L     +   W+++
Sbjct: 476 LTFKPKLIILIVPKETERLDRKYPPYELIWEDSHQLAGKSFYLPGSLDADNKIMEQWNMS 535

Query: 342 PFDLKAFSK 350
           P  L  +S+
Sbjct: 536 PPPLSLWSR 544


>01_06_1736 +
           39556376-39556523,39556651-39556745,39556867-39557059,
           39557468-39557808,39558213-39558443,39558537-39558689
          Length = 386

 Score = 28.7 bits (61), Expect = 8.5
 Identities = 26/88 (29%), Positives = 40/88 (45%), Gaps = 9/88 (10%)

Query: 25  LIGYIVTESEDYDITWTMPHCVLTLKLMALSFDLWDGK--KMIKGETLSENNKKTALLRA 82
           L+G++      Y ITW +    +TL L  + F L  G+  K I  E  S ++      R 
Sbjct: 44  LMGFVFGRKMYY-ITWFLQF--ITLILGNMGFILLGGRALKAIHAEFSSSHSPA----RL 96

Query: 83  PSFVELIGFVYFPACFLVGPIFSFRRYI 110
             F+   GFVYF   + V  I + R ++
Sbjct: 97  QWFIAATGFVYFAFAYFVPTISAMRNWL 124


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.329    0.142    0.460 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,994,488
Number of Sequences: 37544
Number of extensions: 454437
Number of successful extensions: 1029
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1022
Number of HSP's gapped (non-prelim): 9
length of query: 392
length of database: 14,793,348
effective HSP length: 83
effective length of query: 309
effective length of database: 11,677,196
effective search space: 3608253564
effective search space used: 3608253564
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.8 bits)
S2: 61 (28.7 bits)