GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000824-TA|BGIBMGA000824-PA|undefined
         (211 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U14732-1|AAC46491.1|  322|Tribolium castaneum fushi-tarazu protein.    21   9.6  
AY043292-2|AAK96032.1|  290|Tribolium castaneum homeodomain tran...    21   9.6  
AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2 ...    21   9.6  
AF321227-1|AAK16421.1|  290|Tribolium castaneum Ftz protein.           21   9.6  

>U14732-1|AAC46491.1|  322|Tribolium castaneum fushi-tarazu protein.
          Length = 322

 Score = 20.6 bits (41), Expect = 9.6
 Identities = 11/26 (42%), Positives = 15/26 (57%)

Query: 172 ALQTLIDPPISLKTLIARYEYCQFYD 197
           AL+ L+  P + KT   +YE  Q YD
Sbjct: 125 ALRALLTRPQAKKTPPNQYENFQQYD 150


>AY043292-2|AAK96032.1|  290|Tribolium castaneum homeodomain
           transcription factor Fushitarazu protein.
          Length = 290

 Score = 20.6 bits (41), Expect = 9.6
 Identities = 11/26 (42%), Positives = 15/26 (57%)

Query: 172 ALQTLIDPPISLKTLIARYEYCQFYD 197
           AL+ L+  P + KT   +YE  Q YD
Sbjct: 125 ALRALLTRPQAKKTPPNQYENFQQYD 150


>AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2
           protein protein.
          Length = 301

 Score = 20.6 bits (41), Expect = 9.6
 Identities = 12/44 (27%), Positives = 21/44 (47%)

Query: 132 STAPLDSRPSARRASHIIETRIMMRRSRNLTRWSTLEPEAALQT 175
           ST+   S PS   A H+ ++   ++   +++  ST  P  A  T
Sbjct: 166 STSSSASSPSVTAAPHLRDSPNYIKPQLHVSTGSTSSPTIASAT 209


>AF321227-1|AAK16421.1|  290|Tribolium castaneum Ftz protein.
          Length = 290

 Score = 20.6 bits (41), Expect = 9.6
 Identities = 11/26 (42%), Positives = 15/26 (57%)

Query: 172 ALQTLIDPPISLKTLIARYEYCQFYD 197
           AL+ L+  P + KT   +YE  Q YD
Sbjct: 125 ALRALLTRPQAKKTPPNQYENFQQYD 150


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.321    0.136    0.419 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 39,262
Number of Sequences: 317
Number of extensions: 1367
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of query: 211
length of database: 114,650
effective HSP length: 54
effective length of query: 157
effective length of database: 97,532
effective search space: 15312524
effective search space used: 15312524
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 41 (20.6 bits)