Silkworm BLAST Result against human

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000824-TA|BGIBMGA000824-PA|undefined
         (211 letters)

Database: human 
           224,733 sequences; 73,234,838 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AK125454-1|BAC86168.1|  256|Homo sapiens protein ( Homo sapiens ...    30   5.1  

>AK125454-1|BAC86168.1|  256|Homo sapiens protein ( Homo sapiens
          cDNA FLJ43465 fis, clone OCBBF2036476. ).
          Length = 256

 Score = 30.3 bits (65), Expect = 5.1
 Identities = 17/39 (43%), Positives = 18/39 (46%), Gaps = 2/39 (5%)

Query: 38 PFRSEPFSDGGIA--AAECGPRSVVSPVPDRFLGGVSAC 74
          P R  P  D G A  +A   PRS V P P R   G S C
Sbjct: 58 PARDRPHQDPGAAPASARLSPRSQVRPQPLRHASGSSCC 96


  Database: human
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 73,234,838
  Number of sequences in database:  224,733
  
Lambda     K      H
   0.321    0.136    0.419 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,833,827
Number of Sequences: 224733
Number of extensions: 911683
Number of successful extensions: 1307
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1307
Number of HSP's gapped (non-prelim): 1
length of query: 211
length of database: 73,234,838
effective HSP length: 87
effective length of query: 124
effective length of database: 53,683,067
effective search space: 6656700308
effective search space used: 6656700308
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 63 (29.5 bits)