GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000824-TA|BGIBMGA000824-PA|undefined
         (211 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC343.14c |||translation initiation factor eIF2B|Schizosacchar...    26   3.6  
SPACUNK4.12c |mug138||metallopeptidase|Schizosaccharomyces pombe...    25   6.2  
SPBC4F6.06 |kin1||microtubule affinity-regulating kinase Kin1 |S...    25   8.2  
SPCC16A11.02 |utp13|SPCC63.16|U3 snoRNP-associated protein Utp13...    25   8.2  
SPAC1002.03c |gls2||glucosidase II Gls2|Schizosaccharomyces pomb...    25   8.2  

>SPAC343.14c |||translation initiation factor
           eIF2B|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 393

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 13/35 (37%), Positives = 21/35 (60%)

Query: 134 APLDSRPSARRASHIIETRIMMRRSRNLTRWSTLE 168
           A L SR      +  +ET ++MR+  + TRWST++
Sbjct: 18  ADLKSRKVQGPFAVAVETALVMRQVISQTRWSTVD 52


>SPACUNK4.12c |mug138||metallopeptidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 969

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 1/38 (2%)

Query: 173 LQTLIDPPISLKTLIARYEYCQFYDRFYDRMMFLLALV 210
           ++TL D P  L  L  R E  +FYD++Y   +  L ++
Sbjct: 183 IETLGDVPKELG-LDVRQELLKFYDKYYSANIMKLVII 219


>SPBC4F6.06 |kin1||microtubule affinity-regulating kinase Kin1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 891

 Score = 25.0 bits (52), Expect = 8.2
 Identities = 14/40 (35%), Positives = 20/40 (50%)

Query: 141 SARRASHIIETRIMMRRSRNLTRWSTLEPEAALQTLIDPP 180
           S ++    I  R   RR +N +  STL+  A L+T   PP
Sbjct: 592 SIKKNPSSIFRRFSSRRKQNKSSTSTLQISAPLETSQSPP 631


>SPCC16A11.02 |utp13|SPCC63.16|U3 snoRNP-associated protein Utp13
          |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 777

 Score = 25.0 bits (52), Expect = 8.2
 Identities = 12/35 (34%), Positives = 18/35 (51%)

Query: 42 EPFSDGGIAAAECGPRSVVSPVPDRFLGGVSACGE 76
          EP   GG  A +   + +V+ + DR +G  S  GE
Sbjct: 17 EPIYTGGPVAFDSNEKILVTALTDRIIGTRSETGE 51


>SPAC1002.03c |gls2||glucosidase II Gls2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 923

 Score = 25.0 bits (52), Expect = 8.2
 Identities = 13/30 (43%), Positives = 17/30 (56%)

Query: 134 APLDSRPSARRASHIIETRIMMRRSRNLTR 163
           APL   P   R  +I+ TR  +RR+  LTR
Sbjct: 777 APLGRVPVLLRGGNILITRERIRRAAELTR 806


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.321    0.136    0.419 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 741,596
Number of Sequences: 5004
Number of extensions: 22996
Number of successful extensions: 37
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 33
Number of HSP's gapped (non-prelim): 5
length of query: 211
length of database: 2,362,478
effective HSP length: 70
effective length of query: 141
effective length of database: 2,012,198
effective search space: 283719918
effective search space used: 283719918
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 52 (25.0 bits)